| Clone Name | bags31h05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 238 bits (120), Expect = 2e-59 Identities = 173/190 (91%), Gaps = 3/190 (1%) Strand = Plus / Plus Query: 33 tggatgctgatgatgatgcctatgaggctgagcctccaaaggagaagccgaagcctaaag 92 |||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||||||| Sbjct: 10790123 tggatgctgatgatga---ctatgaggccgagtctcccaaggagaagccaaagcctaaag 10790179 Query: 93 aggttgatgtagcaaagttgaaagagatcaagagacaggaggaaatcgagaagaataaac 152 ||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| || Sbjct: 10790180 aggttgatgtagctaagttgaaagagatcaagagacaggaggagatggagaagaatagac 10790239 Query: 153 ttgctttggaaaggaagaagaagcaggctgagaagcaagcagcgaaggctgcagcccgag 212 |||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||| | Sbjct: 10790240 ttgccctggaaaggaagaagaagctggccgagaagcaagcagcgaaggcagcagcccgtg 10790299 Query: 213 cacaaaagga 222 |||||||||| Sbjct: 10790300 cacaaaagga 10790309 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 410 accaagaccaaggccccgctgccaaaggcgatcctgaagaggaagaaagcccagtcgtac 469 ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct: 10790615 accaagagcaaggccccgctgccgaaggcgatcctgaggaggaagaaagcccagtcgtac 10790674 Query: 470 cggtcatgggc 480 |||| ||||| Sbjct: 10790675 tggtcctgggc 10790685 Score = 83.8 bits (42), Expect = 6e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 509 gccgtgctcgtcgccctgctcgcggcgctgggctactaccagtactaccgcccggcgagc 568 |||| ||||||||||||||| || | ||| ||||||||||||||||||| ||| |||||| Sbjct: 10790708 gccgcgctcgtcgccctgcttgccgtgctaggctactaccagtactacctcccagcgagc 10790767 Query: 569 accagcaactgatgtaaggaaa 590 | ||||||||||| ||||||| Sbjct: 10790768 gctagcaactgatggaaggaaa 10790789
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0512H04 Length = 151049 Score = 238 bits (120), Expect = 2e-59 Identities = 173/190 (91%), Gaps = 3/190 (1%) Strand = Plus / Plus Query: 33 tggatgctgatgatgatgcctatgaggctgagcctccaaaggagaagccgaagcctaaag 92 |||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||||||| Sbjct: 13846 tggatgctgatgatga---ctatgaggccgagtctcccaaggagaagccaaagcctaaag 13902 Query: 93 aggttgatgtagcaaagttgaaagagatcaagagacaggaggaaatcgagaagaataaac 152 ||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| || Sbjct: 13903 aggttgatgtagctaagttgaaagagatcaagagacaggaggagatggagaagaatagac 13962 Query: 153 ttgctttggaaaggaagaagaagcaggctgagaagcaagcagcgaaggctgcagcccgag 212 |||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||| | Sbjct: 13963 ttgccctggaaaggaagaagaagctggccgagaagcaagcagcgaaggcagcagcccgtg 14022 Query: 213 cacaaaagga 222 |||||||||| Sbjct: 14023 cacaaaagga 14032 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 410 accaagaccaaggccccgctgccaaaggcgatcctgaagaggaagaaagcccagtcgtac 469 ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct: 14338 accaagagcaaggccccgctgccgaaggcgatcctgaggaggaagaaagcccagtcgtac 14397 Query: 470 cggtcatgggc 480 |||| ||||| Sbjct: 14398 tggtcctgggc 14408 Score = 83.8 bits (42), Expect = 6e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 509 gccgtgctcgtcgccctgctcgcggcgctgggctactaccagtactaccgcccggcgagc 568 |||| ||||||||||||||| || | ||| ||||||||||||||||||| ||| |||||| Sbjct: 14431 gccgcgctcgtcgccctgcttgccgtgctaggctactaccagtactacctcccagcgagc 14490 Query: 569 accagcaactgatgtaaggaaa 590 | ||||||||||| ||||||| Sbjct: 14491 gctagcaactgatggaaggaaa 14512
