ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags31i02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CH60_PYRSA (P46224) 60 kDa chaperonin (Protein Cpn60) (groEL pro... 30 3.7
2POM1_SCHPO (Q09690) Dual specificity protein kinase pom1 (EC 2.7... 29 6.3
3F113A_MOUSE (Q6P1Z5) Protein FAM113A 29 8.2

>CH60_PYRSA (P46224) 60 kDa chaperonin (Protein Cpn60) (groEL protein)|
          Length = 585

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 19/135 (14%)
 Frame = +1

Query: 133 GGLKGKVTKLTSXRSMNGKSKERSLQSXRINLMAVEKXINAAIDRVCEFTGLK------- 291
           G + G  T +     +N  +++  L    I  + VEK ++A + R+ E TG+        
Sbjct: 437 GIVPGGATLIHFIEDLNDWAEDNLLDDELIGALIVEKALSAPMKRIIENTGISSSIIIEK 496

Query: 292 ------VIFWDLQQPFIDNMYK------NNVSQARLDTIVEVLDLVLAQLCDVIVEQLRD 435
                  I ++  Q  I++MY+        V+++ +     +  ++L   C V+     D
Sbjct: 497 IKDKDFSIGYNAAQGEIEDMYEIGVIDPAKVTRSAMQNAASIASMILTTECIVV-----D 551

Query: 436 RVVTGLLQASLDGLV 480
           +  T  L+ S+  LV
Sbjct: 552 KKKTCSLETSIYWLV 566



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>POM1_SCHPO (Q09690) Dual specificity protein kinase pom1 (EC 2.7.12.1)|
          Length = 1087

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 468 QGCLQKPCNHTISQLLHN-DVTELSKHQIKNFDNSVQSSLRNI 343
           + C+  P  +T  QL++   +TE  + +I N+DN   + LRN+
Sbjct: 622 RACIITPVRNTEVQLINTAPLTEYEQDEINNYDNIYFTGLRNV 664



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>F113A_MOUSE (Q6P1Z5) Protein FAM113A|
          Length = 449

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 381 NFDNSVQSSLRNIVFVHIVDEWLLEVPKYDL*P 283
           ++D      L +++  H+ D W +E+PK+D  P
Sbjct: 248 HWDQHAHRHLSHLLLAHVADAWGVELPKHDRLP 280


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,541,404
Number of Sequences: 219361
Number of extensions: 1052482
Number of successful extensions: 3071
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3070
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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