ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags31f20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X62724.1|HVRNPL171 H.vulgare mRNA for ribosomal protein L17-1 Length = 785 Score = 749 bits (378), Expect = 0.0 Identities = 390/393 (99%), Gaps = 1/393 (0%) Strand = Plus / Plus Query: 1 gtgttctctcccgcgccgnagcagccatggtgaagtactcgacggnatcccgcgaatccc 60 |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 23 gtgttctctcccgcgccgacgcagccatggtgaagtactcgacgg-atcccgcgaatccc 81 Query: 61 accaagtccgccaaggccatgggccgcgacctgcgtgttcatttcaagaacactagggaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82 accaagtccgccaaggccatgggccgcgacctgcgtgttcatttcaagaacactagggaa 141 Query: 121 acagcgtttgccctgaggaagatgccgctgaacaaggctaagaggtaccttgaggatgtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 142 acagcgtttgccctgaggaagatgccgctgaacaaggctaagaggtaccttgaggatgtg 201 Query: 181 ttggcacacaagcaagccatccccttccggaggtactgccgtggtgttggacgcacggcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 202 ttggcacacaagcaagccatccccttccggaggtactgccgtggtgttggacgcacggcc 261 Query: 241 caggttaagaaccgtcagccaaatggtcagggacgctggcctgccaagtctgctaagttc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 262 caggttaagaaccgtcagccaaatggtcagggacgctggcctgccaagtctgctaagttc 321 Query: 301 gttctggatcttctaaagaacgcagagagcaatgctgaggtgaaaggtcttgatgtggat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 322 gttctggatcttctaaagaacgcagagagcaatgctgaggtgaaaggtcttgatgtggat 381 Query: 361 gctctctacatttcgcacatccaagtgaaccag 393 ||||||||||||||||||||||||||||||||| Sbjct: 382 gctctctacatttcgcacatccaagtgaaccag 414
>gb|AF264022.1| Poa secunda ribosomal protein L17-1 mRNA, complete cds Length = 808 Score = 525 bits (265), Expect = e-146 Identities = 347/373 (93%), Gaps = 1/373 (0%) Strand = Plus / Plus Query: 21 gcagccatggtgaagtactcgacggnatcccgcgaatcccaccaagtccgccaaggccat 80 ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct: 17 gcagccatggtgaagtactcgacgg-atcccgccaatcccaccaagtccgccaaggccat 75 Query: 81 gggccgcgacctgcgtgttcatttcaagaacactagggaaacagcgtttgccctgaggaa 140 |||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 76 gggccgggacctgcgtgttcatttcaagaatactagggaaacagcgttcgccctcaggaa 135 Query: 141 gatgccgctgaacaaggctaagaggtaccttgaggatgtgttggcacacaagcaagccat 200 |||||| ||||||||||||||||||||||| ||||||||| | ||||||||||| ||||| Sbjct: 136 gatgccactgaacaaggctaagaggtacctggaggatgtgcttgcacacaagcaggccat 195 Query: 201 ccccttccggaggtactgccgtggtgttggacgcacggcccaggttaagaaccgtcagcc 260 ||||||||| ||||||||||||||||||||||| || || || | ||||||||| ||||| Sbjct: 196 ccccttccgcaggtactgccgtggtgttggacgtaccgctcaagctaagaaccgccagcc 255 Query: 261 aaatggtcagggacgctggcctgccaagtctgctaagttcgttctggatcttctaaagaa 320 |||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||| Sbjct: 256 aaatggtcagggtcgctggcctgccaagtctgctcagtttgttctggatcttctcaagaa 315 Query: 321 cgcagagagcaatgctgaggtgaaaggtcttgatgtggatgctctctacatttcgcacat 380 |||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||| Sbjct: 316 cgcagagagcaatgctgaggtgaaaggtctggatgttgatgctctctacatctcacacat 375 Query: 381 ccaagtgaaccag 393 ||||||||||||| Sbjct: 376 ccaagtgaaccag 388
>ref|XM_450351.1| Oryza sativa (japonica cultivar-group), mRNA Length = 813 Score = 262 bits (132), Expect = 8e-67 Identities = 264/308 (85%) Strand = Plus / Plus Query: 58 cccaccaagtccgccaaggccatgggccgcgacctgcgtgttcatttcaagaacactagg 117 |||||||||||| |||||||||||||||| ||| ||||||| || ||||||||||| | Sbjct: 109 cccaccaagtcctccaaggccatgggccgggacttgcgtgtgcacttcaagaacacccgt 168 Query: 118 gaaacagcgtttgccctgaggaagatgccgctgaacaaggctaagaggtaccttgaggat 177 || ||||| ||||| | |||||| |||| ||| |||||| |||||||||||||||||| Sbjct: 169 gagacagcttttgctatcaggaagttgcctctgggcaaggccaagaggtaccttgaggat 228 Query: 178 gtgttggcacacaagcaagccatccccttccggaggtactgccgtggtgttggacgcacg 237 ||| | || ||||||||||| ||||||||||| ||||||||| |||||||||| ||||| Sbjct: 229 gtgattgcccacaagcaagctatccccttccgtaggtactgcggtggtgttggccgcact 288 Query: 238 gcccaggttaagaaccgtcagccaaatggtcagggacgctggcctgccaagtctgctaag 297 || || | |||| || || |||| ||||||||||||||||||||||||||||||| Sbjct: 289 gctcaagctaagtcacgccattcaaacggtcagggacgctggcctgccaagtctgctaga 348 Query: 298 ttcgttctggatcttctaaagaacgcagagagcaatgctgaggtgaaaggtcttgatgtg 357 ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 349 ttcattctggatcttcttaagaatgcagagagcaatgctgaggtgaaaggtctggatgtt 408 Query: 358 gatgctct 365 ||| |||| Sbjct: 409 gatactct 416
>ref|XM_507427.1| PREDICTED Oryza sativa (japonica cultivar-group), P0523B07.46 mRNA Length = 914 Score = 262 bits (132), Expect = 8e-67 Identities = 264/308 (85%) Strand = Plus / Plus Query: 58 cccaccaagtccgccaaggccatgggccgcgacctgcgtgttcatttcaagaacactagg 117 |||||||||||| |||||||||||||||| ||| ||||||| || ||||||||||| | Sbjct: 110 cccaccaagtcctccaaggccatgggccgggacttgcgtgtgcacttcaagaacacccgt 169 Query: 118 gaaacagcgtttgccctgaggaagatgccgctgaacaaggctaagaggtaccttgaggat 177 || ||||| ||||| | |||||| |||| ||| |||||| |||||||||||||||||| Sbjct: 170 gagacagcttttgctatcaggaagttgcctctgggcaaggccaagaggtaccttgaggat 229 Query: 178 gtgttggcacacaagcaagccatccccttccggaggtactgccgtggtgttggacgcacg 237 ||| | || ||||||||||| ||||||||||| ||||||||| |||||||||| ||||| Sbjct: 230 gtgattgcccacaagcaagctatccccttccgtaggtactgcggtggtgttggccgcact 289 Query: 238 gcccaggttaagaaccgtcagccaaatggtcagggacgctggcctgccaagtctgctaag 297 || || | |||| || || |||| ||||||||||||||||||||||||||||||| Sbjct: 290 gctcaagctaagtcacgccattcaaacggtcagggacgctggcctgccaagtctgctaga 349 Query: 298 ttcgttctggatcttctaaagaacgcagagagcaatgctgaggtgaaaggtcttgatgtg 357 ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 350 ttcattctggatcttcttaagaatgcagagagcaatgctgaggtgaaaggtctggatgtt 409 Query: 358 gatgctct 365 ||| |||| Sbjct: 410 gatactct 417
>ref|XM_506642.2| PREDICTED Oryza sativa (japonica cultivar-group), P0523B07.46 mRNA Length = 936 Score = 262 bits (132), Expect = 8e-67 Identities = 264/308 (85%) Strand = Plus / Plus Query: 58 cccaccaagtccgccaaggccatgggccgcgacctgcgtgttcatttcaagaacactagg 117 |||||||||||| |||||||||||||||| ||| ||||||| || ||||||||||| | Sbjct: 96 cccaccaagtcctccaaggccatgggccgggacttgcgtgtgcacttcaagaacacccgt 155 Query: 118 gaaacagcgtttgccctgaggaagatgccgctgaacaaggctaagaggtaccttgaggat 177 || ||||| ||||| | |||||| |||| ||| |||||| |||||||||||||||||| Sbjct: 156 gagacagcttttgctatcaggaagttgcctctgggcaaggccaagaggtaccttgaggat 215 Query: 178 gtgttggcacacaagcaagccatccccttccggaggtactgccgtggtgttggacgcacg 237 ||| | || ||||||||||| ||||||||||| ||||||||| |||||||||| ||||| Sbjct: 216 gtgattgcccacaagcaagctatccccttccgtaggtactgcggtggtgttggccgcact 275 Query: 238 gcccaggttaagaaccgtcagccaaatggtcagggacgctggcctgccaagtctgctaag 297 || || | |||| || || |||| ||||||||||||||||||||||||||||||| Sbjct: 276 gctcaagctaagtcacgccattcaaacggtcagggacgctggcctgccaagtctgctaga 335 Query: 298 ttcgttctggatcttctaaagaacgcagagagcaatgctgaggtgaaaggtcttgatgtg 357 ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 336 ttcattctggatcttcttaagaatgcagagagcaatgctgaggtgaaaggtctggatgtt 395 Query: 358 gatgctct 365 ||| |||| Sbjct: 396 gatactct 403