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0085I16 Length = 141701 Score = 238 bits (120), Expect = 2e-59 Identities = 173/190 (91%), Gaps = 3/190 (1%) Strand = Plus / Plus Query: 33 tggatgctgatgatgatgcctatgaggctgagcctccaaaggagaagccgaagcctaaag 92 |||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||||||| Sbjct: 126741 tggatgctgatgatga---ctatgaggccgagtctcccaaggagaagccaaagcctaaag 126797 Query: 93 aggttgatgtagcaaagttgaaagagatcaagagacaggaggaaatcgagaagaataaac 152 ||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| || Sbjct: 126798 aggttgatgtagctaagttgaaagagatcaagagacaggaggagatggagaagaatagac 126857 Query: 153 ttgctttggaaaggaagaagaagcaggctgagaagcaagcagcgaaggctgcagcccgag 212 |||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||| | Sbjct: 126858 ttgccctggaaaggaagaagaagctggccgagaagcaagcagcgaaggcagcagcccgtg 126917 Query: 213 cacaaaagga 222 |||||||||| Sbjct: 126918 cacaaaagga 126927 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 410 accaagaccaaggccccgctgccaaaggcgatcctgaagaggaagaaagcccagtcgtac 469 ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct: 127233 accaagagcaaggccccgctgccgaaggcgatcctgaggaggaagaaagcccagtcgtac 127292 Query: 470 cggtcatgggc 480 |||| ||||| Sbjct: 127293 tggtcctgggc 127303 Score = 83.8 bits (42), Expect = 6e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 509 gccgtgctcgtcgccctgctcgcggcgctgggctactaccagtactaccgcccggcgagc 568 |||| ||||||||||||||| || | ||| ||||||||||||||||||| ||| |||||| Sbjct: 127326 gccgcgctcgtcgccctgcttgccgtgctaggctactaccagtactacctcccagcgagc 127385 Query: 569 accagcaactgatgtaaggaaa 590 | ||||||||||| ||||||| Sbjct: 127386 gctagcaactgatggaaggaaa 127407
>dbj|AB117987.1| Oryza sativa (japonica cultivar-group) bip103 mRNA for BRI1-KD interacting protein 103, complete cds Length = 2366 Score = 238 bits (120), Expect = 2e-59 Identities = 173/190 (91%), Gaps = 3/190 (1%) Strand = Plus / Plus Query: 33 tggatgctgatgatgatgcctatgaggctgagcctccaaaggagaagccgaagcctaaag 92 |||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||||||| Sbjct: 1432 tggatgctgatgatga---ctatgaggccgagtctcccaaggagaagccaaagcctaaag 1488 Query: 93 aggttgatgtagcaaagttgaaagagatcaagagacaggaggaaatcgagaagaataaac 152 ||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| || Sbjct: 1489 aggttgatgtagctaagttgaaagagatcaagagacaggaggagatggagaagaatagac 1548 Query: 153 ttgctttggaaaggaagaagaagcaggctgagaagcaagcagcgaaggctgcagcccgag 212 |||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||| | Sbjct: 1549 ttgccctggaaaggaagaagaagctggccgagaagcaagcagcgaaggcagcagcccgtg 1608 Query: 213 cacaaaagga 222 |||||||||| Sbjct: 1609 cacaaaagga 1618 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 410 accaagaccaaggccccgctgccaaaggcgatcctgaagaggaagaaagcccagtcgtac 469 ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct: 1815 accaagagcaaggccccgctgccgaaggcgatcctgaggaggaagaaagcccagtcgtac 1874 Query: 470 cggtcatgggc 480 |||| ||||| Sbjct: 1875 tggtcctgggc 1885 Score = 83.8 bits (42), Expect = 6e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 509 gccgtgctcgtcgccctgctcgcggcgctgggctactaccagtactaccgcccggcgagc 568 |||| ||||||||||||||| || | ||| ||||||||||||||||||| ||| |||||| Sbjct: 1908 gccgcgctcgtcgccctgcttgccgtgctaggctactaccagtactacctcccagcgagc 1967 Query: 569 accagcaactgatgtaaggaaa 590 | ||||||||||| ||||||| Sbjct: 1968 gctagcaactgatggaaggaaa 1989
>dbj|AK100527.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101D09, full insert sequence Length = 2295 Score = 238 bits (120), Expect = 2e-59 Identities = 173/190 (91%), Gaps = 3/190 (1%) Strand = Plus / Plus Query: 33 tggatgctgatgatgatgcctatgaggctgagcctccaaaggagaagccgaagcctaaag 92 |||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||||||| Sbjct: 1434 tggatgctgatgatga---ctatgaggccgagtctcccaaggagaagccaaagcctaaag 1490 Query: 93 aggttgatgtagcaaagttgaaagagatcaagagacaggaggaaatcgagaagaataaac 152 ||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| || Sbjct: 1491 aggttgatgtagctaagttgaaagagatcaagagacaggaggagatggagaagaatagac 1550 Query: 153 ttgctttggaaaggaagaagaagcaggctgagaagcaagcagcgaaggctgcagcccgag 212 |||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||| | Sbjct: 1551 ttgccctggaaaggaagaagaagctggccgagaagcaagcagcgaaggcagcagcccgtg 1610 Query: 213 cacaaaagga 222 |||||||||| Sbjct: 1611 cacaaaagga 1620 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 410 accaagaccaaggccccgctgccaaaggcgatcctgaagaggaagaaagcccagtcgtac 469 ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct: 1817 accaagagcaaggccccgctgccgaaggcgatcctgaggaggaagaaagcccagtcgtac 1876 Query: 470 cggtcatgggc 480 |||| ||||| Sbjct: 1877 tggtcctgggc 1887 Score = 83.8 bits (42), Expect = 6e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 509 gccgtgctcgtcgccctgctcgcggcgctgggctactaccagtactaccgcccggcgagc 568 |||| ||||||||||||||| || | ||| ||||||||||||||||||| ||| |||||| Sbjct: 1910 gccgcgctcgtcgccctgcttgccgtgctaggctactaccagtactacctcccagcgagc 1969 Query: 569 accagcaactgatgtaaggaaa 590 | ||||||||||| ||||||| Sbjct: 1970 gctagcaactgatggaaggaaa 1991
>dbj|AK059253.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H05, full insert sequence Length = 1352 Score = 238 bits (120), Expect = 2e-59 Identities = 173/190 (91%), Gaps = 3/190 (1%) Strand = Plus / Plus Query: 33 tggatgctgatgatgatgcctatgaggctgagcctccaaaggagaagccgaagcctaaag 92 |||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||||||| Sbjct: 510 tggatgctgatgatga---ctatgaggccgagtctcccaaggagaagccaaagcctaaag 566 Query: 93 aggttgatgtagcaaagttgaaagagatcaagagacaggaggaaatcgagaagaataaac 152 ||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| || Sbjct: 567 aggttgatgtagctaagttgaaagagatcaagagacaggaggagatggagaagaatagac 626 Query: 153 ttgctttggaaaggaagaagaagcaggctgagaagcaagcagcgaaggctgcagcccgag 212 |||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||| | Sbjct: 627 ttgccctggaaaggaagaagaagctggccgagaagcaagcagcgaaggcagcagcccgtg 686 Query: 213 cacaaaagga 222 |||||||||| Sbjct: 687 cacaaaagga 696 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 410 accaagaccaaggccccgctgccaaaggcgatcctgaagaggaagaaagcccagtcgtac 469 ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct: 893 accaagagcaaggccccgctgccgaaggcgatcctgaggaggaagaaagcccagtcgtac 952 Query: 470 cggtcatgggc 480 |||| ||||| Sbjct: 953 tggtcctgggc 963 Score = 83.8 bits (42), Expect = 6e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 509 gccgtgctcgtcgccctgctcgcggcgctgggctactaccagtactaccgcccggcgagc 568 |||| ||||||||||||||| || | ||| ||||||||||||||||||| ||| |||||| Sbjct: 986 gccgcgctcgtcgccctgcttgccgtgctaggctactaccagtactacctcccagcgagc 1045 Query: 569 accagcaactgatgtaaggaaa 590 | ||||||||||| ||||||| Sbjct: 1046 gctagcaactgatggaaggaaa 1067
>gb|AY105847.1| Zea mays PCO081230 mRNA sequence Length = 1699 Score = 157 bits (79), Expect = 5e-35 Identities = 177/209 (84%), Gaps = 3/209 (1%) Strand = Plus / Plus Query: 17 aaggtaaaagcttctgtggatgctgatgatgatgcctatgaggctgagcctccaaaggag 76 |||| ||||||| || | ||||||||||||||| |||||||| ||||| | |||||| Sbjct: 815 aaggcaaaagctgctcttgatgctgatgatgat---tatgaggccgagcccctgaaggag 871 Query: 77 aagccgaagcctaaagaggttgatgtagcaaagttgaaagagatcaagagacaggaggaa 136 ||| | ||||||| |||| |||||| || |||||||||||||| ||||| |||||||| Sbjct: 872 aaggcaaagcctacggaggctgatgtggctaagttgaaagagatgaagaggcaggaggag 931 Query: 137 atcgagaagaataaacttgctttggaaaggaagaagaagcaggctgagaagcaagcagcg 196 || |||||||| || ||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 932 attgagaagaacaagcttgcattggagaggaagaagaagcaggctgagaagcaagcagca 991 Query: 197 aaggctgcagcccgagcacaaaaggaagc 225 || || || ||||| ||||| |||||||| Sbjct: 992 aaagccgcggcccgggcacagaaggaagc 1020 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 509 gccgtgctcgtcgccctgctcgcggcgctgggctactaccagtactaccgcccggcgagc 568 |||||||| || ||||| ||||||| |||||| |||||||||||||||| ||| |||| Sbjct: 1299 gccgtgctggttgccctcctcgcggtgctgggatactaccagtactacctcccagcgaat 1358 Query: 569 accagcaactga 580 ||||||||||| Sbjct: 1359 gccagcaactga 1370 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 434 aaggcgatcctgaagaggaagaaagcccagtcgtaccggtcatgggc 480 ||||||||||||||||||||||| || ||||| ||| |||||||||| Sbjct: 1230 aaggcgatcctgaagaggaagaaggcgcagtcctactggtcatgggc 1276
