Clone Information

BLAST Search Result

Clone Name	bags31h11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RRP5_HUMAN (Q14690) RRP5 protein homolog (Programmed cell death ...	153	4e-37
2	RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5	141	2e-33
3	CLF1_MAGGR (Q527H0) Pre-mRNA-splicing factor CLF1	50	5e-06
4	CLF1_NEUCR (Q7SGD2) Pre-mRNA-splicing factor clf-1	49	9e-06
5	CLF1_ASPFU (Q4WT84) Pre-mRNA-splicing factor clf1	48	2e-05
6	CLF1_EMENI (Q5BDX1) Pre-mRNA-splicing factor clf1	45	2e-04
7	CLF1_YEAST (Q12309) Pre-mRNA-splicing factor CLF1 (Crooked neck-...	44	4e-04
8	CLF1_YARLI (Q6C186) Pre-mRNA-splicing factor CLF1	43	6e-04
9	CLF1_CANGA (Q6FW76) Pre-mRNA-splicing factor CLF1	42	0.002
10	SYF1_CRYNE (Q5KH46) Pre-mRNA-splicing factor SYF1	41	0.003
11	CLF1_PARBR (Q5K654) Pre-mRNA-splicing factor CLF1	41	0.003
12	CLF1_KLULA (Q6CJK2) Pre-mRNA-splicing factor CLF1	41	0.003
13	CLF1_CANAL (Q5AED6) Pre-mRNA-splicing factor CLF1	40	0.004
14	XAB2_RAT (Q99PK0) XPA-binding protein 2 (Adapter protein ATH-55)	39	0.016
15	XAB2_MOUSE (Q9DCD2) XPA-binding protein 2	39	0.016
16	CLF1_SCHPO (P87312) Pre-mRNA-splicing factor clf1 (Complexed wit...	39	0.016
17	PRPU_MOUSE (Q91YR7) U5 snRNP-associated 102 kDa protein (U5-102 ...	39	0.016
18	CRN_DROME (P17886) Protein crooked neck	38	0.027
19	CLF1_DEBHA (Q6BSP7) Pre-mRNA-splicing factor CLF1	36	0.10
20	PRPU_HUMAN (O94906) U5 snRNP-associated 102 kDa protein (U5-102 ...	35	0.13
21	CLF1_CRYNV (Q9HF03) Pre-mRNA-splicing factor CLF1 (crooked-neck-...	35	0.17
22	CLF1_CRYNE (Q5KNE9) Pre-mRNA-splicing factor CLF1	35	0.17
23	XAB2_HUMAN (Q9HCS7) XPA-binding protein 2 (HCNP protein)	35	0.23
24	CSTF3_PONPY (Q5RDW9) Cleavage stimulation factor, 77 kDa subunit...	35	0.23
25	SYF1_KLULA (Q6CYA2) Pre-mRNA-splicing factor SYF1	35	0.23
26	SYF1_SCHPO (Q9P7R9) Pre-mRNA-splicing factor syf1 (Complexed wit...	35	0.23
27	SYF1_USTMA (Q4P7S1) Pre-mRNA-splicing factor SYF1	34	0.29
28	SYF1_YARLI (Q6CAR6) Pre-mRNA-splicing factor SYF1	33	0.50
29	SYF1_MAGGR (Q52DF3) Pre-mRNA-splicing factor SYF1	33	0.50
30	SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized ...	33	0.66
31	CLF1_USTMA (Q4PB37) Pre-mRNA-splicing factor CLF1	33	0.86
32	SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized ...	32	1.1
33	CSTF3_MOUSE (Q99LI7) Cleavage stimulation factor, 77 kDa subunit...	32	1.1
34	CSTF3_HUMAN (Q12996) Cleavage stimulation factor, 77 kDa subunit...	32	1.1
35	SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized ...	32	1.1
36	CRNL1_RAT (P63155) Crooked neck-like protein 1 (Crooked neck hom...	32	1.9
37	CRNL1_MOUSE (P63154) Crooked neck-like protein 1 (Crooked neck h...	32	1.9
38	CLF1_ASHGO (Q750X3) Pre-mRNA-splicing factor CLF1	30	7.2
39	RPOB_CAMJR (Q5HVY9) DNA-directed RNA polymerase beta chain (EC 2...	30	7.2
40	RPOB_CAMJE (Q46124) DNA-directed RNA polymerase beta chain (EC 2...	30	7.2
41	QUEF_VIBPA (Q87RS6) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)	30	7.2
42	QUEF_SHIFL (Q83JW9) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)	30	7.2
43	QUEF_ECOLI (Q46920) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)	30	7.2
44	QUEF_ECOL6 (Q8FEF7) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)	30	7.2
45	QUEF_ECO57 (Q8X6S9) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)	30	7.2
46	COBQ_LEPIN (Q8EXQ7) Cobyric acid synthase	30	7.2
47	VPS18_BRARE (P59015) Vacuolar protein sorting 18	29	9.5
48	Y107_ENCCU (Q8ST97) Hypothetical protein ECU01_0070/ECU01_1540/E...	29	9.5
49	SYF1_ASHGO (Q75EF0) Pre-mRNA-splicing factor SYF1	29	9.5
50	TOR1_YEAST (P35169) Phosphatidylinositol 3-kinase TOR1 (EC 2.7.1...	29	9.5

>RRP5_HUMAN (Q14690) RRP5 protein homolog (Programmed cell death protein 11)|
          Length = 1871

 Score =  153 bits (386), Expect = 4e-37
 Identities = 82/185 (44%), Positives = 122/185 (65%)
 Frame = +3

Query: 57   RALRTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMY 236
            RAL+TI+ REE+EKLNVWVA  NLEN YGS  ++++ K+F+RA+QY +P KV L L  +Y
Sbjct: 1644 RALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIY 1701

Query: 237  ERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKR 416
             ++++ + A EL++RM KRF+    VW++   F L + +     + V+ RAL  LP  + 
Sbjct: 1702 AKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHR-VLQRALECLPSKEH 1760

Query: 417  IKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDR 596
            +  + + A LEF+ G AE  ++ FE  L  YPKRTD+WSVY+D  I+ G  + +R +F+R
Sbjct: 1761 VDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFER 1820

Query: 597  VTCLS 611
            V  LS
Sbjct: 1821 VIHLS 1825

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>RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5|
          Length = 1729

 Score =  141 bits (355), Expect = 2e-33
 Identities = 75/198 (37%), Positives = 122/198 (61%), Gaps = 1/198 (0%)
 Frame = +3

Query: 9    FVXTLQXVEXSTFSS*RALRTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRAL 188
            F   L  +E +   + RAL+TIN REE EKLN+W+A  NLEN +G+  E+ ++++F RA 
Sbjct: 1484 FQLQLSEIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRAC 1541

Query: 189  QYCDPKKVHLALLGMYERTKQNELADELFDRMTKRFK-TSCKVWLRRIQFSLTQGKDVEY 365
            QY D   +H  LLG+YE +++ + A ELF    K+F      +W+    F ++  ++ E 
Sbjct: 1542 QYMDSYTIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQE- 1600

Query: 366  IKSVVNRALLSLPQSKRIKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLD 545
             ++++  AL +LP+   I+ + + A LEF  G  E GRS FE ++ + PKR D+W+VY+D
Sbjct: 1601 ARTILGNALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVD 1660

Query: 546  QEIRLGDTEIIRALFDRV 599
            QE++  D + +  LF+R+
Sbjct: 1661 QEVKAKDKKKVEDLFERI 1678

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>CLF1_MAGGR (Q527H0) Pre-mRNA-splicing factor CLF1|
          Length = 691

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
 Frame = +3

Query: 78  IREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDP--------KKVHL-ALLG 230
           +RE  +  +VW  Y  LE   G    D  ++++++A+    P        + ++L     
Sbjct: 317 VRENPKNYDVWFDYARLEEASGD--IDRTREVYEKAIAQVPPTQAKRHWRRYIYLWIFFA 374

Query: 231 MYERT--KQNELADELFDRMTK----RFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRAL 392
           ++E T  K  E A +++D   K    R  T  KVW+ +  F + QG D+   +  + RA+
Sbjct: 375 LWEETEAKNPERARQVYDTCLKLIPHRTFTFAKVWMHKAHFEIRQG-DLAAARKTLGRAI 433