>dbj|AK120273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013048E22, full insert sequence Length = 915 Score = 262 bits (132), Expect = 8e-67 Identities = 264/308 (85%) Strand = Plus / Plus Query: 58 cccaccaagtccgccaaggccatgggccgcgacctgcgtgttcatttcaagaacactagg 117 |||||||||||| |||||||||||||||| ||| ||||||| || ||||||||||| | Sbjct: 110 cccaccaagtcctccaaggccatgggccgggacttgcgtgtgcacttcaagaacacccgt 169 Query: 118 gaaacagcgtttgccctgaggaagatgccgctgaacaaggctaagaggtaccttgaggat 177 || ||||| ||||| | |||||| |||| ||| |||||| |||||||||||||||||| Sbjct: 170 gagacagcttttgctatcaggaagttgcctctgggcaaggccaagaggtaccttgaggat 229 Query: 178 gtgttggcacacaagcaagccatccccttccggaggtactgccgtggtgttggacgcacg 237 ||| | || ||||||||||| ||||||||||| ||||||||| |||||||||| ||||| Sbjct: 230 gtgattgcccacaagcaagctatccccttccgtaggtactgcggtggtgttggccgcact 289 Query: 238 gcccaggttaagaaccgtcagccaaatggtcagggacgctggcctgccaagtctgctaag 297 || || | |||| || || |||| ||||||||||||||||||||||||||||||| Sbjct: 290 gctcaagctaagtcacgccattcaaacggtcagggacgctggcctgccaagtctgctaga 349 Query: 298 ttcgttctggatcttctaaagaacgcagagagcaatgctgaggtgaaaggtcttgatgtg 357 ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 350 ttcattctggatcttcttaagaatgcagagagcaatgctgaggtgaaaggtctggatgtt 409 Query: 358 gatgctct 365 ||| |||| Sbjct: 410 gatactct 417
>dbj|AK105087.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A12, full insert sequence Length = 834 Score = 262 bits (132), Expect = 8e-67 Identities = 264/308 (85%) Strand = Plus / Plus Query: 58 cccaccaagtccgccaaggccatgggccgcgacctgcgtgttcatttcaagaacactagg 117 |||||||||||| |||||||||||||||| ||| ||||||| || ||||||||||| | Sbjct: 130 cccaccaagtcctccaaggccatgggccgggacttgcgtgtgcacttcaagaacacccgt 189 Query: 118 gaaacagcgtttgccctgaggaagatgccgctgaacaaggctaagaggtaccttgaggat 177 || ||||| ||||| | |||||| |||| ||| |||||| |||||||||||||||||| Sbjct: 190 gagacagcttttgctatcaggaagttgcctctgggcaaggccaagaggtaccttgaggat 249 Query: 178 gtgttggcacacaagcaagccatccccttccggaggtactgccgtggtgttggacgcacg 237 ||| | || ||||||||||| ||||||||||| ||||||||| |||||||||| ||||| Sbjct: 250 gtgattgcccacaagcaagctatccccttccgtaggtactgcggtggtgttggccgcact 309 Query: 238 gcccaggttaagaaccgtcagccaaatggtcagggacgctggcctgccaagtctgctaag 297 || || | |||| || || |||| ||||||||||||||||||||||||||||||| Sbjct: 310 gctcaagctaagtcacgccattcaaacggtcagggacgctggcctgccaagtctgctaga 369 Query: 298 ttcgttctggatcttctaaagaacgcagagagcaatgctgaggtgaaaggtcttgatgtg 357 ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 370 ttcattctggatcttcttaagaatgcagagagcaatgctgaggtgaaaggtctggatgtt 429 Query: 358 gatgctct 365 ||| |||| Sbjct: 430 gatactct 437
>dbj|AK072488.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134I03, full insert sequence Length = 936 Score = 262 bits (132), Expect = 8e-67 Identities = 264/308 (85%) Strand = Plus / Plus Query: 58 cccaccaagtccgccaaggccatgggccgcgacctgcgtgttcatttcaagaacactagg 117 |||||||||||| |||||||||||||||| ||| ||||||| || ||||||||||| | Sbjct: 96 cccaccaagtcctccaaggccatgggccgggacttgcgtgtgcacttcaagaacacccgt 155 Query: 118 gaaacagcgtttgccctgaggaagatgccgctgaacaaggctaagaggtaccttgaggat 177 || ||||| ||||| | |||||| |||| ||| |||||| |||||||||||||||||| Sbjct: 156 gagacagcttttgctatcaggaagttgcctctgggcaaggccaagaggtaccttgaggat 215 Query: 178 gtgttggcacacaagcaagccatccccttccggaggtactgccgtggtgttggacgcacg 237 ||| | || ||||||||||| ||||||||||| ||||||||| |||||||||| ||||| Sbjct: 216 gtgattgcccacaagcaagctatccccttccgtaggtactgcggtggtgttggccgcact 275 Query: 238 gcccaggttaagaaccgtcagccaaatggtcagggacgctggcctgccaagtctgctaag 297 || || | |||| || || |||| ||||||||||||||||||||||||||||||| Sbjct: 276 gctcaagctaagtcacgccattcaaacggtcagggacgctggcctgccaagtctgctaga 335 Query: 298 ttcgttctggatcttctaaagaacgcagagagcaatgctgaggtgaaaggtcttgatgtg 357 ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 336 ttcattctggatcttcttaagaatgcagagagcaatgctgaggtgaaaggtctggatgtt 395 Query: 358 gatgctct 365 ||| |||| Sbjct: 396 gatactct 403
>gb|BT017485.1| Zea mays clone EL01N0412G01.c mRNA sequence Length = 640 Score = 256 bits (129), Expect = 5e-65 Identities = 279/329 (84%) Strand = Plus / Plus Query: 58 cccaccaagtccgccaaggccatgggccgcgacctgcgtgttcatttcaagaacactagg 117 ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| | Sbjct: 36 cccaccaagtccgccaaggccatgggccgtgacctacgtgttcacttcaagaacacacgt 95 Query: 118 gaaacagcgtttgccctgaggaagatgccgctgaacaaggctaagaggtaccttgaggat 177 || ||||| |||||||| |||||| || | || | |||||| || || |||||||||||| Sbjct: 96 gagacagcttttgcccttaggaagttgtcactcaccaaggccaaaagttaccttgaggat 155 Query: 178 gtgttggcacacaagcaagccatccccttccggaggtactgccgtggtgttggacgcacg 237 ||| | || |||||||| |||||||| ||||| ||||| || |||||||||| || || Sbjct: 156 gtgatcgcccacaagcaggccatcccgttccgcaggtattgtggtggtgttgggcgtact 215 Query: 238 gcccaggttaagaaccgtcagccaaatggtcagggacgctggcctgccaagtctgctaag 297 || |||| |||| || || ||||||||||||||||||||||||||||||||||||| Sbjct: 216 gctcaggctaagtctcgccactcaaatggtcagggacgctggcctgccaagtctgctaaa 275 Query: 298 ttcgttctggatcttctaaagaacgcagagagcaatgctgaggtgaaaggtcttgatgtg 357 ||| |||| || ||||| ||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 276 ttcattctagaccttctcaagaatgcagagagcaatgctgaggtgaaaggacttgatgtg 335 Query: 358 gatgctctctacatttcgcacatccaagt 386 ||| | ||||| | |||||||| ||||| Sbjct: 336 gataccctctatgtgtcgcacattcaagt 364
>gb|AY109488.1| Zea mays CL9529_1 mRNA sequence Length = 1024 Score = 248 bits (125), Expect = 1e-62 Identities = 278/329 (84%) Strand = Plus / Minus Query: 58 cccaccaagtccgccaaggccatgggccgcgacctgcgtgttcatttcaagaacactagg 117 ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| | Sbjct: 887 cccaccaagtccgccaaggccatgggccgtgacctacgtgttcacttcaagaacacacgt 828 Query: 118 gaaacagcgtttgccctgaggaagatgccgctgaacaaggctaagaggtaccttgaggat 177 || ||||| |||||||| |||||| || | || | |||||| || || |||||||||||| Sbjct: 827 gagacagcttttgcccttaggaagttgtcactcaccaaggccaaaagttaccttgaggat 768 Query: 178 gtgttggcacacaagcaagccatccccttccggaggtactgccgtggtgttggacgcacg 237 ||| | || |||||||| |||||||| ||||| ||||| || | ||||||||||| || Sbjct: 767 gtgatcgcccacaagcaggccatcccgttccgcaggtattgtggcggtgttggacgtact 708 Query: 238 gcccaggttaagaaccgtcagccaaatggtcagggacgctggcctgccaagtctgctaag 297 || |||| |||| || || |||||||||||||||||||||||| |||||||||||| Sbjct: 707 gctcaggctaagtctcgccactcaaatggtcagggacgctggcctgtcaagtctgctaaa 648 Query: 298 ttcgttctggatcttctaaagaacgcagagagcaatgctgaggtgaaaggtcttgatgtg 357 ||| |||| || ||||| ||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 647 ttcattctagaccttctcaagaatgcagagagcaatgctgaggtgaaaggacttgatgtg 588 Query: 358 gatgctctctacatttcgcacatccaagt 386 ||| | ||||| | |||||||| ||||| Sbjct: 587 gataccctctatgtgtcgcacattcaagt 559
