ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31f21 |
|---|---|
| Clone Library Name | barley_pub |
>NIPA2_PONPY (Q5R7Q3) Non-imprinted in Prader-Willi/Angelman syndrome region| protein 2 homolog Length = 360 Score = 119 bits (298), Expect = 6e-27 Identities = 61/150 (40%), Positives = 88/150 (58%), Gaps = 1/150 (0%) Frame = +1 Query: 136 GLALAVSSSAFIGASFIVKKMGLRRAADSG-VRAGYGGYSYLVEPLWWIGMISMIVGEIX 312 GL LA+SSS FIG SFI+KK GL R A G +RAG GG++YL E LWW G++SM GE+ Sbjct: 13 GLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVA 72 Query: 313 XXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSITIALHAPQ 492 LVTP E+L+ G +GC+L ++GS + +HAP+ Sbjct: 73 NFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPK 132 Query: 493 ERDIDSVREVWDLATEPAFLSYATVVVVAA 582 E +I+++ E+ +P F+ +AT+VV+ A Sbjct: 133 EEEIETLNEMSHKLGDPGFVVFATLVVIVA 162
>NIPA2_HUMAN (Q8N8Q9) Non-imprinted in Prader-Willi/Angelman syndrome region| protein 2 Length = 360 Score = 119 bits (298), Expect = 6e-27 Identities = 61/150 (40%), Positives = 88/150 (58%), Gaps = 1/150 (0%) Frame = +1 Query: 136 GLALAVSSSAFIGASFIVKKMGLRRAADSG-VRAGYGGYSYLVEPLWWIGMISMIVGEIX 312 GL LA+SSS FIG SFI+KK GL R A G +RAG GG++YL E LWW G++SM GE+ Sbjct: 13 GLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVA 72 Query: 313 XXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSITIALHAPQ 492 LVTP E+L+ G +GC+L ++GS + +HAP+ Sbjct: 73 NFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPK 132 Query: 493 ERDIDSVREVWDLATEPAFLSYATVVVVAA 582 E +I+++ E+ +P F+ +AT+VV+ A Sbjct: 133 EEEIETLNEMSHKLGDPGFVVFATLVVIVA 162
>NIPA2_MOUSE (Q9JJC8) Non-imprinted in Prader-Willi/Angelman syndrome region| protein 2 homolog Length = 359 Score = 117 bits (293), Expect = 2e-26 Identities = 60/150 (40%), Positives = 87/150 (58%), Gaps = 1/150 (0%) Frame = +1 Query: 136 GLALAVSSSAFIGASFIVKKMGLRRAADSG-VRAGYGGYSYLVEPLWWIGMISMIVGEIX 312 GL LA++SS FIG SFI+KK GL R A G +RAG GG++YL E LWW G++SM GE+ Sbjct: 13 GLGLAMTSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVA 72 Query: 313 XXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSITIALHAPQ 492 LVTP E+L+ G +GC+L ++GS + +HAP+ Sbjct: 73 NFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPK 132 Query: 493 ERDIDSVREVWDLATEPAFLSYATVVVVAA 582 E +I+++ E+ +P F+ +AT VV+ A Sbjct: 133 EEEIETLNEMSHKLGDPGFVVFATFVVIVA 162
>NIPA1_HUMAN (Q7RTP0) Non-imprinted in Prader-Willi/Angelman syndrome region| protein 1 Length = 329 Score = 93.6 bits (231), Expect = 4e-19 Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 3/168 (1%) Frame = +1 Query: 82 AAPSSSAGFGGMSTDNAK---GLALAVSSSAFIGASFIVKKMGLRRAADSGVRAGYGGYS 252 AA +++AG G S A GL +AV SS G++F+++K G+ VRA G S Sbjct: 10 AAAAAAAGEGARSPSPAAVSLGLGVAVVSSLVNGSTFVLQKKGI-------VRAKRRGTS 62 Query: 253 YLVEPLWWIGMISMIVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFG 432 YL + +WW G I+M VG+I +LVTP +EKL+ G Sbjct: 63 YLTDIVWWAGTIAMAVGQIGNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILG 122 Query: 433 ILGCVLCVVGSITIALHAPQERDIDSVREVWDLATEPAFLSYATVVVV 576 LGC+L GS+ + +H+P+ + + E+ + T P F+ Y +V++ Sbjct: 123 KLGCLLSCAGSVVLIIHSPKSESVTTQAELEEKLTNPVFVGYLCIVLL 170