>ref|XM_507220.1| PREDICTED Oryza sativa (japonica cultivar-group), P0671F11.9 mRNA Length = 2293 Score = 93.7 bits (47), Expect = 6e-16 Identities = 112/133 (84%), Gaps = 3/133 (2%) Strand = Plus / Plus Query: 61 tgagcctccaaaggagaagccgaagcctaaagaggttgatgtagcaaagttgaaagagat 120 |||||| |||||||||||| | || ||||||| | |||| |||||| ||||||||||| Sbjct: 1471 tgagcccccaaaggagaagacaaaacctaaag---tagatgaagcaaaattgaaagagat 1527 Query: 121 caagagacaggaggaaatcgagaagaataaacttgctttggaaaggaagaagaagcaggc 180 ||||||||||| || || || ||||| || || || |||||||||||||||||||||| Sbjct: 1528 gaagagacaggaagagatagaaaagaacaagctggcactggaaaggaagaagaagcaggc 1587 Query: 181 tgagaagcaagca 193 |||||| |||||| Sbjct: 1588 tgagaaacaagca 1600 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 434 aaggcgatcctgaagaggaagaaa 457 |||||| ||||||||||||||||| Sbjct: 1835 aaggcggtcctgaagaggaagaaa 1858
>ref|XM_482186.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2281 Score = 93.7 bits (47), Expect = 6e-16 Identities = 112/133 (84%), Gaps = 3/133 (2%) Strand = Plus / Plus Query: 61 tgagcctccaaaggagaagccgaagcctaaagaggttgatgtagcaaagttgaaagagat 120 |||||| |||||||||||| | || ||||||| | |||| |||||| ||||||||||| Sbjct: 1506 tgagcccccaaaggagaagacaaaacctaaag---tagatgaagcaaaattgaaagagat 1562 Query: 121 caagagacaggaggaaatcgagaagaataaacttgctttggaaaggaagaagaagcaggc 180 ||||||||||| || || || ||||| || || || |||||||||||||||||||||| Sbjct: 1563 gaagagacaggaagagatagaaaagaacaagctggcactggaaaggaagaagaagcaggc 1622 Query: 181 tgagaagcaagca 193 |||||| |||||| Sbjct: 1623 tgagaaacaagca 1635 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 434 aaggcgatcctgaagaggaagaaa 457 |||||| ||||||||||||||||| Sbjct: 1870 aaggcggtcctgaagaggaagaaa 1893
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 93.7 bits (47), Expect = 6e-16 Identities = 112/133 (84%), Gaps = 3/133 (2%) Strand = Plus / Plus Query: 61 tgagcctccaaaggagaagccgaagcctaaagaggttgatgtagcaaagttgaaagagat 120 |||||| |||||||||||| | || ||||||| | |||| |||||| ||||||||||| Sbjct: 18472603 tgagcccccaaaggagaagacaaaacctaaag---tagatgaagcaaaattgaaagagat 18472659 Query: 121 caagagacaggaggaaatcgagaagaataaacttgctttggaaaggaagaagaagcaggc 180 ||||||||||| || || || ||||| || || || |||||||||||||||||||||| Sbjct: 18472660 gaagagacaggaagagatagaaaagaacaagctggcactggaaaggaagaagaagcaggc 18472719 Query: 181 tgagaagcaagca 193 |||||| |||||| Sbjct: 18472720 tgagaaacaagca 18472732 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 434 aaggcgatcctgaagaggaagaaa 457 |||||| ||||||||||||||||| Sbjct: 18473082 aaggcggtcctgaagaggaagaaa 18473105
>dbj|AB117988.1| Oryza sativa (japonica cultivar-group) bip131 mRNA for BRI1-KD interacting protein 131, complete cds Length = 2275 Score = 93.7 bits (47), Expect = 6e-16 Identities = 112/133 (84%), Gaps = 3/133 (2%) Strand = Plus / Plus Query: 61 tgagcctccaaaggagaagccgaagcctaaagaggttgatgtagcaaagttgaaagagat 120 |||||| |||||||||||| | || ||||||| | |||| |||||| ||||||||||| Sbjct: 1477 tgagcccccaaaggagaagacaaaacctaaag---tagatgaagcaaaattgaaagagat 1533 Query: 121 caagagacaggaggaaatcgagaagaataaacttgctttggaaaggaagaagaagcaggc 180 ||||||||||| || || || ||||| || || || |||||||||||||||||||||| Sbjct: 1534 gaagagacaggaagagatagaaaagaacaagctggcactggaaaggaagaagaagcaggc 1593 Query: 181 tgagaagcaagca 193 |||||| |||||| Sbjct: 1594 tgagaaacaagca 1606 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 434 aaggcgatcctgaagaggaagaaa 457 |||||| ||||||||||||||||| Sbjct: 1841 aaggcggtcctgaagaggaagaaa 1864
