>AMOT_HUMAN (Q4VCS5) Angiomotin|
          Length = 1084

 Score = 36.6 bits (83), Expect = 0.070
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 294 HMVAAHTPSQPPCSSDEHKGQHHMLHSPGIQTQHYPRLQQHEENHH 157
           H      P Q    +  H+G H+ L  PG+  Q   + QQH  +HH
Sbjct: 345 HSAHLPRPQQHFLPNQAHQGDHYRLSQPGLSQQQQQQQQQHHHHHH 390

>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor|
          Length = 351

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = -3

Query: 312 DEHYHGHMVAAHTPSQPPCSSDEHKGQHHMLHSPGIQTQHYPRLQQHEENHH 157
           +EH+H H    H     P     H G HH  H       H      HEE+HH
Sbjct: 91  EEHHHHHPHPHHHHHHHPPHHHHHLGHHHHHH-------HAAHHHHHEEHHH 135



 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/54 (27%), Positives = 19/54 (35%)
 Frame = -3

Query: 318 YPDEHYHGHMVAAHTPSQPPCSSDEHKGQHHMLHSPGIQTQHYPRLQQHEENHH 157
           +P+EH+  H    H     P     H   HH  H       H+     H E HH
Sbjct: 81  HPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHHHHLGHHHHHHHAAHHHHHEEHH 134



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 15/54 (27%), Positives = 18/54 (33%)
 Frame = -3

Query: 318 YPDEHYHGHMVAAHTPSQPPCSSDEHKGQHHMLHSPGIQTQHYPRLQQHEENHH 157
           +P  H+H H    H           H   HH  H       H      HEE+HH
Sbjct: 97  HPHPHHHHHHHPPHHHHHLGHHHHHHHAAHHHHHEEHHHHHHAAHHHHHEEHHH 150



 Score = 31.2 bits (69), Expect = 2.9
 Identities = 15/52 (28%), Positives = 19/52 (36%)
 Frame = -3

Query: 312 DEHYHGHMVAAHTPSQPPCSSDEHKGQHHMLHSPGIQTQHYPRLQQHEENHH 157
           +EH+H H    H P             HH  H P     H+  L  H  +HH
Sbjct: 75  EEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHP---PHHHHHLGHHHHHHH 123



 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/54 (25%), Positives = 19/54 (35%)
 Frame = -3

Query: 318 YPDEHYHGHMVAAHTPSQPPCSSDEHKGQHHMLHSPGIQTQHYPRLQQHEENHH 157
           +P+EH+  H    H           H+  HH    P     H+P    H   HH
Sbjct: 65  HPEEHHEPHHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHHHHLGHH 118

>CCG8_NEUCR (Q01306) Clock-controlled protein 8|
          Length = 661

 Score = 33.1 bits (74), Expect = 0.77
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 306 HYHGHMVAAHTPSQPPCSSDEHKGQHHMLH-SPGIQTQHY--PRLQQHEENHH 157
           H+H HM   H+PS     S +H+ Q H  +  P    QHY  P+ QQ  ++HH
Sbjct: 5   HHHRHM---HSPS-----SQQHEHQQHQQYQQPPQHHQHYEAPQHQQQHQHHH 49

>NUOL_ECOLI (P33607) NADH-quinone oxidoreductase chain L (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain L) (NDH-1, chain L) (NUO12)
          Length = 613

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +1

Query: 409 GMFDLCYSVTGYDFY-NSKFCFSDEVWKWMR----NLYIQMVLSASRLTMLLCLTPSVFL 573
           G+  L  +  G DF+ N +  +S  +W WM     N+   +VL    LTML  +T   FL
Sbjct: 39  GLAALVTAFIGVDFFANGEQTYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFL 98

Query: 574 IALQST 591
           I + ++
Sbjct: 99  IHMYAS 104

>SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 395

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
 Frame = -3

Query: 318 YPDEHYHGHMVAAHTPSQPPCSSDEHKGQHHMLHSPGIQTQ----HYPRLQQHEENHHLV 151
           + D H+H      H   Q      +H+ Q H  H    Q Q    H  + QQ  ++HH  
Sbjct: 249 FHDHHHHQQQQQFHDHQQQQQQFHDHQQQQHQFHDHPQQKQQFHDHPQQQQQFHDHHHQQ 308

Query: 150 AWKSDF 133
             K  F
Sbjct: 309 QQKQQF 314

>HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor|
           (Histidine-proline-rich glycoprotein) (HPRG)
          Length = 525

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 25/84 (29%), Positives = 29/84 (34%)
 Frame = -3

Query: 312 DEHYHGHMVAAHTPSQPPCSSDEHKGQHHMLHSPGIQTQHYPRLQQHEENHHLVAWKSDF 133
           ++H HGH   AH P +         G H   H P     H+P    H   HH      DF
Sbjct: 358 EQHPHGHHPHAHHPHEHDTHRQHPHGHHPHGHHP---HGHHPH-GHHPHGHH--PHCHDF 411

Query: 132 DQQNVCIPHGY*MCPPATNQLHHC 61
                C        PP  NQ H C
Sbjct: 412 QDYGPC-------DPPPHNQGHCC 428

>LE756_CAEEL (Q11184) Protein let-756 (Lethal protein 756)|
          Length = 425