>gb|AY103585.1| Zea mays PCO123564 mRNA sequence Length = 1953 Score = 216 bits (109), Expect = 4e-53 Identities = 308/373 (82%), Gaps = 1/373 (0%) Strand = Plus / Minus Query: 21 gcagccatggtgaagtactcgacggnatcccgcgaatcccaccaagtccgccaaggccat 80 |||||||||||||| || ||||||| | || | || ||||||||||| |||||||||| Sbjct: 1735 gcagccatggtgaaatattcgacgg-agccaaccaaccccaccaagtcaaccaaggccat 1677 Query: 81 gggccgcgacctgcgtgttcatttcaagaacactagggaaacagcgtttgccctgaggaa 140 |||||| ||||| |||||||| ||||||||||| | || ||||| |||||||| ||||| Sbjct: 1676 gggccgtgacctacgtgttcacttcaagaacacccgtgagacagcttttgcccttaggaa 1617 Query: 141 gatgccgctgaacaaggctaagaggtaccttgaggatgtgttggcacacaagcaagccat 200 | || | || | |||||| || |||||||||||||||||| | || |||||||| ||||| Sbjct: 1616 gttgtcactcaccaaggccaaaaggtaccttgaggatgtgattgcccacaagcaggccat 1557 Query: 201 ccccttccggaggtactgccgtggtgttggacgcacggcccaggttaagaaccgtcagcc 260 ||| ||||| ||||| || | ||||||||||| || || |||| |||| ||||| | Sbjct: 1556 cccgttccgcaggtattgtggcggtgttggacgtaccgctcaggctaagtctcgtcactc 1497 Query: 261 aaatggtcagggacgctggcctgccaagtctgctaagttcgttctggatcttctaaagaa 320 |||||| |||||||||||||||| ||| ||||||| ||| |||| || ||||| ||||| Sbjct: 1496 aaatgggcagggacgctggcctgtcaaatctgctagattcattctagaccttctcaagaa 1437 Query: 321 cgcagagagcaatgctgaggtgaaaggtcttgatgtggatgctctctacatttcgcacat 380 || ||||||||||||||||| |||||||||||||| ||| | ||||| | || ||||| Sbjct: 1436 tgctgagagcaatgctgaggtaaaaggtcttgatgtcgataccctctatgtgtcacacat 1377 Query: 381 ccaagtgaaccag 393 |||||||||||| Sbjct: 1376 tcaagtgaaccag 1364
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 186 bits (94), Expect = 4e-44 Identities = 178/206 (86%) Strand = Plus / Minus Query: 136 aggaagatgccgctgaacaaggctaagaggtaccttgaggatgtgttggcacacaagcaa 195 |||||| |||| ||| |||||| ||||||||||||||||||||| | || ||||||||| Sbjct: 4337710 aggaagttgcctctgggcaaggccaagaggtaccttgaggatgtgattgcccacaagcaa 4337651 Query: 196 gccatccccttccggaggtactgccgtggtgttggacgcacggcccaggttaagaaccgt 255 || ||||||||||| ||||||||| |||||||||| ||||| || || | |||| || Sbjct: 4337650 gctatccccttccgtaggtactgcggtggtgttggccgcactgctcaagctaagtcacgc 4337591 Query: 256 cagccaaatggtcagggacgctggcctgccaagtctgctaagttcgttctggatcttcta 315 || |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct: 4337590 cattcaaacggtcagggacgctggcctgccaagtctgctagattcattctggatcttctt 4337531 Query: 316 aagaacgcagagagcaatgctgaggt 341 ||||| |||||||||||||||||||| Sbjct: 4337530 aagaatgcagagagcaatgctgaggt 4337505 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Minus Query: 71 ccaaggccatgggccgcgacctgcgtgttcatttcaag 108 |||||||||||||||| ||| ||||||| || |||||| Sbjct: 4339344 ccaaggccatgggccgggacttgcgtgtgcacttcaag 4339307
>dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1279D09 Length = 134793 Score = 186 bits (94), Expect = 4e-44 Identities = 178/206 (86%) Strand = Plus / Minus Query: 136 aggaagatgccgctgaacaaggctaagaggtaccttgaggatgtgttggcacacaagcaa 195 |||||| |||| ||| |||||| ||||||||||||||||||||| | || ||||||||| Sbjct: 40528 aggaagttgcctctgggcaaggccaagaggtaccttgaggatgtgattgcccacaagcaa 40469 Query: 196 gccatccccttccggaggtactgccgtggtgttggacgcacggcccaggttaagaaccgt 255 || ||||||||||| ||||||||| |||||||||| ||||| || || | |||| || Sbjct: 40468 gctatccccttccgtaggtactgcggtggtgttggccgcactgctcaagctaagtcacgc 40409 Query: 256 cagccaaatggtcagggacgctggcctgccaagtctgctaagttcgttctggatcttcta 315 || |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct: 40408 cattcaaacggtcagggacgctggcctgccaagtctgctagattcattctggatcttctt 40349 Query: 316 aagaacgcagagagcaatgctgaggt 341 ||||| |||||||||||||||||||| Sbjct: 40348 aagaatgcagagagcaatgctgaggt 40323 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Minus Query: 71 ccaaggccatgggccgcgacctgcgtgttcatttcaag 108 |||||||||||||||| ||| ||||||| || |||||| Sbjct: 42162 ccaaggccatgggccgggacttgcgtgtgcacttcaag 42125
>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0523B07 Length = 170510 Score = 186 bits (94), Expect = 4e-44 Identities = 178/206 (86%) Strand = Plus / Minus Query: 136 aggaagatgccgctgaacaaggctaagaggtaccttgaggatgtgttggcacacaagcaa 195 |||||| |||| ||| |||||| ||||||||||||||||||||| | || ||||||||| Sbjct: 161469 aggaagttgcctctgggcaaggccaagaggtaccttgaggatgtgattgcccacaagcaa 161410 Query: 196 gccatccccttccggaggtactgccgtggtgttggacgcacggcccaggttaagaaccgt 255 || ||||||||||| ||||||||| |||||||||| ||||| || || | |||| || Sbjct: 161409 gctatccccttccgtaggtactgcggtggtgttggccgcactgctcaagctaagtcacgc 161350 Query: 256 cagccaaatggtcagggacgctggcctgccaagtctgctaagttcgttctggatcttcta 315 || |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct: 161349 cattcaaacggtcagggacgctggcctgccaagtctgctagattcattctggatcttctt 161290 Query: 316 aagaacgcagagagcaatgctgaggt 341 ||||| |||||||||||||||||||| Sbjct: 161289 aagaatgcagagagcaatgctgaggt 161264 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Minus Query: 71 ccaaggccatgggccgcgacctgcgtgttcatttcaag 108 |||||||||||||||| ||| ||||||| || |||||| Sbjct: 163103 ccaaggccatgggccgggacttgcgtgtgcacttcaag 163066
>ref|NM_105410.2| Arabidopsis thaliana structural constituent of ribosome AT1G67430 mRNA, complete cds Length = 713 Score = 127 bits (64), Expect = 3e-26 Identities = 115/132 (87%) Strand = Plus / Plus Query: 262 aatggtcagggacgctggcctgccaagtctgctaagttcgttctggatcttctaaagaac 321 |||||||| ||||| ||||| |||||||||||| |||| ||||| ||| | || |||||| Sbjct: 267 aatggtcaaggacgttggccagccaagtctgctcagtttgttcttgatttgctcaagaac 326 Query: 322 gcagagagcaatgctgaggtgaaaggtcttgatgtggatgctctctacatttcgcacatc 381 || |||||||||||||||||||||||| | ||||| ||||| |||| ||| || |||||| Sbjct: 327 gctgagagcaatgctgaggtgaaaggtttggatgttgatgccctcttcatatcacacatc 386 Query: 382 caagtgaaccag 393 |||||||||||| Sbjct: 387 caagtgaaccag 398 Score = 69.9 bits (35), Expect = 6e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 97 gttcatttcaagaacactagggaaacagcgtttgccctgaggaagatgccgctgaacaag 156 ||||| |||||||| ||||||||||||||| || | |||||| | || ||| |||| Sbjct: 102 gttcacttcaagaatactagggaaacagcgcacgcaatcaggaagctaccattgatcaag 161 Query: 157 gctaagaggtaccttgaggatgtgttggcacacaagcaagccatccccttc 207 || ||||||||||||||||||||| | || ||||||||||| || |||||| Sbjct: 162 gcgaagaggtaccttgaggatgtgatagctcacaagcaagcaattcccttc 212
>emb|X62725.1|HVRNPL172 H.vulgare mRNA for ribosomal protein L17-2 Length = 854 Score = 127 bits (64), Expect = 3e-26 Identities = 196/240 (81%) Strand = Plus / Plus Query: 153 caaggctaagaggtaccttgaggatgtgttggcacacaagcaagccatccccttccggag 212 ||||||||||||||||||||||||||| | || ||||||||||| || |||||||| || Sbjct: 168 caaggctaagaggtaccttgaggatgttctcgctcacaagcaagcaattcccttccgtag 227 Query: 213 gtactgccgtggtgttggacgcacggcccaggttaagaaccgtcagccaaatggtcaggg 272 |||||| | ||||| || || || || || || |||||||| ||||||||||| ||||| Sbjct: 228 atactgcagaggtgtgggccgtactgcacaagtaaagaaccgccagccaaatgggcaggg 287 Query: 273 acgctggcctgccaagtctgctaagttcgttctggatcttctaaagaacgcagagagcaa 332 ||||||||||| ||||| || ||||||| |||||| | || ||||| || ||||| || Sbjct: 288 tcgctggcctgcaaagtcggcccagttcgtgctggatttgctgaagaatgctgagagtaa 347 Query: 333 tgctgaggtgaaaggtcttgatgtggatgctctctacatttcgcacatccaagtgaacca 392 ||||| || ||||| | ||||| || ||||||||||| |||||||| |||||||| Sbjct: 348 cgctgaagttaaaggcttggatgtcgacaacctctacatttcacacatccaggtgaacca 407