>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0671F11 Length = 159409 Score = 93.7 bits (47), Expect = 6e-16 Identities = 112/133 (84%), Gaps = 3/133 (2%) Strand = Plus / Plus Query: 61 tgagcctccaaaggagaagccgaagcctaaagaggttgatgtagcaaagttgaaagagat 120 |||||| |||||||||||| | || ||||||| | |||| |||||| ||||||||||| Sbjct: 54626 tgagcccccaaaggagaagacaaaacctaaag---tagatgaagcaaaattgaaagagat 54682 Query: 121 caagagacaggaggaaatcgagaagaataaacttgctttggaaaggaagaagaagcaggc 180 ||||||||||| || || || ||||| || || || |||||||||||||||||||||| Sbjct: 54683 gaagagacaggaagagatagaaaagaacaagctggcactggaaaggaagaagaagcaggc 54742 Query: 181 tgagaagcaagca 193 |||||| |||||| Sbjct: 54743 tgagaaacaagca 54755 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 434 aaggcgatcctgaagaggaagaaa 457 |||||| ||||||||||||||||| Sbjct: 55105 aaggcggtcctgaagaggaagaaa 55128
>dbj|AK099893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113F23, full insert sequence Length = 2281 Score = 93.7 bits (47), Expect = 6e-16 Identities = 112/133 (84%), Gaps = 3/133 (2%) Strand = Plus / Plus Query: 61 tgagcctccaaaggagaagccgaagcctaaagaggttgatgtagcaaagttgaaagagat 120 |||||| |||||||||||| | || ||||||| | |||| |||||| ||||||||||| Sbjct: 1506 tgagcccccaaaggagaagacaaaacctaaag---tagatgaagcaaaattgaaagagat 1562 Query: 121 caagagacaggaggaaatcgagaagaataaacttgctttggaaaggaagaagaagcaggc 180 ||||||||||| || || || ||||| || || || |||||||||||||||||||||| Sbjct: 1563 gaagagacaggaagagatagaaaagaacaagctggcactggaaaggaagaagaagcaggc 1622 Query: 181 tgagaagcaagca 193 |||||| |||||| Sbjct: 1623 tgagaaacaagca 1635 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 434 aaggcgatcctgaagaggaagaaa 457 |||||| ||||||||||||||||| Sbjct: 1870 aaggcggtcctgaagaggaagaaa 1893
>dbj|AK067513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110G07, full insert sequence Length = 2293 Score = 93.7 bits (47), Expect = 6e-16 Identities = 112/133 (84%), Gaps = 3/133 (2%) Strand = Plus / Plus Query: 61 tgagcctccaaaggagaagccgaagcctaaagaggttgatgtagcaaagttgaaagagat 120 |||||| |||||||||||| | || ||||||| | |||| |||||| ||||||||||| Sbjct: 1471 tgagcccccaaaggagaagacaaaacctaaag---tagatgaagcaaaattgaaagagat 1527 Query: 121 caagagacaggaggaaatcgagaagaataaacttgctttggaaaggaagaagaagcaggc 180 ||||||||||| || || || ||||| || || || |||||||||||||||||||||| Sbjct: 1528 gaagagacaggaagagatagaaaagaacaagctggcactggaaaggaagaagaagcaggc 1587 Query: 181 tgagaagcaagca 193 |||||| |||||| Sbjct: 1588 tgagaaacaagca 1600 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 434 aaggcgatcctgaagaggaagaaa 457 |||||| ||||||||||||||||| Sbjct: 1835 aaggcggtcctgaagaggaagaaa 1858
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 408 tcaccaagaccaaggccccgctg 430 ||||||||||||||||||||||| Sbjct: 2663148 tcaccaagaccaaggccccgctg 2663170
>gb|AC108404.8| Mus musculus chromosome 18, clone RP24-491I16, complete sequence Length = 196638 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 151 acttgctttggaaaggaagaaga 173 ||||||||||||||||||||||| Sbjct: 112408 acttgctttggaaaggaagaaga 112386
>gb|AC101682.8| Mus musculus chromosome 18, clone RP23-183C23, complete sequence Length = 227840 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 151 acttgctttggaaaggaagaaga 173 ||||||||||||||||||||||| Sbjct: 33843 acttgctttggaaaggaagaaga 33865
>ref|XM_464548.1| Oryza sativa (japonica cultivar-group), mRNA Length = 846 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 502 cgccgtggccgtgctcgtcgcc 523 |||||||||||||||||||||| Sbjct: 318 cgccgtggccgtgctcgtcgcc 339
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 166 gaagaagaagcaggctgagaag 187 |||||||||||||||||||||| Sbjct: 1306538 gaagaagaagcaggctgagaag 1306517
