ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31h14 |
|---|---|
| Clone Library Name | barley_pub |
>ZDH13_MOUSE (Q9CWU2) Probable palmitoyltransferase ZDHHC13 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 13) (DHHC-13) (Huntingtin-interacting protein 14-related protein) (HIP14-related protein) Length = 622 Score = 32.7 bits (73), Expect = 0.23 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%) Frame = +2 Query: 89 NPHHLIKLVMLLLSAVKISRWSFSTTFIMLRSHIRTTLISKKSWQHLEMIV----WMLYK 256 N HH I LLS + W +F+ +H TT W +L IV W+LY Sbjct: 467 NHHHYI---FFLLSLSMVCDWIIYGSFVYWSNHCATTFKEDGLWTYLNQIVACSPWVLYI 523 Query: 257 LMM 265 M+ Sbjct: 524 FML 526
>PH4H_MOUSE (P16331) Phenylalanine-4-hydroxylase (EC 1.14.16.1) (PAH)| (Phe-4-monooxygenase) Length = 452 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +1 Query: 136 KDFTVEFFNHLYYVAESYQDDPDKQKELA 222 +++TV F LYYVAES+ D +K + A Sbjct: 374 QEYTVTEFRPLYYVAESFNDAKEKVRTFA 402
>PH4H_HUMAN (P00439) Phenylalanine-4-hydroxylase (EC 1.14.16.1) (PAH)| (Phe-4-monooxygenase) Length = 452 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +1 Query: 136 KDFTVEFFNHLYYVAESYQDDPDKQKELA 222 +++TV F LYYVAES+ D +K + A Sbjct: 375 QNYTVTEFQPLYYVAESFNDAKEKVRNFA 403
>APE3_YEAST (P37302) Aminopeptidase Y precursor (EC 3.4.11.15)| Length = 537 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +1 Query: 139 DFTVEFFNHLYYVAESYQDDPDKQKELATLGNDCVDALQAHDDMSGSLQALNVAE 303 D VEF +A++ DPD L + + +DD SG++ LNVA+ Sbjct: 285 DSYVEFIKTQNIIADTKHGDPDNIVALGAHSDSVEEGPGINDDGSGTISLLNVAK 339
>TVID_SALTI (Q04974) Vi polysaccharide biosynthesis protein tviD| Length = 831 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/54 (29%), Positives = 30/54 (55%) Frame = +1 Query: 157 FNHLYYVAESYQDDPDKQKELATLGNDCVDALQAHDDMSGSLQALNVAELKLKD 318 F+HL Y ++YQD D +K + T + L++ ++ +AL+ AE+ L + Sbjct: 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386
>CAP1_RAT (Q08163) Adenylyl cyclase-associated protein 1 (CAP 1)| Length = 473 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/31 (45%), Positives = 21/31 (67%) Frame = +1 Query: 100 SDKIGDVVAKRRKDFTVEFFNHLYYVAESYQ 192 S++I +V+ R K+ +FFNHL V+ES Q Sbjct: 107 SEQIQEVITFREKNRGSKFFNHLSAVSESIQ 137
>CAP1_MOUSE (P40124) Adenylyl cyclase-associated protein 1 (CAP 1)| Length = 473 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/31 (45%), Positives = 21/31 (67%) Frame = +1 Query: 100 SDKIGDVVAKRRKDFTVEFFNHLYYVAESYQ 192 S++I +V+ R K+ +FFNHL V+ES Q Sbjct: 107 SEQIQEVITFREKNRGSKFFNHLSAVSESIQ 137
>PACC_TRIRU (Q9C1A4) pH-response transcription factor pacC/RIM101| Length = 758 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +1 Query: 127 KRRKDFTVEFFNHLYYVAESYQDDPDKQKE 216 +R +D+ +E N+ YV E QDD DK+++ Sbjct: 622 QRLRDYVLERLNNGDYVDEDKQDDSDKEED 651
>UNC47_CAEEL (P34579) Vesicular GABA transporter (Uncoordinated protein 47)| (Protein unc-47) Length = 486 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +2 Query: 95 HHLIKLVMLLLSAVKISRWSFSTTFIMLRSHIRTTLI 205 H ++ L+M+L +S+WSFST L + T++ Sbjct: 235 HLIVNLIMVLYCLSFVSQWSFSTITFSLNINTLPTIV 271
>PH4H_RAT (P04176) Phenylalanine-4-hydroxylase (EC 1.14.16.1) (PAH)| (Phe-4-monooxygenase) Length = 452 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +1 Query: 136 KDFTVEFFNHLYYVAESYQDDPDKQKELA 222 ++++V F LYYVAES+ D +K + A Sbjct: 374 QEYSVTEFQPLYYVAESFSDAKEKVRTFA 402
>YPG1_DICSP (P10511) Hypothetical plasmid pDG1 103 kDa protein| Length = 906 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = +2 Query: 134 VKISRWSFSTTFIMLRSHIRTTLISKKSWQHLEMIVWMLY---KLMMTCLAVFKR 289 V+I+ FS + L+ + TL+SKK+ Q++ IV Y K + C+ F + Sbjct: 784 VQINASEFSFSVSCLKFSVSATLVSKKNLQNISTIVLNKYNEEKSYLQCVKKFSK 838