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 264 PPCSSDEHKGQHHMLHSPGIQTQHYPRLQQHEENHHLVAWKSDFDQQNV 118
           P   +  H   HH  H P + +   P+ +   + H+L    S+ ++QNV
Sbjct: 371 PVTQAPHHNSHHHHHHHPRVSSSSDPQQRHQSQQHYLAQTVSNPNRQNV 419

>DLX4A_BRARE (Q98879) Homeobox protein Dlx4a (DLX-8) (Distal-less homeobox|
           protein 4a)
          Length = 250

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -3

Query: 282 AHTPSQPPCSSDEHKGQHHMLHSPGIQTQHYPRLQQHEENH 160
           A  PS+       H  Q H  HSPG+   HYP    H+  H
Sbjct: 12  ASDPSKSAFLEFSHGYQSHQQHSPGVSHAHYPVHGLHQGAH 52

>OTX1_RAT (Q63410) Homeobox protein OTX1|
          Length = 355

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
 Frame = -3

Query: 372 QGKQAATSS*RGRYVCGLY---PDEHYHGHMVAAHTPSQPPCSSDEHKGQHHMLHSPGIQ 202
           QG  A +SS  G   C  Y      H+H H ++   PS        H   HH L      
Sbjct: 233 QGYPAPSSSYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGH 292

Query: 201 TQHYPRLQQHEENHH 157
             H+     H  +HH
Sbjct: 293 HHHH-----HHHHHH 302

>OTX1_MOUSE (P80205) Homeobox protein OTX1|
          Length = 355

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
 Frame = -3

Query: 372 QGKQAATSS*RGRYVCGLY---PDEHYHGHMVAAHTPSQPPCSSDEHKGQHHMLHSPGIQ 202
           QG  A +SS  G   C  Y      H+H H ++   PS        H   HH L      
Sbjct: 233 QGYPAPSSSYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGH 292

Query: 201 TQHYPRLQQHEENHH 157
             H+     H  +HH
Sbjct: 293 HHHH-----HHHHHH 302

>ZEN_DROSU (Q24648) Protein zerknuellt|
          Length = 373

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
 Frame = -3

Query: 294 HMVAAHTPSQPPCS--SDEHKGQHHM--LHSPGIQ--TQH-------YPRLQQHEENHH 157
           H    H P+ PP    SD   G HH   L    +Q  TQH       +P LQQH   HH
Sbjct: 6   HYYPVHHPTAPPVVKYSDLLYGHHHSANLQPTSLQNYTQHSVSSIPEHPSLQQHHHQHH 64

>CUT_DROME (P10180) Homeobox protein cut|
          Length = 2175

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = -3

Query: 243 HKGQHHMLHSPGIQTQHYPRLQQHEENHHLVAWKSDFDQQNVCIPHGY*MCPPATNQLHH 64
           H+ Q H       Q QH+ +   H+++HH         QQ    P+      PA+N  HH
Sbjct: 666 HQQQQHHQQQHQHQQQHHQQQHLHQQHHH------HLQQQ----PNSGSNSNPASNDHHH 715

Query: 63  CRHLSSY 43
             HL  +
Sbjct: 716 GHHLHGH 722

>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)|
          Length = 657

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
 Frame = -3

Query: 309 EHYHGHMVAAHTPSQPPCSSDEHKGQHHMLH------SPGIQTQHYPRLQQHEENHH 157
           EH+H H    H   Q P  +  H+  HH  H      +P +  Q + + Q H  +HH
Sbjct: 62  EHHHHHHHHHHHQHQAPHQA-PHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHH 117

>CID_DROME (P19538) Protein cubitus interruptus|
          Length = 1397

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 294 HMVAAHTPSQPPCSSDEHKGQHHMLHSPGIQTQHYPRLQQHEENHHLV 151
           H +  H     PCS D H G+     SP I+++          NHHLV
Sbjct: 632 HNLQEHNIDSSPCSEDSHLGKMLGTSSPSIKSES----DISSSNHHLV 675

>DTX3_MOUSE (Q80V91) Protein deltex-3 (Deltex-3) (Deltex3) (mDTX3)|
          Length = 347

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +3

Query: 114 CTRFAGQNLTSMPQDGDFLRVAAVGDNAEFVFLDYATYGVVLYVHLRSRVVEKVYEQPPY 293
           C RF GQ + + PQ+G  L    V  +A  +   Y  YG ++  ++    V+      P 
Sbjct: 202 CGRFYGQLVGNQPQNGRML----VSKDATLLLPSYEKYGTIVIQYVFPPGVQGAEHPNP- 256

Query: 294 GHGNVHPGISRIHISP 341
             G  +PG +R+   P
Sbjct: 257 --GVRYPGTTRVAYLP 270

>DTX3_HUMAN (Q8N9I9) Protein deltex-3 (Deltex-3) (Deltex3)|
          Length = 347

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +3

Query: 114 CTRFAGQNLTSMPQDGDFLRVAAVGDNAEFVFLDYATYGVVLYVHLRSRVVEKVYEQPPY 293
           C RF GQ + + PQ+G  L    V  +A  +   Y  YG ++  ++    V+      P 
Sbjct: 202 CGRFYGQLVGNQPQNGRML----VSKDATLLLPSYEKYGTIVIQYVFPPGVQGAEHPNP- 256

Query: 294 GHGNVHPGISRIHISP 341
             G  +PG +R+   P
Sbjct: 257 --GVRYPGTTRVAYLP 270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,689,046
Number of Sequences: 219361
Number of extensions: 2261917
Number of successful extensions: 6502
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6422
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)