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 502 cgccgtggccgtgctcgtcgcc 523 |||||||||||||||||||||| Sbjct: 5819125 cgccgtggccgtgctcgtcgcc 5819104
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 502 cgccgtggccgtgctcgtcgcc 523 |||||||||||||||||||||| Sbjct: 48927 cgccgtggccgtgctcgtcgcc 48906
>gb|BC108597.1| Xenopus laevis cDNA clone MGC:131108 IMAGE:7982859, complete cds Length = 1735 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 aagagatcaagagacaggagg 134 ||||||||||||||||||||| Sbjct: 515 aagagatcaagagacaggagg 535
>emb|AL163281.2|HS21C081 Homo sapiens chromosome 21 segment HS21C081 Length = 340000 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 112 gaaagagatcaagagacaggaggaa 136 ||||||||| ||||||||||||||| Sbjct: 184213 gaaagagataaagagacaggaggaa 184189
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 517 cgtcgccctgctcgcggcgct 537 ||||||||||||||||||||| Sbjct: 14211 cgtcgccctgctcgcggcgct 14231
>emb|AL022243.3|SPCC364 S.pombe chromosome III cosmid c364 Length = 14999 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 gatcctgaagaggaagaaagc 459 ||||||||||||||||||||| Sbjct: 13749 gatcctgaagaggaagaaagc 13769
>gb|AF064862.2| Homo sapiens chromosome 21 clone PAC 31P10 map 21q22.3, complete sequence Length = 145861 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 112 gaaagagatcaagagacaggaggaa 136 ||||||||| ||||||||||||||| Sbjct: 30051 gaaagagataaagagacaggaggaa 30027
>ref|NM_001022836.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC364.01), partial mRNA Length = 963 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 gatcctgaagaggaagaaagc 459 ||||||||||||||||||||| Sbjct: 356 gatcctgaagaggaagaaagc 336
>dbj|AB032541.1| Nicotiana tabacum B37 mRNA for MCM protein-like protein, complete cds Length = 3224 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 ctgatgatgatgcctatgagg 59 ||||||||||||||||||||| Sbjct: 628 ctgatgatgatgcctatgagg 648
>ref|NM_118885.2| Arabidopsis thaliana PPI1 (PROTON PUMP INTERACTOR 1) AT4G27500 (PPI1) mRNA, complete cds Length = 1964 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 159 tggaaaggaagaagaagcaggctgagaa 186 |||||||||||||||||| ||| ||||| Sbjct: 1585 tggaaaggaagaagaagctggcagagaa 1612
>ref|NM_196333.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0011L09.3), mRNA Length = 492 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 24 aagcttctgtggatgctgatgatgatgc 51 ||||| ||||||||| |||||||||||| Sbjct: 440 aagctcctgtggatgatgatgatgatgc 413
>gb|AC117224.3| Mus musculus BAC clone RP23-356N8 from chromosome 16, complete sequence Length = 197831 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gatcaagagacaggaggaaa 137 |||||||||||||||||||| Sbjct: 15349 gatcaagagacaggaggaaa 15368
>gb|AC099668.2| Homo sapiens chromosome 3 clone RP11-901L6, complete sequence Length = 242222 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 aagagatcaagagacaggaggaaa 137 |||||| ||||||||||||||||| Sbjct: 188702 aagagagcaagagacaggaggaaa 188725
>gb|AC157596.5| Mus musculus BAC clone RP23-240B9 from chromosome 16, complete sequence Length = 204275 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 gatcaagagacaggaggaaa 137 |||||||||||||||||||| Sbjct: 103286 gatcaagagacaggaggaaa 103267
>emb|Z85996.1|HS431A14 Human DNA sequence from clone RP3-431A14 on chromosome 6p21 Contains the CDKN1A gene for cyclin-dependent kinase inhibitor 1A, the gene for a novel protein similar to ras family protein, the gene for a novel copine-like protein (KIA1599), a galanin receptor pseudogene, the 3' end of the PPIL1 gene for peptidylprolyl isomerase protein and 2 CpG islands, complete sequence Length = 195364 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 168 agaagaagcaggctgagaagcaag 191 ||||||||||| |||||||||||| Sbjct: 194751 agaagaagcagactgagaagcaag 194774