>gb|AY081524.1| Arabidopsis thaliana unknown protein mRNA, complete cds Length = 564 Score = 127 bits (64), Expect = 3e-26 Identities = 115/132 (87%) Strand = Plus / Plus Query: 262 aatggtcagggacgctggcctgccaagtctgctaagttcgttctggatcttctaaagaac 321 |||||||| ||||| ||||| |||||||||||| |||| ||||| ||| | || |||||| Sbjct: 235 aatggtcaaggacgttggccagccaagtctgctcagtttgttcttgatttgctcaagaac 294 Query: 322 gcagagagcaatgctgaggtgaaaggtcttgatgtggatgctctctacatttcgcacatc 381 || |||||||||||||||||||||||| | ||||| ||||| |||| ||| || |||||| Sbjct: 295 gctgagagcaatgctgaggtgaaaggtttggatgttgatgccctcttcatatcacacatc 354 Query: 382 caagtgaaccag 393 |||||||||||| Sbjct: 355 caagtgaaccag 366 Score = 69.9 bits (35), Expect = 6e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 97 gttcatttcaagaacactagggaaacagcgtttgccctgaggaagatgccgctgaacaag 156 ||||| |||||||| ||||||||||||||| || | |||||| | || ||| |||| Sbjct: 70 gttcacttcaagaatactagggaaacagcgcacgcaatcaggaagctaccattgatcaag 129 Query: 157 gctaagaggtaccttgaggatgtgttggcacacaagcaagccatccccttc 207 || ||||||||||||||||||||| | || ||||||||||| || |||||| Sbjct: 130 gcgaagaggtaccttgaggatgtgatagctcacaagcaagcaattcccttc 180
>gb|AY042862.1| Arabidopsis thaliana ribosomal protein L17-like protein (T1F15.11) mRNA, complete cds Length = 711 Score = 127 bits (64), Expect = 3e-26 Identities = 115/132 (87%) Strand = Plus / Plus Query: 262 aatggtcagggacgctggcctgccaagtctgctaagttcgttctggatcttctaaagaac 321 |||||||| ||||| ||||| |||||||||||| |||| ||||| ||| | || |||||| Sbjct: 267 aatggtcaaggacgttggccagccaagtctgctcagtttgttcttgatttgctcaagaac 326 Query: 322 gcagagagcaatgctgaggtgaaaggtcttgatgtggatgctctctacatttcgcacatc 381 || |||||||||||||||||||||||| | ||||| ||||| |||| ||| || |||||| Sbjct: 327 gctgagagcaatgctgaggtgaaaggtttggatgttgatgccctcttcatatcacacatc 386 Query: 382 caagtgaaccag 393 |||||||||||| Sbjct: 387 caagtgaaccag 398 Score = 69.9 bits (35), Expect = 6e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 97 gttcatttcaagaacactagggaaacagcgtttgccctgaggaagatgccgctgaacaag 156 ||||| |||||||| ||||||||||||||| || | |||||| | || ||| |||| Sbjct: 102 gttcacttcaagaatactagggaaacagcgcacgcaatcaggaagctaccattgatcaag 161 Query: 157 gctaagaggtaccttgaggatgtgttggcacacaagcaagccatccccttc 207 || ||||||||||||||||||||| | || ||||||||||| || |||||| Sbjct: 162 gcgaagaggtaccttgaggatgtgatagctcacaagcaagcaattcccttc 212
>emb|BX817777.1|CNS0AE81 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL40ZG06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 680 Score = 119 bits (60), Expect = 7e-24 Identities = 114/132 (86%) Strand = Plus / Plus Query: 262 aatggtcagggacgctggcctgccaagtctgctaagttcgttctggatcttctaaagaac 321 |||||||| ||||| ||||| |||||||||||| |||| ||||| ||| | || |||||| Sbjct: 255 aatggtcaaggacgttggccagccaagtctgctcagtttgttcttgatttgctcaagaac 314 Query: 322 gcagagagcaatgctgaggtgaaaggtcttgatgtggatgctctctacatttcgcacatc 381 || |||||||||||||||||||||||| | ||||| ||||| |||| ||| || |||||| Sbjct: 315 gctgagagcaatgctgaggtgaaaggtttggatgttgatgccctcttcatatcacacatc 374 Query: 382 caagtgaaccag 393 ||||| |||||| Sbjct: 375 caagttaaccag 386 Score = 61.9 bits (31), Expect = 1e-06 Identities = 91/111 (81%) Strand = Plus / Plus Query: 97 gttcatttcaagaacactagggaaacagcgtttgccctgaggaagatgccgctgaacaag 156 ||||| |||||||| ||||||||||||||| || | |||||| | || ||| |||| Sbjct: 90 gttcacttcaagaatactagggaaacagcgcacgcaatcaggaagctaccattgatcaag 149 Query: 157 gctaagaggtaccttgaggatgtgttggcacacaagcaagccatccccttc 207 || |||||||||||||||||||| | || ||||||||||| || |||||| Sbjct: 150 gcgaagaggtaccttgaggatgttatagctcacaagcaagcaattcccttc 200
>ref|NM_102503.2| Arabidopsis thaliana structural constituent of ribosome AT1G27400 mRNA, complete cds Length = 826 Score = 115 bits (58), Expect = 1e-22 Identities = 232/290 (80%) Strand = Plus / Plus Query: 103 ttcaagaacactagggaaacagcgtttgccctgaggaagatgccgctgaacaaggctaag 162 |||||||||||||| ||||||||| ||| | |||||| | || |||||||||| || Sbjct: 171 ttcaagaacactagagaaacagcgcacgccataaggaagctaccattgaacaaggccaaa 230 Query: 163 aggtaccttgaggatgtgttggcacacaagcaagccatccccttccggaggtactgccgt 222 |||||| | || ||||| | || ||||||||||| ||||||||| | | ||| ||| Sbjct: 231 aggtacttggaagatgtcatagctcacaagcaagctatccccttcacccgtttctgtcgt 290 Query: 223 ggtgttggacgcacggcccaggttaagaaccgtcagccaaatggtcagggacgctggcct 282 |||||||| || || || |||| |||||| | || | || || || || ||||||||| Sbjct: 291 ggtgttggtcgtaccgctcaggcaaagaacaggcattcgaacggacaaggtcgctggcct 350 Query: 283 gccaagtctgctaagttcgttctggatcttctaaagaacgcagagagcaatgctgaggtg 342 || || |||||| | |||||||| |||||||| ||||| || ||||||||||||||||| Sbjct: 351 gctaaatctgctcaattcgttcttgatcttctcaagaatgctgagagcaatgctgaggtc 410 Query: 343 aaaggtcttgatgtggatgctctctacatttcgcacatccaagtgaacca 392 |||||| | ||||| ||||| || | |||||| ||||||||||||||||| Sbjct: 411 aaaggtttggatgtcgatgcccttttcatttctcacatccaagtgaacca 460
>gb|AY077651.1| Arabidopsis thaliana At1g27400/F17L21_20 mRNA, complete cds Length = 531 Score = 115 bits (58), Expect = 1e-22 Identities = 232/290 (80%) Strand = Plus / Plus Query: 103 ttcaagaacactagggaaacagcgtttgccctgaggaagatgccgctgaacaaggctaag 162 |||||||||||||| ||||||||| ||| | |||||| | || |||||||||| || Sbjct: 76 ttcaagaacactagagaaacagcgcacgccataaggaagctaccattgaacaaggccaaa 135 Query: 163 aggtaccttgaggatgtgttggcacacaagcaagccatccccttccggaggtactgccgt 222 |||||| | || ||||| | || ||||||||||| ||||||||| | | ||| ||| Sbjct: 136 aggtacttggaagatgtcatagctcacaagcaagctatccccttcacccgtttctgtcgt 195 Query: 223 ggtgttggacgcacggcccaggttaagaaccgtcagccaaatggtcagggacgctggcct 282 |||||||| || || || |||| |||||| | || | || || || || ||||||||| Sbjct: 196 ggtgttggtcgtaccgctcaggcaaagaacaggcattcgaacggacaaggtcgctggcct 255 Query: 283 gccaagtctgctaagttcgttctggatcttctaaagaacgcagagagcaatgctgaggtg 342 || || |||||| | |||||||| |||||||| ||||| || ||||||||||||||||| Sbjct: 256 gctaaatctgctcaattcgttcttgatcttctcaagaatgctgagagcaatgctgaggtc 315 Query: 343 aaaggtcttgatgtggatgctctctacatttcgcacatccaagtgaacca 392 |||||| | ||||| ||||| || | |||||| ||||||||||||||||| Sbjct: 316 aaaggtttggatgtcgatgcccttttcatttctcacatccaagtgaacca 365