>NIPA1_MOUSE (Q8BHK1) Non-imprinted in Prader-Willi/Angelman syndrome region| protein 1 homolog Length = 323 Score = 92.0 bits (227), Expect = 1e-18 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 3/168 (1%) Frame = +1 Query: 82 AAPSSSAGFGGMSTDNAK---GLALAVSSSAFIGASFIVKKMGLRRAADSGVRAGYGGYS 252 AA +++AG G A GL +AV SS G++F+++K G+ VRA G S Sbjct: 4 AAAAAAAGEGARGPSPAAVSLGLGVAVVSSLVNGSTFVLQKKGI-------VRAKRRGTS 56 Query: 253 YLVEPLWWIGMISMIVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFG 432 YL + +WW G I+M VG+I +LVTP +EKL+ G Sbjct: 57 YLTDIVWWAGTIAMAVGQIGNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILG 116 Query: 433 ILGCVLCVVGSITIALHAPQERDIDSVREVWDLATEPAFLSYATVVVV 576 LGC+L GS+ + +H+P+ + + E+ + T P F+ Y +V++ Sbjct: 117 KLGCLLSCAGSVVLIIHSPKSESVTTQAELEEKLTNPVFVGYLCIVLL 164
>YG35_YEAST (P53273) Hypothetical 117.0 kDa protein in ASN2-PHB1 intergenic| region Length = 1036 Score = 35.0 bits (79), Expect = 0.16 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%) Frame = -3 Query: 577 PPLLRSHMK--------EKLAQLQDPKLPLQNQYHAPVEHGVQL*SIRLHKEHNQVYQRC 422 PPL RS+M + L D KLP+ N+ H V HG S LH++ Q+ Sbjct: 43 PPLCRSYMSGFFTGGNSPMINNLSDSKLPISNKQHPKVIHG----SENLHRQTAQLSNEF 98 Query: 421 AVSPVEWN 398 S VE N Sbjct: 99 CSSSVEEN 106
>VE39_NPVOP (Q05121) Early 39 kDa protein (PP31)| Length = 261 Score = 30.8 bits (68), Expect = 3.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 Query: 112 PRTRPKRRAPPSPHERLRLSRASTLPPP 29 P + KRRAPPS +++ R T PPP Sbjct: 220 PVSNKKRRAPPSAPKKIAKQRRDTKPPP 247
>IE63_HHV6U (P52354) Transcriptional regulator IE63 homolog| Length = 515 Score = 30.4 bits (67), Expect = 3.9 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = -1 Query: 402 GMSKCSTDYYTECSKRSDKNSRSKCISSKISYFANNHRNHAYPPKWLH*VRIPSIT 235 G+ + DY+ + + R+ K S + S IS+FA N R P K L R+ +++ Sbjct: 5 GVKRSHHDYHRQTAFRTIKRSTHRQTSKFISHFAKNFRGKLAPLKQLDESRLDALS 60
>NUPL2_XENLA (Q5XGN1) Nucleoporin-like 2| Length = 491 Score = 30.4 bits (67), Expect = 3.9 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +1 Query: 85 APSSSAGFGGMSTDNAKGLALAVSSSAFIGASFIVKKMGLRRAADSGVRAGYGG 246 APS+ +GFG ST + G A +++ F GA+ I A+ + +G+GG Sbjct: 326 APSTISGFG--STASNSGFGAASNAAGFQGAANIAAAPAFGVASSTAPASGFGG 377
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 30.4 bits (67), Expect = 3.9 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = -3 Query: 112 PRTRPKRRAPPSPH--ERLRLSRASTLPP 32 P + P RR PP+PH +R L R LPP Sbjct: 1702 PGSEPPRRPPPAPHDGDRKELPREQPLPP 1730
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 30.4 bits (67), Expect = 3.9 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = -3 Query: 112 PRTRPKRRAPPSPH--ERLRLSRASTLPP 32 P + P RR PP+PH +R L R LPP Sbjct: 1705 PGSEPPRRPPPAPHDGDRKELPREQPLPP 1733