>gb|AY143914.1| Arabidopsis thaliana At4g27500/F27G19_100 mRNA, complete cds Length = 1839 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 159 tggaaaggaagaagaagcaggctgagaa 186 |||||||||||||||||| ||| ||||| Sbjct: 1460 tggaaaggaagaagaagctggcagagaa 1487
>emb|AL122034.29|HSDJ90K10 Human DNA sequence from clone RP1-90K10 on chromosome 6 Contains the PPIL1 gene for peptidylprolyl isomerase (cyclophilin)-like 1 (CYPL1, CGI-124), gene FLJ25357, a novel gene, a novel pseudogene, the gene for a novel SCP-like extracellular protein, the gene for mitochondrial carrier homolog 1 (MTCH1) (CGI-64) and two CpG islands, complete sequence Length = 133154 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 168 agaagaagcaggctgagaagcaag 191 ||||||||||| |||||||||||| Sbjct: 1387 agaagaagcagactgagaagcaag 1410
>emb|AL035667.12|HS805C22 Human DNA sequence from clone RP4-805C22 on chromosome 20q13.2-13.32 Contains the 3' end of the gene for downstream of tyrosine kinase 5 (DOK5) protein, complete sequence Length = 135391 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 attgaacaaagaacagaagcagaa 387 |||||| ||||||||||||||||| Sbjct: 13630 attgaaaaaagaacagaagcagaa 13607
>ref|XM_781294.1| PREDICTED: Strongylocentrotus purpuratus similar to echinoderm microtubule associated protein like 2 (LOC581284), mRNA Length = 2025 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 ctttggaaaggaagaagaag 175 |||||||||||||||||||| Sbjct: 1758 ctttggaaaggaagaagaag 1777
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 cggcgctgggctactaccag 550 |||||||||||||||||||| Sbjct: 2771591 cggcgctgggctactaccag 2771610
>emb|AL161571.2|ATCHRIV67 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 67 Length = 200001 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 159 tggaaaggaagaagaagcaggctgagaa 186 |||||||||||||||||| ||| ||||| Sbjct: 55909 tggaaaggaagaagaagctggcagagaa 55936
>emb|AL078467.1|ATF27G19 Arabidopsis thaliana DNA chromosome 4, BAC clone F27G19 (ESSA project) Length = 82381 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 159 tggaaaggaagaagaagcaggctgagaa 186 |||||||||||||||||| ||| ||||| Sbjct: 69015 tggaaaggaagaagaagctggcagagaa 69042
>emb|AL596324.7| Mouse DNA sequence from clone RP23-324M14 on chromosome 11, complete sequence Length = 204453 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 ggaagaagaagcaggctgagaagc 188 |||||||||||||||| ||||||| Sbjct: 145837 ggaagaagaagcaggcagagaagc 145860
>emb|CR391977.5| Zebrafish DNA sequence from clone DKEYP-73B11 in linkage group 25, complete sequence Length = 189510 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 440 atcctgaagaggaagaaagcccag 463 |||||||| ||||||||||||||| Sbjct: 164636 atcctgaaaaggaagaaagcccag 164613
>gb|AC104452.2| Homo sapiens chromosome 3 clone RP11-949J7, complete sequence Length = 186563 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 aagagatcaagagacaggaggaaa 137 |||||| ||||||||||||||||| Sbjct: 19886 aagagagcaagagacaggaggaaa 19909
>gb|AC122144.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0011L09, complete sequence Length = 121055 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 24 aagcttctgtggatgctgatgatgatgc 51 ||||| ||||||||| |||||||||||| Sbjct: 59236 aagctcctgtggatgatgatgatgatgc 59263
>gb|AC092388.5| Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence Length = 177565 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 24 aagcttctgtggatgctgatgatgatgc 51 ||||| ||||||||| |||||||||||| Sbjct: 765 aagctcctgtggatgatgatgatgatgc 738
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 gcccggcgagcaccagcaac 577 |||||||||||||||||||| Sbjct: 251669 gcccggcgagcaccagcaac 251688
