ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags31f24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEL1L_MOUSE (Q9Z2G6) Sel-1 homolog precursor (Suppressor of lin-... 31 2.7
2SEL1L_RAT (Q80Z70) Sel-1 homolog precursor (Suppressor of lin-12... 31 2.7
3SEL1L_MESAU (Q9ESM7) Sel-1 homolog precursor (Suppressor of lin-... 31 2.7
4SEL1L_HUMAN (Q9UBV2) Sel-1 homolog precursor (Suppressor of lin-... 31 2.7
5Y395_MYCGE (P47635) Hypothetical lipoprotein MG395 precursor 30 4.6
6VGB_BPAL3 (P31278) Scaffolding protein B (GPB) 29 7.8

>SEL1L_MOUSE (Q9Z2G6) Sel-1 homolog precursor (Suppressor of lin-12-like|
           protein) (Sel-1L)
          Length = 790

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
 Frame = +3

Query: 135 GSGVESNQQEKLK------SLAEGKLVSFCGNILKEASDLQPSNGETASADIHRVLDLRA 296
           G GVE N Q          +      ++F G +  E SD+ P + ETA     +  D+  
Sbjct: 383 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 442

Query: 297 PV 302
           PV
Sbjct: 443 PV 444



to top

>SEL1L_RAT (Q80Z70) Sel-1 homolog precursor (Suppressor of lin-12-like|
           protein) (Sel-1L)
          Length = 794

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
 Frame = +3

Query: 135 GSGVESNQQEKLK------SLAEGKLVSFCGNILKEASDLQPSNGETASADIHRVLDLRA 296
           G GVE N Q          +      ++F G +  E SD+ P + ETA     +  D+  
Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446

Query: 297 PV 302
           PV
Sbjct: 447 PV 448



to top

>SEL1L_MESAU (Q9ESM7) Sel-1 homolog precursor (Suppressor of lin-12-like|
           protein) (Sel-1L)
          Length = 794

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
 Frame = +3

Query: 135 GSGVESNQQEKLK------SLAEGKLVSFCGNILKEASDLQPSNGETASADIHRVLDLRA 296
           G GVE N Q          +      ++F G +  E SD+ P + ETA     +  D+  
Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446

Query: 297 PV 302
           PV
Sbjct: 447 PV 448



to top

>SEL1L_HUMAN (Q9UBV2) Sel-1 homolog precursor (Suppressor of lin-12-like|
           protein) (Sel-1L)
          Length = 794

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
 Frame = +3

Query: 135 GSGVESNQQEKLK------SLAEGKLVSFCGNILKEASDLQPSNGETASADIHRVLDLRA 296
           G GVE N Q          +      ++F G +  E SD+ P + ETA     +  D+  
Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446

Query: 297 PV 302
           PV
Sbjct: 447 PV 448



to top

>Y395_MYCGE (P47635) Hypothetical lipoprotein MG395 precursor|
          Length = 524

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 72  LEILHKSTVHNGANGSSEETNGSGVESNQQEKLKSLAEGKLVSFCGNILKEASDL 236
           +E  + ST  N A    +E +  G E NQQ K++     +   F  + + E SD+
Sbjct: 37  IEEKNDSTTDNNATPFKDEQSDQGTEVNQQPKVEQKVYNRNFKFNTSFIPEESDI 91



to top

>VGB_BPAL3 (P31278) Scaffolding protein B (GPB)|
          Length = 117

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 33  NLLRQELAGTTIYLEILHKSTVHNGA--NGSSEETNGSGVESNQQEKLKSLAEGK 191
           NL  + ++GT        +S   NGA  NGSSE+   SG E NQ     S+++ +
Sbjct: 8   NLSEERISGT-------QQSETRNGAPVNGSSEQQGTSGTEPNQLRFQSSVSDSE 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,988,093
Number of Sequences: 219361
Number of extensions: 1549516
Number of successful extensions: 4148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4146
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top