>gb|AF428449.1|AF428449 Arabidopsis thaliana At1g27400/F17L21_20 mRNA, complete cds Length = 712 Score = 115 bits (58), Expect = 1e-22 Identities = 232/290 (80%) Strand = Plus / Plus Query: 103 ttcaagaacactagggaaacagcgtttgccctgaggaagatgccgctgaacaaggctaag 162 |||||||||||||| ||||||||| ||| | |||||| | || |||||||||| || Sbjct: 111 ttcaagaacactagagaaacagcgcacgccataaggaagctaccattgaacaaggccaaa 170 Query: 163 aggtaccttgaggatgtgttggcacacaagcaagccatccccttccggaggtactgccgt 222 |||||| | || ||||| | || ||||||||||| ||||||||| | | ||| ||| Sbjct: 171 aggtacttggaagatgtcatagctcacaagcaagctatccccttcacccgtttctgtcgt 230 Query: 223 ggtgttggacgcacggcccaggttaagaaccgtcagccaaatggtcagggacgctggcct 282 |||||||| || || || |||| |||||| | || | || || || || ||||||||| Sbjct: 231 ggtgttggtcgtaccgctcaggcaaagaacaggcattcgaacggacaaggtcgctggcct 290 Query: 283 gccaagtctgctaagttcgttctggatcttctaaagaacgcagagagcaatgctgaggtg 342 || || |||||| | |||||||| |||||||| ||||| || ||||||||||||||||| Sbjct: 291 gctaaatctgctcaattcgttcttgatcttctcaagaatgctgagagcaatgctgaggtc 350 Query: 343 aaaggtcttgatgtggatgctctctacatttcgcacatccaagtgaacca 392 |||||| | ||||| ||||| || | |||||| ||||||||||||||||| Sbjct: 351 aaaggtttggatgtcgatgcccttttcatttctcacatccaagtgaacca 400
>gb|AF428271.1|AF428271 Arabidopsis thaliana At1g27400/F17L21_20 mRNA, complete cds Length = 762 Score = 115 bits (58), Expect = 1e-22 Identities = 232/290 (80%) Strand = Plus / Plus Query: 103 ttcaagaacactagggaaacagcgtttgccctgaggaagatgccgctgaacaaggctaag 162 |||||||||||||| ||||||||| ||| | |||||| | || |||||||||| || Sbjct: 111 ttcaagaacactagagaaacagcgcacgccataaggaagctaccattgaacaaggccaaa 170 Query: 163 aggtaccttgaggatgtgttggcacacaagcaagccatccccttccggaggtactgccgt 222 |||||| | || ||||| | || ||||||||||| ||||||||| | | ||| ||| Sbjct: 171 aggtacttggaagatgtcatagctcacaagcaagctatccccttcacccgtttctgtcgt 230 Query: 223 ggtgttggacgcacggcccaggttaagaaccgtcagccaaatggtcagggacgctggcct 282 |||||||| || || || |||| |||||| | || | || || || || ||||||||| Sbjct: 231 ggtgttggtcgtaccgctcaggcaaagaacaggcattcgaacggacaaggtcgctggcct 290 Query: 283 gccaagtctgctaagttcgttctggatcttctaaagaacgcagagagcaatgctgaggtg 342 || || |||||| | |||||||| |||||||| ||||| || ||||||||||||||||| Sbjct: 291 gctaaatctgctcaattcgttcttgatcttctcaagaatgctgagagcaatgctgaggtc 350 Query: 343 aaaggtcttgatgtggatgctctctacatttcgcacatccaagtgaacca 392 |||||| | ||||| ||||| || | |||||| ||||||||||||||||| Sbjct: 351 aaaggtttggatgtcgatgcccttttcatttctcacatccaagtgaacca 400
>gb|AY037249.1| Arabidopsis thaliana At1g27400/F17L21_20 mRNA, complete cds Length = 767 Score = 115 bits (58), Expect = 1e-22 Identities = 232/290 (80%) Strand = Plus / Plus Query: 103 ttcaagaacactagggaaacagcgtttgccctgaggaagatgccgctgaacaaggctaag 162 |||||||||||||| ||||||||| ||| | |||||| | || |||||||||| || Sbjct: 111 ttcaagaacactagagaaacagcgcacgccataaggaagctaccattgaacaaggccaaa 170 Query: 163 aggtaccttgaggatgtgttggcacacaagcaagccatccccttccggaggtactgccgt 222 |||||| | || ||||| | || ||||||||||| ||||||||| | | ||| ||| Sbjct: 171 aggtacttggaagatgtcatagctcacaagcaagctatccccttcacccgtttctgtcgt 230 Query: 223 ggtgttggacgcacggcccaggttaagaaccgtcagccaaatggtcagggacgctggcct 282 |||||||| || || || |||| |||||| | || | || || || || ||||||||| Sbjct: 231 ggtgttggtcgtaccgctcaggcaaagaacaggcattcgaacggacaaggtcgctggcct 290 Query: 283 gccaagtctgctaagttcgttctggatcttctaaagaacgcagagagcaatgctgaggtg 342 || || |||||| | |||||||| |||||||| ||||| || ||||||||||||||||| Sbjct: 291 gctaaatctgctcaattcgttcttgatcttctcaagaatgctgagagcaatgctgaggtc 350 Query: 343 aaaggtcttgatgtggatgctctctacatttcgcacatccaagtgaacca 392 |||||| | ||||| ||||| || | |||||| ||||||||||||||||| Sbjct: 351 aaaggtttggatgtcgatgcccttttcatttctcacatccaagtgaacca 400
>gb|AY088522.1| Arabidopsis thaliana clone 749 mRNA, complete sequence Length = 747 Score = 115 bits (58), Expect = 1e-22 Identities = 232/290 (80%) Strand = Plus / Plus Query: 103 ttcaagaacactagggaaacagcgtttgccctgaggaagatgccgctgaacaaggctaag 162 |||||||||||||| ||||||||| ||| | |||||| | || |||||||||| || Sbjct: 171 ttcaagaacactagagaaacagcgcacgccataaggaagctaccattgaacaaggccaaa 230 Query: 163 aggtaccttgaggatgtgttggcacacaagcaagccatccccttccggaggtactgccgt 222 |||||| | || ||||| | || ||||||||||| ||||||||| | | ||| ||| Sbjct: 231 aggtacttggaagatgtcatagctcacaagcaagctatccccttcacccgtttctgtcgt 290 Query: 223 ggtgttggacgcacggcccaggttaagaaccgtcagccaaatggtcagggacgctggcct 282 |||||||| || || || |||| |||||| | || | || || || || ||||||||| Sbjct: 291 ggtgttggtcgtaccgctcaggcaaagaacaggcattcgaacggacaaggtcgctggcct 350 Query: 283 gccaagtctgctaagttcgttctggatcttctaaagaacgcagagagcaatgctgaggtg 342 || || |||||| | |||||||| |||||||| ||||| || ||||||||||||||||| Sbjct: 351 gctaaatctgctcaattcgttcttgatcttctcaagaatgctgagagcaatgctgaggtc 410 Query: 343 aaaggtcttgatgtggatgctctctacatttcgcacatccaagtgaacca 392 |||||| | ||||| ||||| || | |||||| ||||||||||||||||| Sbjct: 411 aaaggtttggatgtcgatgcccttttcatttctcacatccaagtgaacca 460
>gb|AF076975.1|AF076975 Populus alba unknown mRNA, partial cds Length = 578 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 277 tggcctgccaagtctgctaagttcgttctggatcttctaaagaacgcagagagcaatgct 336 ||||||||||||||||| |||||| | |||||| | || ||||| || |||||||||||| Sbjct: 130 tggcctgccaagtctgccaagttcatcctggatttactcaagaatgccgagagcaatgct 189 Query: 337 gaggtgaaaggtcttgatgtggatgctctctacatttcgcacatccaagtgaa 389 ||||| || ||| | ||||||||||| ||||||||||| |||||||| ||||| Sbjct: 190 gaggtcaagggtttggatgtggatgcactctacatttctcacatccaggtgaa 242
>gb|AC004393.2|T1F15 Arabidopsis thaliana chromosome 1 BAC T1F15 sequence, complete sequence Length = 60066 Score = 83.8 bits (42), Expect = 4e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 262 aatggtcagggacgctggcctgccaagtctgctaagttcgttctggatcttctaaagaac 321 |||||||| ||||| ||||| |||||||||||| |||| ||||| ||| | || |||||| Sbjct: 44320 aatggtcaaggacgttggccagccaagtctgctcagtttgttcttgatttgctcaagaac 44261 Query: 322 gcagagagcaatgctgaggtga 343 || ||||||||||||||||||| Sbjct: 44260 gctgagagcaatgctgaggtga 44239 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 153 caaggctaagaggtaccttgaggatgtgttggcacacaagcaagccatccccttc 207 |||||| ||||||||||||||||||||| | || ||||||||||| || |||||| Sbjct: 44429 caaggcgaagaggtaccttgaggatgtgatagctcacaagcaagcaattcccttc 44375 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 338 aggtgaaaggtcttgatgtggatgctctctacatttcgcacatccaagtgaaccag 393 ||||||||||| | ||||| ||||| |||| ||| || |||||||||||||||||| Sbjct: 44152 aggtgaaaggtttggatgttgatgccctcttcatatcacacatccaagtgaaccag 44097
>gb|AF034948.1|AF034948 Zea mays ribosomal protein L17 (rpl17) mRNA, complete cds Length = 746 Score = 79.8 bits (40), Expect = 6e-12 Identities = 142/176 (80%) Strand = Plus / Plus Query: 61 accaagtccgccaaggccatgggccgcgacctgcgtgttcatttcaagaacactagggaa 120 ||||| || |||||||||||||| | |||||| | || || ||||||||||| ||||| Sbjct: 74 accaaatcggccaaggccatgggaagggacctgagggtccacttcaagaacacaagggag 133 Query: 121 acagcgtttgccctgaggaagatgccgctgaacaaggctaagaggtaccttgaggatgtg 180 ||||| ||||| || | ||| |||| ||| |||||||||| | |||||||||||||| Sbjct: 134 acagcttttgcgcttcgcaagctgcctttgaccaaggctaagcgataccttgaggatgtt 193 Query: 181 ttggcacacaagcaagccatccccttccggaggtactgccgtggtgttggacgcac 236 | || |||||||| || || ||||||||||| ||||| | |||||||| ||||| Sbjct: 194 attgctcacaagcaggcaattcccttccggagatactgtggaggtgttggtcgcac 249