Query: 393 LSLPQSKRIKFLTQTAILEFKCGVAEEGRSR--FELILREYPKRTDIWSVYLDQEIRLGD 566
              P+ +  K       +E +  + E GR R  +E  +   P     W  + + E  L D
Sbjct: 434 GMCPKDRLFK-----GYIEMEQKLYEFGRCRILYEKHIAYNPANCSTWVKWAELERGLDD 488

Query: 567 TEIIRALFD 593
            +  RA+ D
Sbjct: 489 LDRARAILD 497



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 13/176 (7%)
 Frame = +3

Query: 108 WVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYERTKQNELADELFDRMT 287
           W A+  LE  YG    D  ++IF R        +  +      E    ++   E+F+R  
Sbjct: 176 WSAFIKLEQRYGE--YDRAREIFTRFTMVHPEPRNWIKWSKFEEEYGTSDRVREVFERAI 233

Query: 288 KRFKTSCKVWLRR---IQFSLTQGK--DVEYIKSVVNRALLSLPQSKRIKFLTQTAILEF 452
           +        ++     I ++  + K  D++  +++    L +LP+SK +    +    E 
Sbjct: 234 EELSKYGDEFVEERLFIAYARYEAKLHDLDRARAIYKFGLENLPRSKAMLLHKEYTTFEK 293

Query: 453 KCG--------VAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDR 596
           + G        V  + R  +E ++RE PK  D+W  Y   E   GD +  R ++++
Sbjct: 294 QYGDREGVEDVVLSKRRRHYEDLVRENPKNYDVWFDYARLEEASGDIDRTREVYEK 349



 Score = 33.5 bits (75), Expect = 0.50
 Identities = 39/164 (23%), Positives = 72/164 (43%)
 Frame = +3

Query: 105 VWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYERTKQNELADELFDRM 284
           V ++   L  E    +E+A++K  QR   + D +++H      Y+  K+ E     F+  
Sbjct: 18  VQISAEQLLREATDRQEEALQKPTQR---FEDLEELH-----EYQGRKRKE-----FESY 64

Query: 285 TKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCGV 464
            +R   + K WL+  Q+ L Q K+    +SV  RAL     + ++    +    E K   
Sbjct: 65  CQRSGFNLKNWLQYAQWELEQ-KEYARSRSVFERALNL--HANKVTLWIRYVEAELKSRN 121

Query: 465 AEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDR 596
               R+  +  +   P+   +W  Y+  E  LG+   +R +F+R
Sbjct: 122 INFARNLLDRAVTHLPRVDKLWYKYVWVEEMLGNIPGVRQVFER 165

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>CLF1_NEUCR (Q7SGD2) Pre-mRNA-splicing factor clf-1|
          Length = 695

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 16/206 (7%)
 Frame = +3

Query: 24  QXVEXSTFSS*RALRTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDP 203
           + VE    +  R L    ++E  +  +VW  +  LE   G    D  +++++RA+    P
Sbjct: 300 EGVEDVILTKRRRLYEEQVKENAKNYDVWFDFARLEESGGDV--DRTREVYERAIAQVPP 357

Query: 204 KKV------HLALLGMYERTKQNELAD-----ELFDRMT-----KRFKTSCKVWLRRIQF 335
            +       ++ L   Y   ++ E  D     +++D        K+F T  KVW+ +  F
Sbjct: 358 TQEKRHWRRYIFLFLFYAIWEERETKDIGRARQIYDTCLNLIPHKKF-TFAKVWVAKAHF 416

Query: 336 SLTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCGVAEEGRSRFELILREYPK 515
            + QG+ +   +  + RA+   P+ K  K   +  +LE K    E  R+ +E  +   P 
Sbjct: 417 EIRQGQ-LTTARKTLGRAIGMCPKDKIFK---EYILLEQKLYEFERCRTLYEKHVMYNPA 472

Query: 516 RTDIWSVYLDQEIRLGDTEIIRALFD 593
               W  + + E  L D E  RA+F+
Sbjct: 473 NCQTWIKWAELERGLDDLERTRAIFE 498



 Score = 36.6 bits (83), Expect = 0.059
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 7/164 (4%)
 Frame = +3

Query: 126 LENEYGSPREDAVKKIFQRA-------LQYCDPKKVHLALLGMYERTKQNELADELFDRM 284
           ++N+  +P + + +++ + A       LQ    +   L  L  Y+  K+ E     F+  
Sbjct: 10  VKNKAPAPVQISAEQLLREAVDRQEVNLQTPTQRFADLEELKEYQGRKRKE-----FEDY 64

Query: 285 TKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCGV 464
            +R +     WL+  Q+ L Q K+    +SV  RAL   P + ++      A  E K   
Sbjct: 65  VRRNRVRLSNWLQYAQWELEQ-KEFARARSVFERALDVHPNNTQLWIRYVQA--EIKNRN 121

Query: 465 AEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDR 596
               R+  +  +   P+ T +W  YL     LGD    R +FDR
Sbjct: 122 INHARNLLDRAVTRLPRVTSLWYQYLYVMEMLGDIPGTRQVFDR 165



 Score = 33.9 bits (76), Expect = 0.38
 Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 8/171 (4%)
 Frame = +3

Query: 108 WVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYERTKQNELADELFDRMT 287
           W+ +   E EYG+   D V+++FQ A+Q                 T    L D+  D   
Sbjct: 209 WLKWAKFEEEYGT--SDTVREVFQTAIQ-----------------TIAETLGDDAVDE-- 247

Query: 288 KRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCGVA 467
                  ++++   ++   + ++ E  +++    L +LP+SK +         E + G  
Sbjct: 248 -------RIFIAFARYE-ARLREYERARAIYKFGLDNLPRSKSMTLHAHYTTFEKQFGDK 299

Query: 468 E--------EGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDR 596
           E        + R  +E  ++E  K  D+W  +   E   GD +  R +++R
Sbjct: 300 EGVEDVILTKRRRLYEEQVKENAKNYDVWFDFARLEESGGDVDRTREVYER 350

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>CLF1_ASPFU (Q4WT84) Pre-mRNA-splicing factor clf1|
          Length = 676

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 18/208 (8%)
 Frame = +3

Query: 24  QXVEXSTFSS*RALRTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDP 203
           + VE    S  R      ++E     +VW  +  LE   G P  D V+ I++RA+    P
Sbjct: 296 EGVEDVILSKRRVQYEEQLKENPRNYDVWFDFARLEETSGDP--DRVRDIYERAIAQIPP 353

Query: 204 KKV------HLALLGMYERTKQNELAD---------ELFDRMTKRFKTSCKVWLRRIQFS 338
            +       ++ L   Y   ++ E  D         E    +  +  T  K+WL + QF 
Sbjct: 354 SQEKRHWRRYIYLWIFYAIWEEMEAKDVDRARQIYTECLKLIPHKKFTFAKIWLLKAQFD 413

Query: 339 LTQGKDVEYIKSVVNRALLSLPQSKRIKFLT--QTAILEF-KCGVAEEGRSRFELILREY 509
           + Q  D++  +  + +A+   P+ K  +     +  + EF +C      R+ +E  +   
Sbjct: 414 IRQ-MDLQAARKTLGQAIGMCPKDKLFRGYIDLERQLFEFVRC------RTLYEKQIEWN 466

Query: 510 PKRTDIWSVYLDQEIRLGDTEIIRALFD 593
           P  +  W  Y + E  L D+E  RA+F+
Sbjct: 467 PANSQSWIKYAELERGLDDSERARAIFE 494



 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 32/119 (26%), Positives = 58/119 (48%)
 Frame = +3

Query: 246 KQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKF 425
           K+   A  +F+R      TS  +W+R I+  + + +++ + +++++RA+  LP+    KF
Sbjct: 86  KEFRRARSIFERALDVNPTSVVLWIRYIESEM-RNRNINHARNLLDRAVTILPRVD--KF 142

Query: 426 LTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDRVT 602
             +   +E   G  +  R  FE  +   P     WS Y+  E R  + E  RA+F R T
Sbjct: 143 WYKYVYMEETLGNIQGTRQVFERWMSWEPDE-GAWSAYIKLEKRYNEFERARAIFQRFT 200

