ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags31f17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC119832.9| Mus musculus chromosome 3, clone RP23-471I16, com... 44 0.34
2gb|AC140199.2| Mus musculus BAC clone RP23-480D7 from chromosome... 40 5.3
3gb|AC149876.2| Xenopus tropicalis clone CH216-166O21, complete s... 40 5.3
4gb|AC133653.4| Mus musculus BAC clone RP24-320J12 from chromosom... 40 5.3
5emb|AL121754.18|HSDJ629F1 Human DNA sequence from clone RP4-629F... 40 5.3
6gb|AC158781.4| Mus musculus chromosome 7, clone RP23-264H19, com... 40 5.3
7gb|AC015933.9| Homo sapiens chromosome 18, clone CTD-2023G8, com... 40 5.3
8emb|BX571730.9| Zebrafish DNA sequence from clone DKEY-35I22 in ... 40 5.3
9emb|AL845349.13| Mouse DNA sequence from clone RP23-311F6 on chr... 40 5.3
10emb|AJ437104.1|GSP437104 Glomus arbuscular mycorrhizal symbiont ... 40 5.3
11emb|CR762277.2| Xenopus tropicalis finished cDNA, clone TGas038a06 40 5.3
12gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromo... 40 5.3

>gb|AC119832.9| Mus musculus chromosome 3, clone RP23-471I16, complete sequence
          Length = 178681

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 56    ttggtcttacatttcatttttt 77
             ||||||||||||||||||||||
Sbjct: 59555 ttggtcttacatttcatttttt 59534



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>gb|AC140199.2| Mus musculus BAC clone RP23-480D7 from chromosome 9, complete sequence
          Length = 170896

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 56    ttggtcttacatttcattttttgt 79
             ||||||||||||||||||| ||||
Sbjct: 85855 ttggtcttacatttcatttgttgt 85878



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>gb|AC149876.2| Xenopus tropicalis clone CH216-166O21, complete sequence
          Length = 185995

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 353    tagttctgtagctgttctga 372
              ||||||||||||||||||||
Sbjct: 106101 tagttctgtagctgttctga 106082



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>gb|AC133653.4| Mus musculus BAC clone RP24-320J12 from chromosome 7, complete sequence
          Length = 144233

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   catttgttgtttcttcttgg 189
             ||||||||||||||||||||
Sbjct: 66224 catttgttgtttcttcttgg 66205



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>emb|AL121754.18|HSDJ629F1 Human DNA sequence from clone RP4-629F1 on chromosome 20 Contains the
             5' end of the C20orf13 gene for chromsome 20 open reading
             frame 13 and a CpG island, complete sequence
          Length = 170509

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ctgcagaatttagcaaagta 260
             ||||||||||||||||||||
Sbjct: 26296 ctgcagaatttagcaaagta 26277



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>gb|AC158781.4| Mus musculus chromosome 7, clone RP23-264H19, complete sequence
          Length = 208419

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    catttgttgtttcttcttgg 189
              ||||||||||||||||||||
Sbjct: 109014 catttgttgtttcttcttgg 108995



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>gb|AC015933.9| Homo sapiens chromosome 18, clone CTD-2023G8, complete sequence
          Length = 249021

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     ttacatttcattttttgtct 81
              ||||||||||||||||||||
Sbjct: 127622 ttacatttcattttttgtct 127603



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>emb|BX571730.9| Zebrafish DNA sequence from clone DKEY-35I22 in linkage group 5, complete
              sequence
          Length = 160875

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 56     ttggtcttacatttcattttttgt 79
              ||||||||||| ||||||||||||
Sbjct: 135428 ttggtcttacacttcattttttgt 135451



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>emb|AL845349.13| Mouse DNA sequence from clone RP23-311F6 on chromosome 2, complete
             sequence
          Length = 180824

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tttgttgtttcttcttgggc 191
             ||||||||||||||||||||
Sbjct: 61235 tttgttgtttcttcttgggc 61254



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>emb|AJ437104.1|GSP437104 Glomus arbuscular mycorrhizal symbiont of Voyriella parviflora 18S
           rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene
           (partial) and ITS1 and 2, clone 57-2, Voyriella
           parviflora sample M
          Length = 486

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 202 atggtcttgcgacctataatcatt 225
           |||||||| |||||||||||||||
Sbjct: 449 atggtcttacgacctataatcatt 472



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>emb|CR762277.2| Xenopus tropicalis finished cDNA, clone TGas038a06
          Length = 1763

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 239 aactgcagaatttagcaaag 258
           ||||||||||||||||||||
Sbjct: 904 aactgcagaatttagcaaag 923



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>gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromosome unknown, complete
             sequence
          Length = 173896

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    ttacatttcattttttgtct 81
             ||||||||||||||||||||
Sbjct: 53631 ttacatttcattttttgtct 53612


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,852,900
Number of Sequences: 3902068
Number of extensions: 3852900
Number of successful extensions: 72744
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72722
Number of HSP's gapped (non-prelim): 22
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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