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 511 cgtgctcgtcgccctgctcgcggc 534 |||||||||||| ||||||||||| Sbjct: 1908844 cgtgctcgtcgcgctgctcgcggc 1908821
>dbj|AK220843.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-38-F07 Length = 570 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 159 tggaaaggaagaagaagcaggctgagaa 186 |||||||||||||||||| ||| ||||| Sbjct: 38 tggaaaggaagaagaagctggcagagaa 65
>gb|AY050365.1| Arabidopsis thaliana AT4g27500/F27G19_100 mRNA, complete cds Length = 2210 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 159 tggaaaggaagaagaagcaggctgagaa 186 |||||||||||||||||| ||| ||||| Sbjct: 1585 tggaaaggaagaagaagctggcagagaa 1612
>emb|BX323880.7| Zebrafish DNA sequence from clone CH211-139K8 in linkage group 2, complete sequence Length = 166870 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 cagcaactgatgtaaggaaa 590 |||||||||||||||||||| Sbjct: 111511 cagcaactgatgtaaggaaa 111530
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 24 aagcttctgtggatgctgatgatgatgc 51 ||||| ||||||||| |||||||||||| Sbjct: 12762797 aagctcctgtggatgatgatgatgatgc 12762824
>emb|BX829254.1|CNS0A4EF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZE04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 493 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 159 tggaaaggaagaagaagcaggctgagaa 186 |||||||||||||||||| ||| ||||| Sbjct: 2 tggaaaggaagaagaagctggcagagaa 29
>gb|AC018690.5| Homo sapiens BAC clone RP11-527J8 from 2, complete sequence Length = 233117 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 agcaactgatgtaaggaaaa 591 |||||||||||||||||||| Sbjct: 181458 agcaactgatgtaaggaaaa 181477
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 gccgtgctcgtcgccctgct 528 |||||||||||||||||||| Sbjct: 3123467 gccgtgctcgtcgccctgct 3123448
>emb|AJ002020.2|ATAJ2020 Arabidopsis thaliana mRNA for proton pump interactor, partial Length = 2117 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 159 tggaaaggaagaagaagcaggctgagaa 186 |||||||||||||||||| ||| ||||| Sbjct: 1565 tggaaaggaagaagaagctggcagagaa 1592
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 cgtggccgtgctcgtcgccc 524 |||||||||||||||||||| Sbjct: 10370 cgtggccgtgctcgtcgccc 10389
>gb|AF031882.1|AF031882 Euprymna morsei internal transcribed spacer region Length = 1285 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 508 ggccgtgctcgtcgccctgctcgcggcg 535 ||||||||||||||| ||||||| |||| Sbjct: 1018 ggccgtgctcgtcgcgctgctcgaggcg 991
>gb|AF031881.1|AF031881 Euprymna scolopes internal transcribed spacer region Length = 1359 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 508 ggccgtgctcgtcgccctgctcgcggcg 535 ||||||||||||||| ||||||| |||| Sbjct: 1096 ggccgtgctcgtcgcgctgctcgaggcg 1069
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 24 aagcttctgtggatgctgatgatgatgc 51 ||||| ||||||||| |||||||||||| Sbjct: 12770137 aagctcctgtggatgatgatgatgatgc 12770164
>emb|AL671975.12| Mouse DNA sequence from clone RP23-25O15 on chromosome X, complete sequence Length = 231530 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 aagcaggctgagaagcaagc 192 |||||||||||||||||||| Sbjct: 50845 aagcaggctgagaagcaagc 50864 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,022,109 Number of Sequences: 3902068 Number of extensions: 6022109 Number of successful extensions: 153957 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 153201 Number of HSP's gapped (non-prelim): 748 length of query: 602 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 579 effective length of database: 17,143,297,704 effective search space: 9925969370616 effective search space used: 9925969370616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)