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>CLF1_EMENI (Q5BDX1) Pre-mRNA-splicing factor clf1|
          Length = 602

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 18/190 (9%)
 Frame = +3

Query: 78  IREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPK------KVHLALLGMYE 239
           ++E     +VW  +  LE + G P  + V+ +++RA+    P       + ++ L   Y 
Sbjct: 243 LKENLRNYDVWFDFARLEEQSGDP--ERVRDVYERAIAQIPPSQEKRHWRRYIYLWIFYA 300

Query: 240 RTKQNELAD---------ELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRAL 392
             ++ E  D         E    +  +  T  KVWL + QF + Q  +++  +  + +A+
Sbjct: 301 LWEEMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQ-LNLQAARKTLGQAI 359

Query: 393 LSLPQSKRIK--FLTQTAILEF-KCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLG 563
              P+ K  +     +  + EF +C      R+ +E  +   P  +  W  Y + E  L 
Sbjct: 360 GMCPKDKLFRGYIDLERQLFEFVRC------RTLYEKQIEWNPSNSQSWIQYAELERGLD 413

Query: 564 DTEIIRALFD 593
           DTE  RA+++
Sbjct: 414 DTERARAIYE 423



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 30/119 (25%), Positives = 58/119 (48%)
 Frame = +3

Query: 246 KQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKF 425
           K+   A  +F+R      TS  +W+R I+  + + +++ + +++++RA+  LP+  ++ +
Sbjct: 15  KEFRRARSIFERALDVDSTSVPLWIRYIESEM-RNRNINHARNLLDRAVTILPRVDKLWY 73

Query: 426 LTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDRVT 602
             +   +E   G     R  FE  +   P     WS Y+  E R  + E  RA+F R T
Sbjct: 74  --KYVYMEETLGNIPGTRQVFERWMSWEPDE-GAWSAYIKLEKRYNEFERARAIFQRFT 129



 Score = 30.0 bits (66), Expect = 5.6
 Identities = 33/161 (20%), Positives = 68/161 (42%)
 Frame = +3

Query: 66  RTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYERT 245
           R + I    +KL  W  Y  +E   G+      +++F+R + +   +    A + + +R 
Sbjct: 60  RAVTILPRVDKL--WYKYVYMEETLGNI--PGTRQVFERWMSWEPDEGAWSAYIKLEKRY 115

Query: 246 KQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKF 425
            + E A  +F R T       + W++  +F    G   + ++ V   A+ +L +     F
Sbjct: 116 NEFERARAIFQRFTI-VHPEPRNWIKWARFEEEYGTS-DLVREVYGLAVETLGED----F 169

Query: 426 LTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQ 548
           + +   + +         +RFE  L+EY +   I+   LD+
Sbjct: 170 MDEKLFIAY---------ARFETKLKEYERARAIYKYALDR 201

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>CLF1_YEAST (Q12309) Pre-mRNA-splicing factor CLF1 (Crooked neck-like factor 1)|
           (PRP19-associated complex protein 77) (Synthetic lethal
           with CDC40 protein 3)
          Length = 687

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
 Frame = +3

Query: 258 LADELFDRMT------KRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRI 419
           L +ELF R+       K F T  K+WL   +F L +  DV   + ++ +A+   P++K  
Sbjct: 383 LEEELFQRLIDDIIPHKHF-TFSKIWLMYAKF-LIRHDDVPKARKILGKAIGLCPKAKTF 440

Query: 420 KFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALF 590
           K   +   LE K    +  R  +E  +   P    IWS Y + E  LGD + +R ++
Sbjct: 441 KGYIE---LEVKLKEFDRVRKIYEKFIEFQPSDLQIWSQYGELEENLGDWDRVRGIY 494



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 32/121 (26%), Positives = 52/121 (42%)
 Frame = +3

Query: 234 YERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSK 413
           Y+R K+ E     ++   KR +     W+R  QF + Q  D+   +S+  RALL    S 
Sbjct: 46  YQRRKRTE-----YEGYLKRNRLDMGQWIRYAQFEIEQ-HDMRRARSIFERALLV--DSS 97

Query: 414 RIKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFD 593
            I    +    E K       R+     +   P+   +W  YL  E  L + EI+R+L+ 
Sbjct: 98  FIPLWIRYIDAELKVKCINHARNLMNRAISTLPRVDKLWYKYLIVEESLNNVEIVRSLYT 157

Query: 594 R 596
           +
Sbjct: 158 K 158

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>CLF1_YARLI (Q6C186) Pre-mRNA-splicing factor CLF1|
          Length = 676

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 15/205 (7%)
 Frame = +3

Query: 24  QXVEXSTFSS*RALRTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDP 203
           + +E    +  R+     ++E+    + W +Y  L  E G    D +++IF+RA+    P
Sbjct: 296 EGIENVVLTKRRSKYEDQLKEDPADYDTWFSYITLGQESGL-EADQIREIFERAVSNVPP 354

Query: 204 KKVHL--------ALLGMYER--TKQNELADELFDRMT-----KRFKTSCKVWLRRIQFS 338
               L            ++E    K+ E A E++         K+F T  KVWL   +F 
Sbjct: 355 HSKRLWRRYIFLWIKYAIWEELENKEVEKAREIYKTCISIIPHKKF-TFAKVWLLWAKFE 413

Query: 339 LTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCGVAEEGRSRFELILREYPKR 518
           +  G   E  + ++ R L  +   K   +    A LE K    +  R  ++  + ++ + 
Sbjct: 414 IRHGNLPE-ARKILGRGL-GMSGGKPALYKGYIA-LEAKLREFDRCRKLYDKYVEKFAEF 470

Query: 519 TDIWSVYLDQEIRLGDTEIIRALFD 593
              W  Y + E  LGD E  RA+F+
Sbjct: 471 AAPWMEYAELEQMLGDEERARAIFE 495



 Score = 30.0 bits (66), Expect = 5.6
 Identities = 29/124 (23%), Positives = 52/124 (41%)
 Frame = +3

Query: 225 LGMYERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLP 404
           L  Y+  K+ E     ++   +R + +   W+R  Q+ L Q ++    +SV  RAL    
Sbjct: 44  LAEYQGRKRQE-----YEGALRRNRLNTGQWMRYAQWELEQ-REFARARSVFERALEV-- 95

Query: 405 QSKRIKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRA 584
            S  +    +    E K       R+  +  +   P+   +W  Y+  E  LG+    RA
Sbjct: 96  NSTHVPTWIRYIQCELKEKNINHARNLLDRAVTLLPRVDKLWFTYVATEETLGNIAGCRA 155

Query: 585 LFDR 596
           +F+R
Sbjct: 156 VFER 159

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>CLF1_CANGA (Q6FW76) Pre-mRNA-splicing factor CLF1|
          Length = 695

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 27/96 (28%), Positives = 47/96 (48%)
 Frame = +3

Query: 300 TSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCGVAEEGR 479
           T  K+W+   +F + Q  ++E  +S++ R+L   P+ K  K+      LE K    +  R
Sbjct: 398 TFSKIWILYAEFEIRQD-NLEKARSILGRSLGLCPKRKTFKYYID---LETKLREFDRVR 453

Query: 480 SRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRAL 587
             +E  L+  P   D W  Y++ E  LGD   +R++
Sbjct: 454 ILYENFLKFDPLNLDTWRAYVEFEDSLGDEVRVRSV 489



 Score = 38.1 bits (87), Expect = 0.020
 Identities = 31/120 (25%), Positives = 50/120 (41%)
 Frame = +3

Query: 237 ERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKR 416
           +R K+ E     F+   KR +   K W+R   F + Q  D+   +S+  RAL        
Sbjct: 43  QRRKRTE-----FEGYLKRNRLDVKQWMRYAVFEIEQ-HDMRRARSIFERALRV--HISY 94

Query: 417 IKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDR 596
           +    +    E K G     R+  E  + + P+   +W  YL  E  L   +I+R LF +
Sbjct: 95  VPLWIRYIESELKLGYINHARNILERAITKLPRVDKLWYKYLIVEESLAHFDIVRNLFQK 154