>VAT1_HUMAN (Q99536) Synaptic vesicle membrane protein VAT-1 homolog (EC| 1.-.-.-) Length = 393 Score = 29.6 bits (65), Expect = 6.6 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -2 Query: 158 DDTARARPLALSVDMPPNPAEEEGAAISSRAPTTLACLYTXATG 27 +D + P + P +PA EGAA ++ +P L CL G Sbjct: 14 EDASSPPPKTEAASDPQHPAASEGAAAAAASPPLLRCLVLTGFG 57
>PRG4_MOUSE (Q9JM99) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1054 Score = 29.6 bits (65), Expect = 6.6 Identities = 20/72 (27%), Positives = 28/72 (38%) Frame = -2 Query: 245 PP*PARTPESAARLSPIFLTMKLAPMKALDDTARARPLALSVDMPPNPAEEEGAAISSRA 66 PP P TP S SP T A+P+ + PN + A+++S Sbjct: 232 PPDPPTTPHSKVATSP--------------KTTAAKPVTPKPSLAPNSETSKEASLASNK 277 Query: 65 PTTLACLYTXAT 30 TT+ T AT Sbjct: 278 ETTVETKETTAT 289
>V70K_EPMV (P20129) 70 kDa protein| Length = 649 Score = 25.4 bits (54), Expect(2) = 8.2 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = -2 Query: 179 LAPMKALDDTARARPLALSVDMPPNPAEEEGAAISSRAPTTLA 51 L P D AR ALS+ PP PA+ +S+ P A Sbjct: 241 LGPSPLHIDPARPTTKALSLCTPPRPAKSTSPCNNSQLPKPTA 283 Score = 22.3 bits (46), Expect(2) = 8.2 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -1 Query: 267 WLH*VRIPSITRADAGICGPSEPHL 193 +LH + P AGI GPS H+ Sbjct: 224 FLHPLAFPRFVCDQAGILGPSPLHI 248
>SWF1_SCHPO (O60069) Palmitoyltransferase swf1 (EC 2.3.1.-)| Length = 356 Score = 29.3 bits (64), Expect = 8.6 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +3 Query: 372 YNNQCCTCSFHSTGETAHLWYTWLCSLC-SRIDHNC 476 + N+C TC F + H LC++C + DH+C Sbjct: 156 FPNKCSTCKFEKPARSKH---CRLCNICVEKFDHHC 188
>SHPS1_MOUSE (P97797) Tyrosine-protein phosphatase non-receptor type substrate 1| precursor (SHP substrate 1) (SHPS-1) (Inhibitory receptor SHPS-1) (Signal-regulatory protein alpha-1) (Sirp-alpha-1) (mSIRP-alpha1) (MyD-1 antigen) (Brain Ig-like molecule wi Length = 513 Score = 29.3 bits (64), Expect = 8.6 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -1 Query: 540 LSCKIPNFPYRINITLLWSMECNCDRSDYTKNTTKYTKG 424 L+C+ F Y ++ L+W N R+D KN TK T G Sbjct: 272 LTCRAERF-YPEDLQLIWLENGNVSRNDTPKNLTKNTDG 309
>PLXB2_HUMAN (O15031) Plexin-B2 precursor (MM1)| Length = 1838 Score = 29.3 bits (64), Expect = 8.6 Identities = 15/57 (26%), Positives = 32/57 (56%) Frame = -2 Query: 224 PESAARLSPIFLTMKLAPMKALDDTARARPLALSVDMPPNPAEEEGAAISSRAPTTL 54 P++ +R + + + ++P+ AL + L L + PP+PA EG A+ +P+++ Sbjct: 526 PQNMSRRAQGEVQLTVSPLPALSEEDEL--LCLFGESPPHPARVEGEAVICNSPSSI 580
>ARFJ_ARATH (Q9SKN5) Auxin response factor 10| Length = 693 Score = 29.3 bits (64), Expect = 8.6 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -1 Query: 327 ISSKISYFANNHRNHAYPPKWLH*VRIPSI 238 ++S + YFA H HA+ P H R+P + Sbjct: 25 LNSTVFYFAQGHTEHAHAPPDFHAPRVPPL 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,341,443 Number of Sequences: 219361 Number of extensions: 1413546 Number of successful extensions: 5286 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4953 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5268 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
