ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags31f17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLAP_MOUSE (P27612) Phospholipase A-2-activating protein (PLAP) 30 1.4
2PLAP_RAT (P54319) Phospholipase A-2-activating protein (PLAP) 30 1.4
3PLAP_HUMAN (Q9Y263) Phospholipase A-2-activating protein (PLAP) ... 30 1.4
4MTBS_BPSPR (P00476) Modification methylase SPRI (EC 2.1.1.37) (C... 30 1.8
5TPS2_MOUSE (O88856) Protein-tyrosine sulfotransferase 2 (EC 2.8.... 29 3.1
6HCN3_HUMAN (Q9P1Z3) Potassium/sodium hyperpolarization-activated... 28 4.1
7HCN3_RAT (Q9JKA8) Potassium/sodium hyperpolarization-activated c... 28 4.1
8TPS2_HUMAN (O60704) Protein-tyrosine sulfotransferase 2 (EC 2.8.... 28 4.1
9HCN3_MOUSE (O88705) Potassium/sodium hyperpolarization-activated... 28 4.1
10MINC_PASMU (P57845) Probable septum site-determining protein minC 28 4.1
11RM35_HUMAN (Q9NZE8) 39S ribosomal protein L35, mitochondrial pre... 28 5.3
12CBL10_ARATH (Q9LJU0) COBRA-like protein 10 precursor 28 6.9
13DMRT1_MOUSE (Q9QZ59) Doublesex- and mab-3-related transcription ... 27 9.0
14YKJ2_CAEEL (P34276) Hypothetical protein C02D5.2 27 9.0

>PLAP_MOUSE (P27612) Phospholipase A-2-activating protein (PLAP)|
          Length = 646

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 161 FLPHLLFLLGPTFAWSCDL*SLRLFCNCRI*QSI*AFLXKGRRPILSGKIHL 316
           F  HL+ LL P    +  L +LR FCNC + Q+    +   R  ++S  I L
Sbjct: 581 FSSHLINLLNPKGKPANQLLALRTFCNCFVSQAGQKLMMSQRESLMSHAIEL 632



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>PLAP_RAT (P54319) Phospholipase A-2-activating protein (PLAP)|
          Length = 647

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 161 FLPHLLFLLGPTFAWSCDL*SLRLFCNCRI*QSI*AFLXKGRRPILSGKIHL 316
           F  HL+ LL P    +  L +LR FCNC + Q+    +   R  ++S  I L
Sbjct: 582 FSSHLINLLNPKGKPANQLLALRTFCNCFVSQAGQKLMMSQRESLMSHAIEL 633



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>PLAP_HUMAN (Q9Y263) Phospholipase A-2-activating protein (PLAP) (PLA2P)|
          Length = 738

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 161 FLPHLLFLLGPTFAWSCDL*SLRLFCNCRI*QSI*AFLXKGRRPILSGKIHL 316
           F  HL+ LL P    +  L +LR FCNC + Q+    +   R  ++S  I L
Sbjct: 582 FSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIEL 633



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>MTBS_BPSPR (P00476) Modification methylase SPRI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase SPRI) (M.SPRI)
          Length = 439

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -1

Query: 391 FTFKWPIRTATELXIKAQLE*YXPTQVYFPT*DRSSSLXQEGSNTLLNSAVT 236
           F F+W  ++A    +K  LE Y   + Y+   D+++SL +E S + LN  +T
Sbjct: 203 FNFRWTAQSAATKRLKDLLEEYV-DEKYYLNEDKTNSLIKELSTSRLNENLT 253



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>TPS2_MOUSE (O88856) Protein-tyrosine sulfotransferase 2 (EC 2.8.2.20)|
           (Tyrosylprotein sulfotransferase-2) (TPST-2)
          Length = 376

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = +1

Query: 40  LLSCPVGLTFHFLSEVQREVRILIRAVRTRALSKWFPTGSIPTTFVVSSWANICMVL 210
           L+  P G++   LS+++R    +I+ V   ALSKW  TG IP   VV   A I  +L
Sbjct: 269 LIGKPGGVS---LSKIERSTDQVIKPVNLEALSKW--TGHIPRD-VVRDMAQIAPML 319



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>HCN3_HUMAN (Q9P1Z3) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3
          Length = 774

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +1

Query: 4   WAQVHVSLAPLFLLSCPVGLTFHFLSEVQREVRILIRAVRTRALSKWFPT---GSIPTTF 174
           W   +V     FLL   +      + E   E+ +  RA+RTR L  WF      SIP  +
Sbjct: 126 WIVFNVLSDTFFLLDLVLNFRTGIVVEEGAEILLAPRAIRTRYLRTWFLVDLISSIPVDY 185