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>SYF1_CRYNE (Q5KH46) Pre-mRNA-splicing factor SYF1|
          Length = 1031

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 8/169 (4%)
 Frame = +3

Query: 105  VWVAYFN-LENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYERTKQN----ELADE 269
            +W  Y +     YG  + +  + +F++AL+ C P+K    L  MY + ++     + A  
Sbjct: 758  IWNIYLSKFVKRYGGKKLERARDLFEQALENC-PEKFCKPLYLMYAKLEEEHGLAKRAMG 816

Query: 270  LFDRMTKRFKTSCKVWLRRIQFS-LTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAIL 446
            ++DR     + S K  +  I  +  T    +   + +  RAL SLP  +  +   + A +
Sbjct: 817  IYDRAASTVQDSDKFEMYTIYIAKATANFGLPATRPIYERALESLPDKQTAEMCRRFARM 876

Query: 447  EFKCGVAEEGRSRFELILREYPKR--TDIWSVYLDQEIRLGDTEIIRAL 587
            E K G  +  R+ +    +    R   + W  + D EI  G  +  R +
Sbjct: 877  ERKLGEIDRARAIYAHASQFCDPRIEPEFWQEWNDFEIETGSEDTFREM 925

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>CLF1_PARBR (Q5K654) Pre-mRNA-splicing factor CLF1|
          Length = 677

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 39/175 (22%), Positives = 76/175 (43%), Gaps = 12/175 (6%)
 Frame = +3

Query: 108 WVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYERTKQNELADELF---- 275
           W AY  LE  Y     D V+ IF+R        K  +      E    +++  E++    
Sbjct: 176 WGAYIKLEKRYNE--FDRVRAIFERFTVVHPEPKNWIKWARFEEEYGTSDMVREVYGLAI 233

Query: 276 DRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAILEFK 455
           + + + F    K+++   ++   + K+ E  +++   AL  LP++K +         E +
Sbjct: 234 ETLGEDFMDE-KLFIAYARYE-AKLKEFERARAIYKYALDRLPRAKSVALHKAYTTFEKQ 291

Query: 456 CG--------VAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDR 596
            G        +  + R ++E  ++E PK  DIW  ++  E   GD E +R +++R
Sbjct: 292 FGDREGVEDVILSKRRVQYEEQIKENPKNYDIWFDFVRLEESSGDVERVRDVYER 346



 Score = 33.1 bits (74), Expect = 0.66
 Identities = 25/119 (21%), Positives = 57/119 (47%)
 Frame = +3

Query: 246 KQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKF 425
           K+   A  +F+R      T+  +W+R I+  + + +++ + +++++RA+    +  ++ +
Sbjct: 86  KEFRRARSVFERALDVDPTAVVLWIRYIEAEM-KTRNINHARNLLDRAVTIYSRVDKLWY 144

Query: 426 LTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDRVT 602
             +   +E   G     R  FE  +   P     W  Y+  E R  + + +RA+F+R T
Sbjct: 145 --KYVYMEEMLGNIPGTRQVFERWMSWEPDE-GAWGAYIKLEKRYNEFDRVRAIFERFT 200

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>CLF1_KLULA (Q6CJK2) Pre-mRNA-splicing factor CLF1|
          Length = 684

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 32/121 (26%), Positives = 52/121 (42%)
 Frame = +3

Query: 234 YERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSK 413
           ++R K+ E     ++ + KR +   + W+R  QF   Q KD+   +S+  RALL      
Sbjct: 44  WQRRKRTE-----YETVLKRNRLDLRQWMRYAQFEFDQ-KDIRRARSIYERALLV--DHG 95

Query: 414 RIKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFD 593
            I    Q    E K       R+  +      P+   +W  YL  E  LG+  I+R ++ 
Sbjct: 96  FIPLWIQYIDSEIKWKNINHARNLLDRATNALPRVDKLWFKYLLLEESLGNQGIVRGIYT 155

Query: 594 R 596
           R
Sbjct: 156 R 156

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>CLF1_CANAL (Q5AED6) Pre-mRNA-splicing factor CLF1|
          Length = 758

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 29/124 (23%), Positives = 55/124 (44%)
 Frame = +3

Query: 225 LGMYERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLP 404
           L  Y++TK+ E     F++   + + +   W R  ++ +    D    +S++ RAL    
Sbjct: 98  LQSYQQTKRKE-----FEQHINKNRLNLGQWTRYAKWEIENNHDFPRARSILERALDVNI 152

Query: 405 QSKRIKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRA 584
           Q   + F  Q   LE         R+  E  +   P+   +W +Y+  E  L +  ++RA
Sbjct: 153 Q--HVPFWIQYIQLELSHKNINHARNLMERAINTLPRVNKLWFLYVQTEEMLKNYPMVRA 210

Query: 585 LFDR 596
           +F+R
Sbjct: 211 VFER 214

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>XAB2_RAT (Q99PK0) XPA-binding protein 2 (Adapter protein ATH-55)|
          Length = 855

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 34/169 (20%), Positives = 71/169 (42%), Gaps = 7/169 (4%)
 Frame = +3

Query: 102  NVWVAYFN-LENEYGSPREDAVKKIFQRALQYCDP---KKVHLALLGMYERTKQNELADE 269
            ++W  Y     + YG  + +  + +F++AL  C P   K ++L    + E       A  
Sbjct: 555  DIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMA 614

Query: 270  LFDRMTKRFKTSCKVWLRRIQFS-LTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAIL 446
            ++DR T+  + + +  +  I      +   V + + +  +A+  L      +   + A +
Sbjct: 615  VYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADM 674

Query: 447  EFKCGVAEEGRSRFELILREYPKRTD--IWSVYLDQEIRLGDTEIIRAL 587
            E K G  +  R+ +    +    RT    W  + D E+R G+ + IR +
Sbjct: 675  ECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREM 723

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>XAB2_MOUSE (Q9DCD2) XPA-binding protein 2|
          Length = 855

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 34/169 (20%), Positives = 71/169 (42%), Gaps = 7/169 (4%)
 Frame = +3

Query: 102  NVWVAYFN-LENEYGSPREDAVKKIFQRALQYCDP---KKVHLALLGMYERTKQNELADE 269
            ++W  Y     + YG  + +  + +F++AL  C P   K ++L    + E       A  
Sbjct: 555  DIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMA 614

Query: 270  LFDRMTKRFKTSCKVWLRRIQFS-LTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAIL 446
            ++DR T+  + + +  +  I      +   V + + +  +A+  L      +   + A +
Sbjct: 615  VYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADM 674

Query: 447  EFKCGVAEEGRSRFELILREYPKRTD--IWSVYLDQEIRLGDTEIIRAL 587
            E K G  +  R+ +    +    RT    W  + D E+R G+ + IR +
Sbjct: 675  ECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREM 723

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>CLF1_SCHPO (P87312) Pre-mRNA-splicing factor clf1 (Complexed with cdc5 protein|
           4) (Cell cycle control protein cwf4)
          Length = 674

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 42/208 (20%), Positives = 85/208 (40%), Gaps = 44/208 (21%)
 Frame = +3

Query: 105 VWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYERTKQNELADELFDRM 284
           +W  Y  +E   G+      +++F+R L++   +   ++ + M  R  +NE A  +++R 
Sbjct: 140 LWYKYVYMEEMLGNIT--GCRQVFERWLKWEPDENCWMSYIRMERRYHENERARGIYERF 197

Query: 285 T------------KRFKTSC-------KVWLRRI-----------------QFSLTQGKD 356
                         RF+  C       +V+L  I                 +F + Q K+
Sbjct: 198 VVVHPEVTNWLRWARFEEECGNAANVRQVYLAAIDALGQEFLNERFFIAFAKFEIRQ-KE 256

Query: 357 VEYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCG--------VAEEGRSRFELILREYP 512
            E  +++   A+  +P+SK ++   +    E + G        V ++ R ++E +L++ P
Sbjct: 257 YERARTIFKYAIDFMPRSKSMELYKEYTHFEKQFGDHLGVESTVLDKRRLQYEKLLKDSP 316

Query: 513 KRTDIWSVYLDQEIRLGDTEIIRALFDR 596
              D W   L  E   GD   IR  +++
Sbjct: 317 YDYDTWLDLLKLEESAGDINTIRETYEK 344