>gb|AC004557.2|AC004557 Genomic sequence for Arabidopsis thaliana BAC F17L21 from chromosome I, complete sequence Length = 99690 Score = 71.9 bits (36), Expect = 1e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 274 cgctggcctgccaagtctgctaagttcgttctggatcttctaaagaacgcagagagcaat 333 ||||||||||| || |||||| | |||||||| |||||||| ||||| || ||||||||| Sbjct: 60054 cgctggcctgctaaatctgctcaattcgttcttgatcttctcaagaatgctgagagcaat 60113 Query: 334 gctgaggt 341 |||||||| Sbjct: 60114 gctgaggt 60121 Score = 46.1 bits (23), Expect = 0.085 Identities = 47/55 (85%) Strand = Plus / Plus Query: 338 aggtgaaaggtcttgatgtggatgctctctacatttcgcacatccaagtgaacca 392 |||| |||||| | ||||| ||||| || | |||||| ||||||||||||||||| Sbjct: 60202 aggtcaaaggtttggatgtcgatgcccttttcatttctcacatccaagtgaacca 60256
>emb|AJ876806.1| Acanthamoeba polyphaga mRNA for putative ribosomal L17-like protein Length = 545 Score = 63.9 bits (32), Expect = 4e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 316 aagaacgcagagagcaatgctgaggtgaaaggtcttgatgtggatgctctctacatttcg 375 |||||||| |||||||| |||||||| || |||||||||||||| || |||||| ||||| Sbjct: 272 aagaacgccgagagcaacgctgaggtcaagggtcttgatgtggacgccctctacgtttcg 331 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 87 cgacctgcgtgttcatttcaagaacactaggga 119 |||||| |||||||| ||||||||||| ||||| Sbjct: 43 cgacctccgtgttcacttcaagaacaccaggga 75
>gb|DQ235197.1| Solanum tuberosum clone 168G07 ribosomal protein PETRP-like mRNA, complete cds Length = 774 Score = 60.0 bits (30), Expect = 6e-06 Identities = 198/254 (77%) Strand = Plus / Plus Query: 136 aggaagatgccgctgaacaaggctaagaggtaccttgaggatgtgttggcacacaagcaa 195 |||||||||||| || ||||||| ||||| || || |||||||| | || ||||| ||| Sbjct: 144 aggaagatgccgttggacaaggccaagagatatctagaggatgttcttgcccacaaacaa 203 Query: 196 gccatccccttccggaggtactgccgtggtgttggacgcacggcccaggttaagaaccgt 255 ||||| |||||| | | |||||||| ||||| ||||| || |||| ||||| || Sbjct: 204 gccattcccttcactcgcttttgccgtggggttggtcgcactgctcaggcaaagaatcgc 263 Query: 256 cagccaaatggtcagggacgctggcctgccaagtctgctaagttcgttctggatcttcta 315 || |||| ||||| ||||| ||||||| ||| || || ||| |||| ||| | || Sbjct: 264 cattcaaacggtcaaggacgttggcctgtcaaatcagcagggtttattctagatttactc 323 Query: 316 aagaacgcagagagcaatgctgaggtgaaaggtcttgatgtggatgctctctacatttcg 375 || || || || ||||||||||||||||||||| | ||||||||| | || || || || Sbjct: 324 aaaaatgctgaaagcaatgctgaggtgaaaggtttggatgtggattcactttatatatct 383 Query: 376 cacatccaagtgaa 389 |||||||||||||| Sbjct: 384 cacatccaagtgaa 397
>gb|AY496096.1| Capsicum annuum ribosomal protein PETRP mRNA, complete cds Length = 765 Score = 60.0 bits (30), Expect = 6e-06 Identities = 108/134 (80%) Strand = Plus / Plus Query: 260 caaatggtcagggacgctggcctgccaagtctgctaagttcgttctggatcttctaaaga 319 |||||||||| ||||| ||||||| ||| ||||| ||| |||||||| | || || | Sbjct: 277 caaatggtcaaggacgttggcctgtcaaatctgcagggtttattctggatttactcaaaa 336 Query: 320 acgcagagagcaatgctgaggtgaaaggtcttgatgtggatgctctctacatttcgcaca 379 | || ||||||||||||||||| ||||| | ||||||||| | || | ||| || |||| Sbjct: 337 atgctgagagcaatgctgaggttaaaggcttggatgtggattcacttttcatatctcaca 396 Query: 380 tccaagtgaaccag 393 ||||||| |||||| Sbjct: 397 tccaagtaaaccag 410
>gb|DQ207869.1| Solanum tuberosum clone 086A10 ribosomal protein PETRP-like mRNA, complete cds Length = 729 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 325 gagagcaatgctgaggtgaaaggtcttgatgtggatgctctctacatttcgcacatccaa 384 |||||||| ||||||||||||||| | ||||||||| | || || || || ||||||||| Sbjct: 328 gagagcaacgctgaggtgaaaggtttggatgtggattcactttatatatctcacatccaa 387 Query: 385 gtgaa 389 ||||| Sbjct: 388 gtgaa 392
>gb|DQ252494.1| Solanum tuberosum clone 063E12 ribosomal protein PETRP-like mRNA, complete cds Length = 760 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 325 gagagcaatgctgaggtgaaaggtcttgatgtggatgctctctacatttcgcacatccaa 384 |||||||| ||||||||||||||| | ||||||||| | || || || || ||||||||| Sbjct: 339 gagagcaacgctgaggtgaaaggtttggatgtggattcactttatatatctcacatccaa 398 Query: 385 gtgaa 389 ||||| Sbjct: 399 gtgaa 403
>gb|AF307336.1|AF307336 Petunia x hybrida ribosomal protein (PETRP) mRNA, complete cds Length = 819 Score = 56.0 bits (28), Expect = 9e-05 Identities = 85/104 (81%) Strand = Plus / Plus Query: 97 gttcatttcaagaacactagggaaacagcgtttgccctgaggaagatgccgctgaacaag 156 |||||||||||||| ||||| || |||||| |||||| ||||||||||| || |||| Sbjct: 101 gttcatttcaagaatactagagagacagcgcatgcccttaggaagatgcctttgggcaag 160 Query: 157 gctaagaggtaccttgaggatgtgttggcacacaagcaagccat 200 || ||||| ||| | |||||||| | || ||||| |||||||| Sbjct: 161 gcaaagagatacttggaggatgttcttgcccacaaacaagccat 204
>gb|AY310814.1| Nicotiana benthamiana clone 12-173 unknown mRNA Length = 202 Score = 54.0 bits (27), Expect = 3e-04 Identities = 102/127 (80%) Strand = Plus / Plus Query: 263 atggtcagggacgctggcctgccaagtctgctaagttcgttctggatcttctaaagaacg 322 ||||||| | ||||||||||| ||| ||||| || | |||| ||| | || ||||| | Sbjct: 28 atggtcaagaacgctggcctgtcaaatctgcaaaaattattcttgatttactcaagaatg 87 Query: 323 cagagagcaatgctgaggtgaaaggtcttgatgtggatgctctctacatttcgcacatcc 382 | ||||||||||||||||| ||||| | ||||||||| | || | ||| || ||||||| Sbjct: 88 ctgagagcaatgctgaggttaaaggcttggatgtggattcacttttcatatctcacatcc 147 Query: 383 aagtgaa 389 ||||||| Sbjct: 148 aagtgaa 154
>ref|XM_483472.1| Oryza sativa (japonica cultivar-group), mRNA Length = 755 Score = 52.0 bits (26), Expect = 0.001 Identities = 125/158 (79%) Strand = Plus / Plus Query: 61 accaagtccgccaaggccatgggccgcgacctgcgtgttcatttcaagaacactagggaa 120 |||||||| |||||||||||||| | || || | || || ||||||||||| ||||| Sbjct: 103 accaagtcggccaaggccatggggagggatctcagggtccacttcaagaacacaagggag 162 Query: 121 acagcgtttgccctgaggaagatgccgctgaacaaggctaagaggtaccttgaggatgtg 180 |||||||| || || | ||| |||| || |||||| ||| |||||||||||||||| Sbjct: 163 acagcgttcgctcttcgcaagctgcctttggtcaaggcaaagcggtaccttgaggatgtt 222 Query: 181 ttggcacacaagcaagccatccccttccggaggtactg 218 | || |||||||| || || |||||| | |||||||| Sbjct: 223 attgctcacaagcaggcaattcccttcagaaggtactg 260
>gb|AY130354.1| Branchiostoma lanceolatum ribosomal protein L17 mRNA, partial cds Length = 472 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 316 aagaacgcagagagcaatgctgaggtgaaaggtcttgatgtggatgctct 365 ||||||||||||||||||||||| | || ||||| ||||||||| |||| Sbjct: 260 aagaacgcagagagcaatgctgaattcaagggtctggatgtggattctct 309
>dbj|AK120448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100M19, full insert sequence Length = 839 Score = 52.0 bits (26), Expect = 0.001 Identities = 125/158 (79%) Strand = Plus / Plus Query: 61 accaagtccgccaaggccatgggccgcgacctgcgtgttcatttcaagaacactagggaa 120 |||||||| |||||||||||||| | || || | || || ||||||||||| ||||| Sbjct: 160 accaagtcggccaaggccatggggagggatctcagggtccacttcaagaacacaagggag 219 Query: 121 acagcgtttgccctgaggaagatgccgctgaacaaggctaagaggtaccttgaggatgtg 180 |||||||| || || | ||| |||| || |||||| ||| |||||||||||||||| Sbjct: 220 acagcgttcgctcttcgcaagctgcctttggtcaaggcaaagcggtaccttgaggatgtt 279 Query: 181 ttggcacacaagcaagccatccccttccggaggtactg 218 | || |||||||| || || |||||| | |||||||| Sbjct: 280 attgctcacaagcaggcaattcccttcagaaggtactg 317