Query: 175 V 177
           +
Sbjct: 186 I 186



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>HCN3_RAT (Q9JKA8) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3
          Length = 780

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +1

Query: 4   WAQVHVSLAPLFLLSCPVGLTFHFLSEVQREVRILIRAVRTRALSKWFPT---GSIPTTF 174
           W   +V     FLL   +      + E   E+ +  RA+RTR L  WF      SIP  +
Sbjct: 125 WIVFNVLSDTFFLLDLVLNFRTGIVVEEGAEILLAPRAIRTRYLRTWFLVDLISSIPVDY 184

Query: 175 V 177
           +
Sbjct: 185 I 185



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>TPS2_HUMAN (O60704) Protein-tyrosine sulfotransferase 2 (EC 2.8.2.20)|
           (Tyrosylprotein sulfotransferase-2) (TPST-2)
          Length = 377

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = +1

Query: 40  LLSCPVGLTFHFLSEVQREVRILIRAVRTRALSKWFPTGSIPTTFVVSSWANICMVL 210
           L+  P G++   LS+++R    +I+ V   ALSKW  TG IP   VV   A I  +L
Sbjct: 270 LIGKPGGVS---LSKIERSTDQVIKPVNLEALSKW--TGHIPGD-VVRDMAQIAPML 320



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>HCN3_MOUSE (O88705) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3 (Hyperpolarization-activated
           cation channel 3) (HAC-3)
          Length = 779

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +1

Query: 4   WAQVHVSLAPLFLLSCPVGLTFHFLSEVQREVRILIRAVRTRALSKWFPT---GSIPTTF 174
           W   +V     FLL   +      + E   E+ +  RA+RTR L  WF      SIP  +
Sbjct: 125 WIVFNVLSDTFFLLDLVLNFRTGIVVEEGAEILLAPRAIRTRYLRTWFLVDLISSIPVDY 184

Query: 175 V 177
           +
Sbjct: 185 I 185



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>MINC_PASMU (P57845) Probable septum site-determining protein minC|
          Length = 225

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/92 (18%), Positives = 44/92 (47%)
 Frame = -3

Query: 374 HQNSYRTXHQSSTRIVSXNTSVFSHLR*VVVPSTRRLKYFAKFCSYRITSMIIGRKTMQM 195
           H +S     ++ ++ +  + S+F H+  V++  T  L+              +  + ++ 
Sbjct: 21  HSSSLSVIKRALSKKIKSSPSIFQHIA-VILQFTPELEK-------------VNLQALKS 66

Query: 194 LAQEETTNVVGMLPVGNHLERALVRTALIRIL 99
           L +E   +++G+    NHL++ L+ T+ + +L
Sbjct: 67  LCEEFNIHIIGVSDWTNHLQKELIMTSGLALL 98



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>RM35_HUMAN (Q9NZE8) 39S ribosomal protein L35, mitochondrial precursor (L35mt)|
           (MRP-L35)
          Length = 170

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/53 (32%), Positives = 31/53 (58%)
 Frame = -3

Query: 368 NSYRTXHQSSTRIVSXNTSVFSHLR*VVVPSTRRLKYFAKFCSYRITSMIIGR 210
           ++YR   ++++ I + +T  FSH++  VV ST RL    +  +   TS+I+ R
Sbjct: 26  STYRNCVKNASLISALSTGRFSHIQTPVVSSTPRLTTSERNLTCGHTSVILNR 78



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>CBL10_ARATH (Q9LJU0) COBRA-like protein 10 precursor|
          Length = 672

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 148 PTGSIPTTFVVSSWANICMVLRP 216
           P+G +  T+ +SSW  +C + +P
Sbjct: 404 PSGLLAVTYAISSWQVVCNITKP 426



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>DMRT1_MOUSE (Q9QZ59) Doublesex- and mab-3-related transcription factor 1|
          Length = 374

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 150 YREHSYHICCFFLGQHLHGLATYNH*GYSVTAEFSKVFEPSCXRDDDL 293
           YR HSY+    +LGQ +  + T+   G S +   + VF P   +D  L
Sbjct: 286 YRMHSYYGPPSYLGQSMSQIFTFEE-GPSYSEAKASVFSPPSSQDSGL 332



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>YKJ2_CAEEL (P34276) Hypothetical protein C02D5.2|
          Length = 323

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 214 PIIIEVIL*LQNLAKYLSLLVEGTTTYLKWENTLVL 321
           P+I   IL   +L    + L+ G ++Y+ W  T++L
Sbjct: 12  PLICRPILTFSSLHILTAFLISGNSSYINWSVTIIL 47


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,396,853
Number of Sequences: 219361
Number of extensions: 953044
Number of successful extensions: 2021
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2021
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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