 Score = 37.7 bits (86), Expect = 0.027
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
 Frame = +3

Query: 288 KRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCGVA 467
           K+F T  K+WL    F L Q K ++  +  + RAL   P+ K  +       +EF+  + 
Sbjct: 396 KKF-TFAKLWLMYAMFELRQRK-IDVARKTLGRALGMCPKPKLFR-----GYIEFEDAIK 448

Query: 468 EEGRSR--FELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFD 593
           +  R R  +E  +   P+    W  Y   E +LGD++  RAL++
Sbjct: 449 QFDRCRILYEKWILYDPEACAPWLGYAALETKLGDSDRARALYN 492



 Score = 34.7 bits (78), Expect = 0.23
 Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 7/164 (4%)
 Frame = +3

Query: 126 LENEYGSPREDAVKKIFQRALQYCD----PKKVH---LALLGMYERTKQNELADELFDRM 284
           ++N+  +P + + +++ + A++  D    P K++   L  L  ++  K+ E  D +    
Sbjct: 8   VKNKNPAPIQISAEQLLREAVERQDVAFVPPKINITDLEELQEFQGRKRKEFEDAI---- 63

Query: 285 TKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCGV 464
            +R + +   W+R  Q+ L Q K+    +SV  RAL     S  I    +    E K   
Sbjct: 64  -RRNRLAMGHWMRYGQWELDQ-KEFARARSVFERALDV--DSTYIPLWLKYIECEMKNRN 119

Query: 465 AEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDR 596
               R+ F+  + + P+   +W  Y+  E  LG+    R +F+R
Sbjct: 120 INHARNLFDRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFER 163

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>PRPU_MOUSE (Q91YR7) U5 snRNP-associated 102 kDa protein (U5-102 kDa protein)|
          Length = 941

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 36/177 (20%), Positives = 69/177 (38%)
 Frame = +3

Query: 57   RALRTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMY 236
            R++  +  +       +W+A   LE+E  +   +  +++  +A       +V +  + + 
Sbjct: 628  RSILALAFQANPNSEEIWLAAVKLESE--NNEYERARRLLAKARSSAPTARVFMKSVKLE 685

Query: 237  ERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKR 416
                    A EL +   + ++   K+W+ + Q    QG+ +E  +   N+ L   P S  
Sbjct: 686  WVLGNISAAQELCEEALRHYEDFPKLWMMKGQIE-EQGELMEKAREAYNQGLKKCPHSTP 744

Query: 417  IKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRAL 587
            +  L     LE K G     R+  E    + PK   +W   +  E R G   I   L
Sbjct: 745  LWLLLSR--LEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTL 799

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>CRN_DROME (P17886) Protein crooked neck|
          Length = 702

 Score = 37.7 bits (86), Expect = 0.027
 Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 55/221 (24%)
 Frame = +3

Query: 102 NVWVAYFNLENEYGSPREDAVKKIFQRALQYCDP--------KKVHLAL-LGMYERTKQN 254
           + W  Y  L    G    D +++ ++RA+    P        + ++L +   +YE     
Sbjct: 326 DAWFDYLRLIEAEGD--RDQIRETYERAISNVPPANEKNFWRRYIYLWINYALYE----- 378

Query: 255 ELADELFDRMTKRFKTSC-----------KVWLRRIQFSLTQGKDVEYIKSVVNRALLSL 401
           EL  E  +R  + +KT             K+WL   QF + + K+++  +  +  A+   
Sbjct: 379 ELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEI-RCKELQRARKALGLAIGMC 437

Query: 402 PQSKRI---------------------KFLT----------QTAILEFKCGVAEEGRSRF 488
           P+ K                       KFL           + A LE   G  +  R+ F
Sbjct: 438 PRDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKFAELENLLGDTDRARAIF 497

Query: 489 ELILREYPKRTD----IWSVYLDQEIRLGDTEIIRALFDRV 599
           EL +++   R D    +W  Y+D E+ LG+TE+ R L++R+
Sbjct: 498 ELAVQQ--PRLDMPELLWKAYIDFEVALGETELARQLYERL 536

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>CLF1_DEBHA (Q6BSP7) Pre-mRNA-splicing factor CLF1|
          Length = 714

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 7/164 (4%)
 Frame = +3

Query: 126 LENEYGSPREDAVKKIFQRALQYCD-----PKKV--HLALLGMYERTKQNELADELFDRM 284
           L  E  S  +   ++I Q A Q  D     PK+    L  L  ++ TK+ E     +++ 
Sbjct: 6   LSREKVSDSQITSEQILQDAFQLKDEPLNRPKQSIQDLDELRSFQLTKRKE-----YEQQ 60

Query: 285 TKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCGV 464
             + + +   WLR  ++ +    D    +S+  RAL    Q   I F T     E     
Sbjct: 61  LNKNRLNFGQWLRYAKWEVKHNHDFPRARSIFERALEVNVQ--HIPFWTHYIQFELSHKN 118

Query: 465 AEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDR 596
               R+  +  +   P+   +W +Y+  E  L + +++R +F+R
Sbjct: 119 ITHARNLLDRAVTTLPRVDKLWFLYVQTEETLKNYQMVRIIFER 162



 Score = 32.7 bits (73), Expect = 0.86
 Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
 Frame = +3

Query: 90  EEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDP-KKVHL------ALLGMYERTK 248
           E++  ++++Y   E  YG         + +R L+Y +   K  L      + + + ++  
Sbjct: 290 EQRNQIYLSYTEFEKSYGDKDTIESSIMIKRKLKYEEEVNKSPLDYDSWWSYISILQQED 349

Query: 249 QNELADELFDRMTKRFKTSC---KVWLRRIQF--------SLTQGKDVEYIKSVVNRALL 395
            NE+  E F+R  K   T      VW R I            T G  +E  +++ N+AL 
Sbjct: 350 NNEVTRETFERAIKVIPTDAFKSTVWRRYIYIWVKYAFWEEFTMG-SIENGRNIWNKALK 408

Query: 396 SLPQSKRIKFLTQTAILEFKC-GVAEEGRSRFELILRE--------YPKRTDIWSVYLDQ 548
            +P  +        +  +F+     E G +    IL           PKR  ++  Y++ 
Sbjct: 409 VIPHKRFTFAKIWISFAQFEIRNDPENGLASARKILGRSIGQSSTVKPKR-KLFKFYIEL 467

Query: 549 EIRLGDTEIIRALFDR 596
           E +LG+ + +R L+++
Sbjct: 468 EQKLGEWDRVRKLYEK 483

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>PRPU_HUMAN (O94906) U5 snRNP-associated 102 kDa protein (U5-102 kDa protein)|
          Length = 941

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 34/177 (19%), Positives = 68/177 (38%)
 Frame = +3

Query: 57   RALRTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMY 236
            R++  +  +       +W+A   LE+E  +   +  +++  +A       +V +  + + 
Sbjct: 628  RSILALAFQANPNSEEIWLAAVKLESE--NDEYERARRLLAKARSSAPTARVFMKSVKLE 685

Query: 237  ERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKR 416
                    A +L +   + ++   K+W+ + Q    Q + +E  +   N+ L   P S  
Sbjct: 686  WVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIE-EQKEMMEKAREAYNQGLKKCPHSTP 744

Query: 417  IKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRAL 587
            +  L     LE K G     R+  E    + PK   +W   +  E R G   I   L
Sbjct: 745  LWLLLSR--LEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTL 799

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>CLF1_CRYNV (Q9HF03) Pre-mRNA-splicing factor CLF1 (crooked-neck-like protein|
           1)
          Length = 724

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 468 EEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDRVTCL 608
           E  RS FE  L   P+  D+W  Y D E++  +    R LFDR   L
Sbjct: 92  ERSRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLFDRAITL 138

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>CLF1_CRYNE (Q5KNE9) Pre-mRNA-splicing factor CLF1|
          Length = 726

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 468 EEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDRVTCL 608
           E  RS FE  L   P+  D+W  Y D E++  +    R LFDR   L
Sbjct: 92  ERSRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLFDRAITL 138

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>XAB2_HUMAN (Q9HCS7) XPA-binding protein 2 (HCNP protein)|
          Length = 855

