ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags31i05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y567_BUCAP (Q8K902) Hypothetical transport protein BUsg567 30 3.9
2GIL1_ENTHI (P32022) Galactose-inhibitable lectin 170 kDa subunit 30 3.9
3LEU2_NATPD (Q3IRQ4) 3-isopropylmalate dehydratase large subunit ... 30 5.1
4SWD3_YEAST (P38123) COMPASS component SWD3 (Complex proteins ass... 30 5.1
5SYRD_PSESY (P33951) ATP-binding protein syrD 30 5.1
6BUR1_EMENI (Q96VK3) Serine/threonine-protein kinase bur1 (EC 2.7... 30 5.1
7SYI_THETN (Q8R9L3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 29 8.7

>Y567_BUCAP (Q8K902) Hypothetical transport protein BUsg567|
          Length = 413

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 326 IGIQLAFSGTDKHESVLNSWY----EVSNLQQYSLYGLYSNVKGSLSGQFNKFF*ALLEW 493
           +G+ +  SG     S+ +SW     +++ +Q  SLY  +  +  S+ G F  FF   L+W
Sbjct: 331 LGLVIFSSGFFASHSIASSWIGFHAKIAKVQATSLYLFFYYLGSSIFGTFGGFFWFYLKW 390



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>GIL1_ENTHI (P32022) Galactose-inhibitable lectin 170 kDa subunit|
          Length = 1276

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +2

Query: 209 KDGCGACTGKPN----FICLGKQTCAIRTNIC-KSNNQGSMDCSI 328
           K G   CTGK N    ++C  +Q C++R  +C K++    M C +
Sbjct: 510 KRGKEMCTGKTNNCQEYVCDSEQRCSVRDKVCVKTSPYIEMSCYV 554



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>LEU2_NATPD (Q3IRQ4) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 474

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 203 WKKDGCGACTGKPNFICLGKQTCAIRTNICKSNNQGSMD 319
           W++ GC  C G  +   +G + CA  +N      QGS D
Sbjct: 403 WREAGCSMCLGMNDDQLVGDEACASSSNRNFVGRQGSKD 441



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>SWD3_YEAST (P38123) COMPASS component SWD3 (Complex proteins associated with|
           SET1 protein SWD3) (Set1C component SWD3)
          Length = 315

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
 Frame = -3

Query: 157 EAGHCN*TIG-DKDWLRSGCILPTSKC-------YHVPTS*GGAEXLWWC---CMVR 20
           E GHC  T+  DKDW R   ++P S+        Y +  S  G   +W C   C+VR
Sbjct: 169 ETGHCLKTLTYDKDWKRENGVVPISQVKFSENARYLLVKSLDGVVKIWDCIGGCVVR 225



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>SYRD_PSESY (P33951) ATP-binding protein syrD|
          Length = 566

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 342 ASWMPMLQSMDPWLLLLQMFVLMAQ--VCLPRQMKFGFPVQAPHP 214
           AS + +L  M P ++L+    ++AQ  +   R   FGF +  PHP
Sbjct: 277 ASVLAVLYIMGPLVMLVSAMPMLAQGRIACTRLADFGFSINEPHP 321



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>BUR1_EMENI (Q96VK3) Serine/threonine-protein kinase bur1 (EC 2.7.11.22) (EC|
           2.7.11.23) (Pitalre-like kinase A)
          Length = 544

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 162 WFLNS-TKAGYRTCTGRRTGVVPAQGSQTSSAWASKPAPSGQTSARAITRDP 314
           W  NS ++ G  T   R +    +QG+Q   AW+++P  + Q       +DP
Sbjct: 376 WSTNSGSRTGAETRNPRISSAARSQGNQLRDAWSNEPQQAWQRRGNEELKDP 427



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>SYI_THETN (Q8R9L3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 932

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 264 CLPRQMKFGFPVQAPHPSFFQCRFCSLPLLNSRTRVKLDTVTELLETK 121
           C+ RQ  +G P+       F C  C  PL+N  T   ++ V EL   K
Sbjct: 457 CISRQRVWGVPIP-----IFYCENCGKPLINDET---INAVKELFRQK 496


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,291,454
Number of Sequences: 219361
Number of extensions: 1525837
Number of successful extensions: 5194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5191
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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