>dbj|AK062052.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B07, full insert sequence Length = 755 Score = 52.0 bits (26), Expect = 0.001 Identities = 125/158 (79%) Strand = Plus / Plus Query: 61 accaagtccgccaaggccatgggccgcgacctgcgtgttcatttcaagaacactagggaa 120 |||||||| |||||||||||||| | || || | || || ||||||||||| ||||| Sbjct: 103 accaagtcggccaaggccatggggagggatctcagggtccacttcaagaacacaagggag 162 Query: 121 acagcgtttgccctgaggaagatgccgctgaacaaggctaagaggtaccttgaggatgtg 180 |||||||| || || | ||| |||| || |||||| ||| |||||||||||||||| Sbjct: 163 acagcgttcgctcttcgcaagctgcctttggtcaaggcaaagcggtaccttgaggatgtt 222 Query: 181 ttggcacacaagcaagccatccccttccggaggtactg 218 | || |||||||| || || |||||| | |||||||| Sbjct: 223 attgctcacaagcaggcaattcccttcagaaggtactg 260
>ref|XM_424454.1| PREDICTED: Gallus gallus similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI) (LOC426845), mRNA Length = 726 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 322 gcagagagcaatgctgaggtgaaaggtcttgatgtggatgctct 365 |||||||||||||||||| | || ||||| ||||||||| |||| Sbjct: 413 gcagagagcaatgctgagctcaagggtctcgatgtggattctct 456
>ref|XM_427732.1| PREDICTED: Gallus gallus similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI) (LOC430175), partial mRNA Length = 530 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 322 gcagagagcaatgctgaggtgaaaggtcttgatgtggatgctct 365 |||||||||||||||||| | || ||||| ||||||||| |||| Sbjct: 76 gcagagagcaatgctgagcttaagggtctcgatgtggattctct 119
>gb|AY389962.1| Gallus gallus ribosomal protein L17 mRNA, partial cds Length = 472 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 322 gcagagagcaatgctgaggtgaaaggtcttgatgtggatgctct 365 |||||||||||||||||| | || ||||| ||||||||| |||| Sbjct: 266 gcagagagcaatgctgagctcaagggtctcgatgtggattctct 309
>ref|NM_205014.1| Gallus gallus T-cell leukemia homeobox 3 (TLX3), mRNA Length = 1603 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 322 gcagagagcaatgctgaggtgaaaggtcttgatgtggatgctct 365 |||||||||||||||||| | || ||||| ||||||||| |||| Sbjct: 1276 gcagagagcaatgctgagctcaagggtctcgatgtggattctct 1319
>emb|CR352619.1| Gallus gallus finished cDNA, clone ChEST14e6 Length = 715 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 322 gcagagagcaatgctgaggtgaaaggtcttgatgtggatgctct 365 |||||||||||||||||| | || ||||| ||||||||| |||| Sbjct: 409 gcagagagcaatgctgagcttaagggtctcgatgtggattctct 452
>gb|AY130351.1| Scyliorhinus canicula ribosomal protein L17 mRNA, partial cds Length = 472 Score = 48.1 bits (24), Expect = 0.022 Identities = 42/48 (87%) Strand = Plus / Plus Query: 313 ctaaagaacgcagagagcaatgctgaggtgaaaggtcttgatgtggat 360 |||||||||||||| ||||||||||| | || ||||| ||||||||| Sbjct: 257 ctaaagaacgcagaaagcaatgctgaactcaagggtctggatgtggat 304
>gb|AF401571.1| Ictalurus punctatus ribosomal protein L17 mRNA, complete cds Length = 600 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 316 aagaacgcagagagcaatgctgaggtgaaaggtcttgatgtgga 359 ||||||||||||||||||||||| |||| ||| | |||||||| Sbjct: 302 aagaacgcagagagcaatgctgaactgaagggtttggatgtgga 345
>gb|AF071875.1|AF071875 Gallus gallus homeodomain protein (Tlx-3) mRNA, complete cds Length = 1603 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 322 gcagagagcaatgctgaggtgaaaggtcttgatgtggatgctct 365 |||||||||||||||||| | || ||||| ||||||||| |||| Sbjct: 1276 gcagagagcaatgctgagctcaagggtctcgatgtggattctct 1319
>gb|AY853172.1| Pectinaria gouldii ribosomal protein L17 mRNA, complete cds Length = 666 Score = 44.1 bits (22), Expect = 0.34 Identities = 28/30 (93%) Strand = Plus / Plus Query: 310 cttctaaagaacgcagagagcaatgctgag 339 ||||| |||||||| ||||||||||||||| Sbjct: 308 cttctgaagaacgctgagagcaatgctgag 337
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.34 Identities = 55/66 (83%) Strand = Plus / Minus Query: 153 caaggctaagaggtaccttgaggatgtgttggcacacaagcaagccatccccttccggag 212 |||||| ||| |||||||||||||||| | || |||||||| || || |||||| | || Sbjct: 26399844 caaggcaaagcggtaccttgaggatgttattgctcacaagcaggcaattcccttcagaag 26399785 Query: 213 gtactg 218 |||||| Sbjct: 26399784 gtactg 26399779
>dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1789_C07 Length = 138944 Score = 44.1 bits (22), Expect = 0.34 Identities = 55/66 (83%) Strand = Plus / Minus Query: 153 caaggctaagaggtaccttgaggatgtgttggcacacaagcaagccatccccttccggag 212 |||||| ||| |||||||||||||||| | || |||||||| || || |||||| | || Sbjct: 49396 caaggcaaagcggtaccttgaggatgttattgctcacaagcaggcaattcccttcagaag 49337 Query: 213 gtactg 218 |||||| Sbjct: 49336 gtactg 49331
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H02 Length = 170648 Score = 44.1 bits (22), Expect = 0.34 Identities = 55/66 (83%) Strand = Plus / Minus Query: 153 caaggctaagaggtaccttgaggatgtgttggcacacaagcaagccatccccttccggag 212 |||||| ||| |||||||||||||||| | || |||||||| || || |||||| | || Sbjct: 129425 caaggcaaagcggtaccttgaggatgttattgctcacaagcaggcaattcccttcagaag 129366 Query: 213 gtactg 218 |||||| Sbjct: 129365 gtactg 129360
>gb|AY833083.1| Taeniopygia guttata ribosomal protein L17 mRNA, complete cds Length = 633 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 acctgcgtgttcatttcaagaacac 113 |||||||||| |||||||||||||| Sbjct: 79 acctgcgtgtgcatttcaagaacac 103
>gb|DQ214552.1| Taeniopygia guttata clone 0058P0043B12 ribosomal protein L17 variant 2-like mRNA, complete sequence Length = 753 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 acctgcgtgttcatttcaagaacac 113 |||||||||| |||||||||||||| Sbjct: 201 acctgcgtgtgcatttcaagaacac 225
>gb|DQ214551.1| Taeniopygia guttata clone 0058P0013B11 ribosomal protein L17 variant 1-like mRNA, complete sequence Length = 651 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 acctgcgtgttcatttcaagaacac 113 |||||||||| |||||||||||||| Sbjct: 100 acctgcgtgtgcatttcaagaacac 124
>emb|AL392172.9| Human DNA sequence from clone RP11-452F19 on chromosome 1 Contains the 5' end of the gene for a novel protein (FLJ12806), the gene for a novel protein (FLJ32421), two novel genes, the 5' end of two variants of the DISP1 gene for dispatched homolog 1 (Drosophila) and a CpG island, complete sequence Length = 195849 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 aggtgaaaggtcttgatgtgg 358 ||||||||||||||||||||| Sbjct: 167528 aggtgaaaggtcttgatgtgg 167508
>dbj|AK171782.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830010M10 product:unclassifiable, full insert sequence Length = 6121 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 gttctggatcttctaaagaac 321 ||||||||||||||||||||| Sbjct: 5282 gttctggatcttctaaagaac 5302
>gb|AF220552.1|AF220552 Paralichthys olivaceus ribosomal protein L17 mRNA, complete cds Length = 601 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 319 aacgcagagagcaatgctgaggtgaaaggtcttgatgtgga 359 |||||||||||||| |||||| | || ||||| |||||||| Sbjct: 301 aacgcagagagcaacgctgagctcaagggtctggatgtgga 341