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 32/169 (18%), Positives = 70/169 (41%), Gaps = 7/169 (4%)
 Frame = +3

Query: 102  NVWVAYFN-LENEYGSPREDAVKKIFQRALQYCDP---KKVHLALLGMYERTKQNELADE 269
            ++W  Y       YG  + +  + +F++AL  C P   K ++L    + E       A  
Sbjct: 555  DIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMA 614

Query: 270  LFDRMTKRFKTSCKVWLRRIQFS-LTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAIL 446
            +++R T+  + + +  +  I      +   V + + +  +A+  L      +   + A +
Sbjct: 615  VYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADM 674

Query: 447  EFKCGVAEEGRSRFELILREYPKRTD--IWSVYLDQEIRLGDTEIIRAL 587
            E K G  +  R+ +    +    RT    W  + D E+R G+ + I+ +
Sbjct: 675  ECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKEM 723

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>CSTF3_PONPY (Q5RDW9) Cleavage stimulation factor, 77 kDa subunit (CSTF 77 kDa|
           subunit) (CF-1 77 kDa subunit) (CstF-77)
          Length = 717

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 18/79 (22%), Positives = 37/79 (46%)
 Frame = +3

Query: 360 EYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVY 539
           EY+   V +A   L ++        T I E +    ++ R  +E ++ ++P     W +Y
Sbjct: 12  EYVPEKVKKAEKKLEENPYDLDAWSTLIREAQNQPIDKARKTYERLVAQFPSSGRFWKLY 71

Query: 540 LDQEIRLGDTEIIRALFDR 596
           ++ EI+  + + +  LF R
Sbjct: 72  IEAEIKAKNYDKVEKLFQR 90

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>SYF1_KLULA (Q6CYA2) Pre-mRNA-splicing factor SYF1|
          Length = 798

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
 Frame = +3

Query: 66  RTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYERT 245
           R++ I       ++W  Y ++  +    +E   + IF+ A++        ++    Y   
Sbjct: 561 RSVEIFPPSVSKSIWDIYLDVALKADITKEQK-RDIFESAIKLAASGVACVSFFEKYSDF 619

Query: 246 KQN----ELADELFDRMTKRF---KTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLP 404
           + N    E + E+  +  K     ++ C +W   I  S  Q  DV + + +    + +LP
Sbjct: 620 ELNLGFHERSVEILHKGAKNISDLESKCTLWEECINRSEKQ-LDVNHTRKLYEECIETLP 678

Query: 405 QSKRIKFLTQTAILE 449
            SK IKFL   AILE
Sbjct: 679 NSKAIKFLLPFAILE 693

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>SYF1_SCHPO (Q9P7R9) Pre-mRNA-splicing factor syf1 (Complexed with cdc5 protein|
            3) (Cell cycle control protein cwf3)
          Length = 790

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 35/165 (21%), Positives = 72/165 (43%), Gaps = 9/165 (5%)
 Frame = +3

Query: 105  VWVAYFN-LENEYGSPREDAVKKIFQRALQYCDP---KKVHLALLGMYERTKQNELADEL 272
            +W  Y       Y     +  + +F++AL+ C P   K ++L      E+  + + +  +
Sbjct: 552  LWNLYLTKFVKRYQGTHMERTRDLFEQALEGCPPEFSKSIYLLYADFEEKFGKAKRSISI 611

Query: 273  FDRMTKRFKTSCKVWLRRI---QFSLTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAI 443
             ++   + KT+ ++ +  +   + +L  G  V   ++V  +A+ SL  S+      + A 
Sbjct: 612  LEKAADKVKTADRLAIYNVLLVKVALNYG--VLATRTVYEKAIESLSDSEVKDMCLRFAE 669

Query: 444  LEFKCGVAEEGRSRFELILREYPKR--TDIWSVYLDQEIRLGDTE 572
            +E K G  +  R  +    +    R  TD W  + + EIR G+ E
Sbjct: 670  METKLGEIDRARLIYIHGSQYCDPRVETDYWKAWQEFEIRYGNPE 714



 Score = 31.2 bits (69), Expect = 2.5
 Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 11/159 (6%)
 Frame = +3

Query: 156 DAVKKIFQRALQYCDPKKVHLAL-------LGMYERTKQNELADELFDRMT----KRFKT 302
           + V +++  A++  +PK  H +L          YE     E +  +F++ T    K    
Sbjct: 367 EKVVQVYTDAIKNVNPKLAHGSLGKLFSEFARFYENFDDLEQSRIIFEKATHVPYKTVNE 426

Query: 303 SCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCGVAEEGRS 482
             +VW+   +  L   ++ +  + ++  A+ + P+   I F  ++   + +         
Sbjct: 427 LAQVWIDWAEMELRH-QNFDAARKLIGDAVHA-PRKSHISFFDESLSPQVRLH------- 477

Query: 483 RFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDRV 599
                     K + IW  YLD E  +G  E  R L+DRV
Sbjct: 478 ----------KSSKIWMYYLDLEESVGTIETTRKLYDRV 506

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>SYF1_USTMA (Q4P7S1) Pre-mRNA-splicing factor SYF1|
          Length = 1081

 Score = 34.3 bits (77), Expect = 0.29
 Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 6/178 (3%)
 Frame = +3

Query: 69   TINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYERTK 248
            TI  R  ++   +W  +  +E  + S  ++A++ +   A     P+            TK
Sbjct: 670  TIPFRRVDDLAEIWCEWAEMELRH-SNYDEAIRTM---ARSVAPPRN-----------TK 714

Query: 249  QNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRI--- 419
              +  D+     T+ FK S K+W   +    + G DVE  K V  + L     S +I   
Sbjct: 715  GIQYHDDTLPPQTRLFK-SLKLWSFYVDLEESLG-DVESTKRVYEKMLELKIASAQIIIN 772

Query: 420  --KFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEI-RLGDTEIIRA 584
               FL      E    V E G   F      YP   +IW+VYL + + R G  ++ RA
Sbjct: 773  YAAFLEDNKYFEESFKVFERGVELFS-----YPVAFEIWNVYLSKFVKRYGGAKLERA 825

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>SYF1_YARLI (Q6CAR6) Pre-mRNA-splicing factor SYF1|
          Length = 736

 Score = 33.5 bits (75), Expect = 0.50
 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
 Frame = +3

Query: 72  INIREEEEKLNVWVAYFN-LENEYGSPREDAVKKIFQRAL-----------QYCDPKKVH 215
           ++I      +  W+ Y + ++N+  + R+  +  +F+RA+           +Y D +   
Sbjct: 6   LDIASSPGDVRPWIRYISSVKNDKTTARQKCI--LFERAVTALPRSYKLWKEYLDFRSGL 63

Query: 216 LALLGMYERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALL 395
              L   +   + +  + L+++          +WL+ +QF + Q K V   +SV+N AL 
Sbjct: 64  CTGLNPIKHADEYDRVNALYEKSLVLLHKMPVIWLQYLQFLMLQPK-VTKTRSVINEALR 122

Query: 396 SLPQSKRIKFL 428
           SLP  +  + L
Sbjct: 123 SLPVQQHPRVL 133

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>SYF1_MAGGR (Q52DF3) Pre-mRNA-splicing factor SYF1|
          Length = 816

 Score = 33.5 bits (75), Expect = 0.50
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
 Frame = +3

Query: 264 DELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRI--KFLT-- 431
           D ++++  +R   S K WL  I + +  G  VE    V+ RA + LP+S ++   +LT  
Sbjct: 8   DFVYEQDIQRSPGSTKPWLAYISYKIQHGT-VEEQAFVLERACMQLPRSYKLWKMYLTFR 66

Query: 432 --QTAILEFKCGVAEEGR--SRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDR 596
               A L      AE  +  S FE  L    K   IW +YL   ++     + R  FDR
Sbjct: 67  TKHIAKLNAAIFAAEYRKVNSLFERALILLNKMPRIWEMYLKFLMKQPLVTLTRRTFDR 125

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>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3) (mSART-3) (Tumor-rejection antigen SART3)
          Length = 962

 Score = 33.1 bits (74), Expect = 0.66
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
 Frame = +3