>NU2M_PARHE (Q85PQ0) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 347 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/51 (23%), Positives = 27/51 (52%) Frame = +2 Query: 116 MLLLSAVKISRWSFSTTFIMLRSHIRTTLISKKSWQHLEMIVWMLYKLMMT 268 M+LL+ + + ST + + + TTL ++W + +I ++ LM++ Sbjct: 200 MMLLNLIIYIMMTLSTFMLFMHNSTTTTLALSQTWNKMPLITSLILMLMLS 250
>MURE_FUSNN (Q8R635) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 485 Score = 27.7 bits (60), Expect = 7.5 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 5/90 (5%) Frame = +1 Query: 73 LFEVVKSTPSD----KIGDVVAKRRKDFTV-EFFNHLYYVAESYQDDPDKQKELATLGND 237 +FE V +TP KI D K++ ++ + E +H + D D A N Sbjct: 142 VFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLEIGRVEVLDFD----YALFTNL 197 Query: 238 CVDALQAHDDMSGSLQALNVAELKLKDILN 327 D L H M QA LKLKDI N Sbjct: 198 TQDHLDYHLTMENYFQAKRKLFLKLKDINN 227
>POLG_PPVSK (Q84934) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3140 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = -1 Query: 319 CPLALVPQHSTLEDCQTCHHELVEHPHNHFQVLPTLFAYQ 200 CP LV +H C L+ HP H P + AYQ Sbjct: 2313 CPGQLVTKHVVKGKCTLFETYLLTHPEEHEFFRPLMGAYQ 2352
>POLG_PPVRA (P17767) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3140 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = -1 Query: 319 CPLALVPQHSTLEDCQTCHHELVEHPHNHFQVLPTLFAYQ 200 CP LV +H C L+ HP H P + AYQ Sbjct: 2313 CPGQLVTKHVVKGKCTLFETYLLTHPEEHEFFRPLMGAYQ 2352
>POLG_PPVNA (P17766) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3125 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = -1 Query: 319 CPLALVPQHSTLEDCQTCHHELVEHPHNHFQVLPTLFAYQ 200 CP LV +H C L+ HP H P + AYQ Sbjct: 2313 CPGQLVTKHVVKGKCTLFETYLLTHPEEHEFFRPLMGAYQ 2352
>POLG_PPVD (P13529) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral gen Length = 3141 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = -1 Query: 319 CPLALVPQHSTLEDCQTCHHELVEHPHNHFQVLPTLFAYQ 200 CP LV +H C L+ HP H P + AYQ Sbjct: 2314 CPGQLVTKHVVKGKCTLFETYLLTHPEEHEFFRPLMGAYQ 2353
>GP7D_CHLMU (Q46435) Virulence plasmid integrase pGP7-D| Length = 305 Score = 27.7 bits (60), Expect = 7.5 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 Query: 158 STTFIMLRSHIRTTLISKKSW 220 +TTF +R ++T ISKK W Sbjct: 117 NTTFFKIRDRVKTVSISKKEW 137
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = -1 Query: 274 QTCHHELVEHPHNHFQVLPTLFAY 203 QT HH L HPH H Q LP Y Sbjct: 113 QTPHHHLHSHPHQH-QTLPPHHPY 135
>SMP1_MAGPO (Q9Y778) Subtilisin-like proteinase Mp1 precursor (EC 3.4.21.-)| Length = 404 Score = 27.3 bits (59), Expect = 9.8 Identities = 18/67 (26%), Positives = 29/67 (43%) Frame = +1 Query: 118 VVAKRRKDFTVEFFNHLYYVAESYQDDPDKQKELATLGNDCVDALQAHDDMSGSLQALNV 297 ++ ++ F NHL +V + ++ K+ T G D V L SGS A + Sbjct: 35 IITLKQGASAASFHNHLSWVGDVHRRSVSKRD---TTGVDKVFDLDGFTAYSGSFDAATL 91 Query: 298 AELKLKD 318 E+K D Sbjct: 92 QEIKKSD 98
>FRI2_MAIZE (P29390) Ferritin-2, chloroplast precursor (EC 1.16.3.1) (ZmFer2)| Length = 252 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 8/51 (15%) Frame = -1 Query: 313 LALVPQ--------HSTLEDCQTCHHELVEHPHNHFQVLPTLFAYQGRPDM 185 LALVPQ H ++DC+ +E + +N +LFAY R ++ Sbjct: 67 LALVPQSPDRSLARHKFVDDCEAAINEQINVEYNASYAYHSLFAYFDRDNV 117
>FRI1_MAIZE (P29036) Ferritin-1, chloroplast precursor (EC 1.16.3.1) (ZmFer1)| Length = 254 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 8/51 (15%) Frame = -1 Query: 313 LALVPQ--------HSTLEDCQTCHHELVEHPHNHFQVLPTLFAYQGRPDM 185 LALVPQ H ++DC+ +E + +N +LFAY R ++ Sbjct: 70 LALVPQSPDKSLARHKFVDDCEAALNEQINVEYNASYAYHSLFAYFDRDNV 120 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,502,216 Number of Sequences: 219361 Number of extensions: 750128 Number of successful extensions: 2099 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2077 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2095 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