>emb|AL603829.5| Mouse DNA sequence from clone RP23-416G21 on chromosome 11, complete sequence Length = 226220 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 301 gttctggatcttctaaagaac 321 ||||||||||||||||||||| Sbjct: 23820 gttctggatcttctaaagaac 23800
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ggccatgggccgcgacctgc 94 |||||||||||||||||||| Sbjct: 1926622 ggccatgggccgcgacctgc 1926603
>gb|AY389929.1| Latimeria chalumnae ribosomal protein L17 mRNA, partial cds Length = 472 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 aagaacgcagagagcaatgctgag 339 ||||| |||||||||||||||||| Sbjct: 260 aagaatgcagagagcaatgctgag 283
>gb|BC055097.1| Danio rerio zgc:65996, mRNA (cDNA clone MGC:65996 IMAGE:6792826), complete cds Length = 636 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 aagaacgcagagagcaatgctgag 339 ||||||||||| |||||||||||| Sbjct: 294 aagaacgcagaaagcaatgctgag 317
>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome Length = 2650701 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 gccgcgacctgcgtgttcat 102 |||||||||||||||||||| Sbjct: 540362 gccgcgacctgcgtgttcat 540343
>gb|AC122528.3| Mus musculus BAC clone RP24-506F15 from chromosome 9, complete sequence Length = 142071 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tccgccaaggccatgggccg 86 |||||||||||||||||||| Sbjct: 42807 tccgccaaggccatgggccg 42826
>ref|NM_007783.2| Mus musculus c-src tyrosine kinase (Csk), mRNA Length = 2292 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tccgccaaggccatgggccg 86 |||||||||||||||||||| Sbjct: 1610 tccgccaaggccatgggccg 1629
>gb|AY278946.1| Branchiostoma belcheri tsingtaunese ribosomal protein L17 mRNA, complete cds Length = 683 Score = 40.1 bits (20), Expect = 5.3 Identities = 38/44 (86%) Strand = Plus / Plus Query: 316 aagaacgcagagagcaatgctgaggtgaaaggtcttgatgtgga 359 ||||| ||||||||||||||||| | || ||||| |||||||| Sbjct: 324 aagaatgcagagagcaatgctgaattcaagggtctggatgtgga 367
>gb|BC049299.1| Danio rerio cDNA clone IMAGE:5914772, **** WARNING: chimeric clone **** Length = 1854 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 aagaacgcagagagcaatgctgag 339 ||||||||||| |||||||||||| Sbjct: 1538 aagaacgcagaaagcaatgctgag 1561
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 aggccatgggccgcgacctg 93 |||||||||||||||||||| Sbjct: 92950 aggccatgggccgcgacctg 92931
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 aggccatgggccgcgacctg 93 |||||||||||||||||||| Sbjct: 271208 aggccatgggccgcgacctg 271189
>dbj|AK137297.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530099L19 product:c-src tyrosine kinase, full insert sequence Length = 2163 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tccgccaaggccatgggccg 86 |||||||||||||||||||| Sbjct: 1497 tccgccaaggccatgggccg 1516
>dbj|AK136876.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330161F16 product:c-src tyrosine kinase, full insert sequence Length = 2752 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tccgccaaggccatgggccg 86 |||||||||||||||||||| Sbjct: 2084 tccgccaaggccatgggccg 2103
>dbj|AK156058.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830006C15 product:c-src tyrosine kinase, full insert sequence Length = 2027 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tccgccaaggccatgggccg 86 |||||||||||||||||||| Sbjct: 1635 tccgccaaggccatgggccg 1654
>ref|XM_680042.1| PREDICTED: Danio rerio similar to Ribosomal protein L17 (LOC572750), mRNA Length = 631 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 aagaacgcagagagcaatgctgag 339 ||||||||||| |||||||||||| Sbjct: 328 aagaacgcagaaagcaatgctgag 351
>dbj|AK170815.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630201N11 product:c-src tyrosine kinase, full insert sequence Length = 2316 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tccgccaaggccatgggccg 86 |||||||||||||||||||| Sbjct: 1651 tccgccaaggccatgggccg 1670
>gb|BC052006.1| Mus musculus c-src tyrosine kinase, mRNA (cDNA clone MGC:62329 IMAGE:5685297), complete cds Length = 2363 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tccgccaaggccatgggccg 86 |||||||||||||||||||| Sbjct: 1668 tccgccaaggccatgggccg 1687
>dbj|AK013057.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810409K13 product:c-src tyrosine kinase, full insert sequence Length = 1323 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tccgccaaggccatgggccg 86 |||||||||||||||||||| Sbjct: 659 tccgccaaggccatgggccg 678
>gb|BC095962.1| Mus musculus c-src tyrosine kinase, mRNA (cDNA clone IMAGE:5400767), with apparent retained intron Length = 2489 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tccgccaaggccatgggccg 86 |||||||||||||||||||| Sbjct: 1991 tccgccaaggccatgggccg 2010
>ref|NM_212760.1| Danio rerio zgc:65996 (zgc:65996), mRNA Length = 636 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 aagaacgcagagagcaatgctgag 339 ||||||||||| |||||||||||| Sbjct: 294 aagaacgcagaaagcaatgctgag 317
>gb|AC092155.3| Homo sapiens BAC clone RP11-312H10 from 2, complete sequence Length = 153304 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 tgttcatttcaagaacacta 115 |||||||||||||||||||| Sbjct: 20731 tgttcatttcaagaacacta 20750
>emb|BX000991.8| Zebrafish DNA sequence from clone CH211-203L7 in linkage group 6, complete sequence Length = 170966 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 aagaacgcagagagcaatgctgag 339 ||||||||||| |||||||||||| Sbjct: 122255 aagaacgcagaaagcaatgctgag 122232
>gb|BC018394.1| Mus musculus c-src tyrosine kinase, mRNA (cDNA clone MGC:25873 IMAGE:4206879), complete cds Length = 2292 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tccgccaaggccatgggccg 86 |||||||||||||||||||| Sbjct: 1610 tccgccaaggccatgggccg 1629
>gb|AC122515.5| Mus musculus BAC clone RP24-455N18 from 9, complete sequence Length = 164271 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tccgccaaggccatgggccg 86 |||||||||||||||||||| Sbjct: 155407 tccgccaaggccatgggccg 155426
>emb|BX005111.4| Zebrafish DNA sequence from clone CH211-273E17 in linkage group 21, complete sequence Length = 169747 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 aagaacgcagagagcaatgctgag 339 ||||||||||| |||||||||||| Sbjct: 5782 aagaacgcagaaagcaatgctgag 5759 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,471,221 Number of Sequences: 3902068 Number of extensions: 2471221 Number of successful extensions: 41565 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41321 Number of HSP's gapped (non-prelim): 233 length of query: 393 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 371 effective length of database: 17,147,199,772 effective search space: 6361611115412 effective search space used: 6361611115412 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