Query: 321 RRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKF----------LTQTAILEFK-CGVA 467
           RR+ F     K++E ++S+  RAL  L Q    +F          +   A +E + C   
Sbjct: 431 RRVDFRQDSSKELEELRSMFTRALEYLQQEVEERFSESGDPSCLIMQSWARVEARLCNNM 490

Query: 468 EEGRSRFELIL-REYPKRTDIWSVYLDQEIRLGDTEIIR-ALFDRVTCLS 611
           ++ R  ++ I+ R   K  ++W  Y + E   GDT+  R AL   V C S
Sbjct: 491 QKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAVQCTS 540

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>CLF1_USTMA (Q4PB37) Pre-mRNA-splicing factor CLF1|
          Length = 781

 Score = 32.7 bits (73), Expect = 0.86
 Identities = 27/120 (22%), Positives = 53/120 (44%)
 Frame = +3

Query: 234 YERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSK 413
           Y+RT+  E+       +  R  T  K+W++  +F + +  ++   + ++  A+   P   
Sbjct: 403 YDRTR--EIYKAAIALVPHRRFTFAKLWVQYARFEVRR-LELTAARKILGAAIGMAP--- 456

Query: 414 RIKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFD 593
           ++K  +    LE      +  R  +E  L   P  +  W  + + E  L DT+  RALF+
Sbjct: 457 KLKLFSSYIELEVSLKEFDRARKIYEKALEWDPTNSQTWVRFAELEKNLFDTDRARALFE 516



 Score = 30.8 bits (68), Expect = 3.3
 Identities = 25/121 (20%), Positives = 52/121 (42%)
 Frame = +3

Query: 234 YERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSK 413
           Y   +++E  D L     +R   +   W++   +  +QG +++  +S+  RAL   P   
Sbjct: 51  YRGRRRSEFEDRL-----RRNGLNMSTWIKYASWEASQG-EMDRCRSIYERALDVEPH-- 102

Query: 414 RIKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFD 593
            +    +    E K    +  R+ ++  +   P+   +W  Y+  E  LG+    R +F+
Sbjct: 103 HLPLWLRYTEQELKMRNVQHARNLYDRAVSILPRIDQLWYKYVHLEELLGNIPGTRQVFE 162

Query: 594 R 596
           R
Sbjct: 163 R 163



 Score = 30.0 bits (66), Expect = 5.6
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 459 GVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDRVTCL 608
           G  +  RS +E  L   P    +W  Y +QE+++ + +  R L+DR   +
Sbjct: 84  GEMDRCRSIYERALDVEPHHLPLWLRYTEQELKMRNVQHARNLYDRAVSI 133

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>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3)
          Length = 981

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
 Frame = +3

Query: 321 RRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKF----------LTQTAILEFK-CGVA 467
           RR+ F     K++E +++   RAL  L Q    +F          +   A +E + C   
Sbjct: 448 RRVDFKQDSSKELEELRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWARIEARLCNNM 507

Query: 468 EEGRSRFELIL-REYPKRTDIWSVYLDQEIRLGDTEIIR-ALFDRVTCLS 611
           ++ R  ++ I+ R   K  ++W  Y + E   GDT+  R AL   V C S
Sbjct: 508 QKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAVQCTS 557

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>CSTF3_MOUSE (Q99LI7) Cleavage stimulation factor, 77 kDa subunit (CSTF 77 kDa|
           subunit) (CF-1 77 kDa subunit) (CstF-77)
          Length = 717

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 17/79 (21%), Positives = 36/79 (45%)
 Frame = +3

Query: 360 EYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVY 539
           EY+   V +A   L ++          I E +    ++ R  +E ++ ++P     W +Y
Sbjct: 12  EYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLY 71

Query: 540 LDQEIRLGDTEIIRALFDR 596
           ++ EI+  + + +  LF R
Sbjct: 72  IEAEIKAKNYDKVEKLFQR 90

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>CSTF3_HUMAN (Q12996) Cleavage stimulation factor, 77 kDa subunit (CSTF 77 kDa|
           subunit) (CF-1 77 kDa subunit) (CstF-77)
          Length = 717

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 17/79 (21%), Positives = 36/79 (45%)
 Frame = +3

Query: 360 EYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVY 539
           EY+   V +A   L ++          I E +    ++ R  +E ++ ++P     W +Y
Sbjct: 12  EYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLY 71

Query: 540 LDQEIRLGDTEIIRALFDR 596
           ++ EI+  + + +  LF R
Sbjct: 72  IEAEIKAKNYDKVEKLFQR 90

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>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa)
           (Tip110)
          Length = 963

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
 Frame = +3

Query: 321 RRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKF----------LTQTAILEFK-CGVA 467
           RR+ F     K++E +++   RAL  L Q    +F          +   A +E + C   
Sbjct: 430 RRVDFKQDSSKELEELRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWARIEARLCNNM 489

Query: 468 EEGRSRFELIL-REYPKRTDIWSVYLDQEIRLGDTEIIR-ALFDRVTCLS 611
           ++ R  ++ I+ R   K  ++W  Y + E   GDT+  R AL   V C S
Sbjct: 490 QKARELWDSIMTRGNAKYANMWLEYYNLERAHGDTQHCRKALHRAVQCTS 539

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>CRNL1_RAT (P63155) Crooked neck-like protein 1 (Crooked neck homolog)|
           (Crooked neck protein)
          Length = 690

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 53/225 (23%), Positives = 84/225 (37%), Gaps = 56/225 (24%)
 Frame = +3

Query: 84  EEEEKLN-----VWVAYFNLENEYGSPREDAVKKIFQRALQYCDPK------KVHLALLG 230
           EEE K N      W  Y  L         D V+++++RA+    P       K ++ L  
Sbjct: 320 EEEVKANPHNYDAWFDYLRLVES--DAEADTVREVYERAIANVPPIQEKRHWKRYIYLWV 377

Query: 231 MYERTKQNELADELFDRMT----------KRFKTSCKVWLRRIQFSLTQGKDVEYIKSVV 380
            Y   ++ E  D    R            K+F T  K+WL   QF + Q K++ + +  +
Sbjct: 378 NYALYEELEAKDPERTRQVYQASLELIPHKKF-TFAKMWLYYAQFEIRQ-KNLPFARRAL 435

Query: 381 NRALLSLPQSKRIK---------------------FLT----------QTAILEFKCGVA 467
             ++   P++K  K                     FL           + A LE   G  
Sbjct: 436 GTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDI 495

Query: 468 EEGRSRFELILREYPKRTD----IWSVYLDQEIRLGDTEIIRALF 590
           E  R+ +EL + +   R D    +W  Y+D EI   +TE  R L+
Sbjct: 496 ERARAIYELAISQ--PRLDMPEVLWKSYIDFEIEQEETERTRNLY 538

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>CRNL1_MOUSE (P63154) Crooked neck-like protein 1 (Crooked neck homolog)|
          Length = 690

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 53/225 (23%), Positives = 84/225 (37%), Gaps = 56/225 (24%)
 Frame = +3

Query: 84  EEEEKLN-----VWVAYFNLENEYGSPREDAVKKIFQRALQYCDPK------KVHLALLG 230
           EEE K N      W  Y  L         D V+++++RA+    P       K ++ L  
Sbjct: 320 EEEVKANPHNYDAWFDYLRLVES--DAEADTVREVYERAIANVPPIQEKRHWKRYIYLWV 377

Query: 231 MYERTKQNELADELFDRMT----------KRFKTSCKVWLRRIQFSLTQGKDVEYIKSVV 380
            Y   ++ E  D    R            K+F T  K+WL   QF + Q K++ + +  +
Sbjct: 378 NYALYEELEAKDPERTRQVYQASLELIPHKKF-TFAKMWLYYAQFEIRQ-KNLPFARRAL 435

Query: 381 NRALLSLPQSKRIK---------------------FLT----------QTAILEFKCGVA 467
             ++   P++K  K                     FL           + A LE   G  
Sbjct: 436 GTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDI 495

Query: 468 EEGRSRFELILREYPKRTD----IWSVYLDQEIRLGDTEIIRALF 590
           E  R+ +EL + +   R D    +W  Y+D EI   +TE  R L+
Sbjct: 496 ERARAIYELAISQ--PRLDMPEVLWKSYIDFEIEQEETERTRNLY 538

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>CLF1_ASHGO (Q750X3) Pre-mRNA-splicing factor CLF1|
          Length = 683

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = +3

Query: 438 AILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDRVTCL 608
           A  E++       RS FE  L   P    +W  Y+D E+R  D    R L  R T L
Sbjct: 67  AAFEYEQRDMRRARSVFERALAVAPGDVVVWLRYVDCELRARDVNHARNLLVRATAL 123

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>RPOB_CAMJR (Q5HVY9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1378

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 213  HLALLGMYERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRAL 392
            HL L+G+    +  +   E+FDR  K F    +  +  I        + E+IKS+ +  L
Sbjct: 1145 HLGLVGL----RLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSLSDEEL 1200

Query: 393  LSLPQ--SKRIKFLT 431
            L+  +  SK +KF T
Sbjct: 1201 LNYARDWSKGVKFST 1215

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>RPOB_CAMJE (Q46124) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1378

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 213  HLALLGMYERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRAL 392
            HL L+G+    +  +   E+FDR  K F    +  +  I        + E+IKS+ +  L
Sbjct: 1145 HLGLVGL----RLGDQIQEIFDRKQKDFLKELRAKILEICSIPRLANEKEFIKSLSDEEL 1200

Query: 393  LSLPQ--SKRIKFLT 431
            L+  +  SK +KF T
Sbjct: 1201 LNYARDWSKGVKFST 1215

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>QUEF_VIBPA (Q87RS6) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)|
          Length = 281

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 87  EEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYER 242
           + EKL  ++  F   NE+    E  V++IF   ++YC P K  L +   Y R
Sbjct: 209 DREKLLRYLVSFREHNEF---HEQCVERIFTDLMKYCQPNK--LTVFARYTR 255

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>QUEF_SHIFL (Q83JW9) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)|
          Length = 282

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 87  EEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYER 242
           + EKL  ++  F   NE+    E  V++IF   L++C P+K  L++   Y R
Sbjct: 211 DREKLLRYLVSFRHHNEF---HEQCVERIFNDLLRFCQPEK--LSVYARYTR 257

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>QUEF_ECOLI (Q46920) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)|
          Length = 282

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 87  EEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYER 242
           + EKL  ++  F   NE+    E  V++IF   L++C P+K  L++   Y R
Sbjct: 211 DREKLLRYLVSFRHHNEF---HEQCVERIFNDLLRFCQPEK--LSVYARYTR 257

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>QUEF_ECOL6 (Q8FEF7) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)|
          Length = 282

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 87  EEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYER 242
           + EKL  ++  F   NE+    E  V++IF   L++C P+K  L++   Y R
Sbjct: 211 DREKLLRYLVSFRHHNEF---HEQCVERIFNDLLRFCQPEK--LSVYARYTR 257

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>QUEF_ECO57 (Q8X6S9) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)|
          Length = 282

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 87  EEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYER 242
           + EKL  ++  F   NE+    E  V++IF   L++C P+K  L++   Y R
Sbjct: 211 DREKLLRYLVSFRHHNEF---HEQCVERIFNDLLRFCQPEK--LSVYARYTR 257

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>COBQ_LEPIN (Q8EXQ7) Cobyric acid synthase|
          Length = 490

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
 Frame = +3

Query: 357 VEYIKSVVNRALLSL-PQSKRIKFLTQTAILEFKCGVAEEG---RSRFELILREYPK--- 515
           + YI+   N+ +L + P  K +K L +   LEFK G  ++      R +++L + P+   
Sbjct: 204 INYIEEYTNKPILGIVPYIKNLK-LPEEDSLEFKSGALDDTSKLEERLDVVLIDIPRISN 262

Query: 516 RTDIWSVYLDQEIRLGDTEIIRALFD 593
            TDI ++  + ++R+    I+R + D
Sbjct: 263 HTDIDALRAEPDVRV---RIVRTVED 285

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>VPS18_BRARE (P59015) Vacuolar protein sorting 18|
          Length = 974

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 11/151 (7%)
 Frame = +3

Query: 87  EEEKLNVWVAY-----FNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYERTKQ 251
           ++E  +VW  Y     F+L  EY   R + +  +  +  ++C   K +L      E  K 
Sbjct: 392 QKEARDVWQMYMNMNKFDLAKEYCKDRPECLDMVLAKEAEHCFQNKRYL------ESAKC 445

Query: 252 NELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKR----- 416
             L    F+ +  +F                + K  E +K  + + L++L  S++     
Sbjct: 446 YALTQNYFEEIALKF---------------IEAKQEEALKEFLIKKLVNLKPSEKTQITL 490

Query: 417 -IKFLTQTAILEFKCGVAEEGRSRFELILRE 506
            + +LT+  +       A+EG+    L  RE
Sbjct: 491 LVTWLTELYLNRLGQLEADEGKQHLFLETRE 521

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>Y107_ENCCU (Q8ST97) Hypothetical protein|
           ECU01_0070/ECU01_1540/ECU02_1570/ECU04_0080/ ECU08_2100
          Length = 254

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = -3

Query: 145 LPYSFSRLKYAT--HTLSFSSSSLMFIVLKALQLLNV 41
           LP+S+S ++YA   HT  + + +L+F+   A+ +L++
Sbjct: 63  LPFSYSAVQYAILLHTTPYYTLNLLFLAFAAISILSI 99

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>SYF1_ASHGO (Q75EF0) Pre-mRNA-splicing factor SYF1|
          Length = 803

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 15/184 (8%)
 Frame = +3

Query: 66   RTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPK---KVHLALLGMY 236
            R ++I   E    +W  Y     +YG P+E  ++ +F+ +L+  +     K    L   +
Sbjct: 570  RAVDIFPAETAFEIWDIYIGEALKYGLPKEQ-IRDLFESSLKMANEGVECKPFFLLYAKF 628

Query: 237  ERTK-QNELADELFDRMTKRFKTS---------CKVWLRRIQFSLTQGKDVEYIKSVVNR 386
            ER     E A  +  R  +  +T          C  W R       Q     Y +++   
Sbjct: 629  ERDNGMIETAANILHRACRAAQTMDAKRSLWTLCLNWCR-------QELGGSYARALYEE 681

Query: 387  ALLSLPQSKRIKFLTQTAILEFKCGVAEEGRS--RFELILREYPKRTDIWSVYLDQEIRL 560
             + +LP    + ++ + A +E      +  R+  ++   L       D+W  +   E+R 
Sbjct: 682  CIQALPNHVAVVYVLEYAKVEEGLKQVKRARALLQYGARLLHPANNADLWEYWELFELRH 741

Query: 561  GDTE 572
            G+ +
Sbjct: 742  GNKD 745

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>TOR1_YEAST (P35169) Phosphatidylinositol 3-kinase TOR1 (EC 2.7.1.137)|
            (PtdIns-3-kinase TOR1) (PI3-kinase TOR1) (PI3K TOR1)
          Length = 2470

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 28/150 (18%), Positives = 62/150 (41%), Gaps = 4/150 (2%)
 Frame = +3

Query: 138  YGSPREDAVKKIFQRALQYCDPKKVHLALLGMYERTKQNELADELFDRMTKRFKTSCKVW 317
            Y   +ED +  +        +P ++H  LL + E  + ++ A  +  +    +   C  +
Sbjct: 1283 YSQYQEDLIGSLCIALSSPLNPPEIHQTLLNLVEFMEHDDKALPIPTQSLGEYAERCHAY 1342

Query: 318  LRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAILEFKCGVAEEGRSRFELI 497
             + + +     K++++IK   N  + SL         T  AI     G+ +  +    L 
Sbjct: 1343 AKALHY-----KEIKFIKEPENSTIESLISINNQLNQTDAAI-----GILKHAQQHHSLQ 1392

Query: 498  LRE-YPKRTDIWSVYL---DQEIRLGDTEI 575
            L+E + ++ + W   L   ++  + GDT +
Sbjct: 1393 LKETWFEKLERWEDALHAYNEREKAGDTSV 1422


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,889,138
Number of Sequences: 219361
Number of extensions: 1808038
Number of successful extensions: 4828
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 4595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4815
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result