ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31e24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190044.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 945 Score = 387 bits (195), Expect = e-104 Identities = 468/559 (83%) Strand = Plus / Plus Query: 42 ctcggccgctcgctcaggctcgacgtgctctaccccgtcggcggcttcacccgctgcctc 101 ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| Sbjct: 202 ctcggccgctcgctccgcctcgacgtgctctaccccgtcggcggcttcacccgatgcctc 261 Query: 102 gactccgacaacggattcgagttcatctatccagcaaactgggttggagaccagacaata 161 ||||||||||| |||||||||||||| |||||||||| |||||||||||| |||||| | Sbjct: 262 gactccgacaatggattcgagttcatatatccagcaagctgggttggagatcagacattg 321 Query: 162 ctatacaatcaaattaagaaggcagaactgcagagatcgctagaccctccgccgttgaca 221 ||||||| | |||| ||||||||||||||||| ||||||||||| || ||| || Sbjct: 322 ctatacagaggagcgaagagagcagaactgcagagatcactagaccctcccccattggca 381 Query: 222 agcgggggttcttcgactcgacctcggaacgtcagtggaccggtggcagcttttggcccc 281 | ||| | || | | || ||||||||| |||||| ||| |||||||||||||||||| Sbjct: 382 aatgggaggtccccatcacggcctcggaacatcagtgaacctgtggcagcttttggcccc 441 Query: 282 ccgggatccaacggggagctcaacgtcagcgtcattgtgtcgaccgtcccacaagacttc 341 || ||||||| ||||||||||| ||||| ||||| || || | ||||||||||| ||| Sbjct: 442 ccaggatccagtggggagctcaatgtcagtgtcatcgtttcacctgtcccacaagatttc 501 Query: 342 tcgattgagtcttttggcggtcctaaagatgtcggggaagtggtgctgaggaggatcgca 401 ||||| ||| ||||||| || ||||||||||| ||||| ||||| || || ||||||||| Sbjct: 502 tcgatcgaggcttttggtggccctaaagatgttggggaggtggttctcagaaggatcgca 561 Query: 402 aggacaaagcggaacccggatatcagcgccactctgatcggtgccgcgttgagagaagac 461 | |||||||||| | | ||||| | ||||||||| | | ||| || |||||||||| Sbjct: 562 aagacaaagcggggcgcagatataaacgccactcttcttgatgctgccctgagagaagat 621 Query: 462 accgtgaacaatgtgaaatactacaagctggagttccgagtcgagagcccttccttccga 521 | | |||||||||||||||||||||||| ||||||||||| || ||||||||||| ||| Sbjct: 622 ccagcgaacaatgtgaaatactacaagctagagttccgagttgaaagcccttcctttcga 681 Query: 522 cggcacaatgtggcggtgtgctgcgcgagagacggcaaactttacaccttgaatgcccag 581 || | |||||| || ||||||||||||| || || ||||| |||||| |||| || ||| Sbjct: 682 cgacgcaatgtcgcagtgtgctgcgcgaaggatgggaaactatacaccctgaacgctcag 741 Query: 582 gcaccggagtcggcatgga 600 || ||||||||||| |||| Sbjct: 742 gctccggagtcggcgtgga 760
>dbj|AK058904.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-C06, full insert sequence Length = 721 Score = 262 bits (132), Expect = 1e-66 Identities = 397/484 (82%), Gaps = 1/484 (0%) Strand = Plus / Plus Query: 117 ttcgagttcatctatccagcaaactgggttggagaccagacaatactatacaatcaaatt 176 ||||||||||| |||||||||| |||||||||||| |||||| | ||||||| | Sbjct: 1 ttcgagttcatatatccagcaagctgggttggagatcagacattgctatacagaggagcg 60 Query: 177 aagaaggcagaactgcagagatcgctagaccctccgccgttgacaagcgggggttcttcg 236 |||| ||||||||||||||||| ||||||||||| || ||| ||| ||| | || | Sbjct: 61 aagagagcagaactgcagagatcactagaccctcccccattggcaaatgggaggtcccca 120 Query: 237 actcgacctcggaacgtcagtggaccggtggcagcttttggccccccgggatccaacggg 296 | || ||||||||| |||||| ||| |||||||||||||||||||| ||||||| ||| Sbjct: 121 tcacggcctcggaacatcagtgaacctgtggcagcttttggccccccaggatccagtggg 180 Query: 297 gagctcaacgtcagcgtcattgtgtcgaccgtcccacaagacttctcgattgagtctttt 356 |||||||| ||||| ||||| || || | ||||||||||| |||||||| ||| ||||| Sbjct: 181 gagctcaatgtcagtgtcatcgtttcacctgtcccacaaga-ttctcgatcgaggctttt 239 Query: 357 ggcggtcctaaagatgtcggggaagtggtgctgaggaggatcgcaaggacaaagcggaac 416 || || ||||||||||| ||||| ||||| || || |||||||||| |||||||||| | Sbjct: 240 ggtggccctaaagatgttggggaggtggttctcagaaggatcgcaaagacaaagcggggc 299 Query: 417 ccggatatcagcgccactctgatcggtgccgcgttgagagaagacaccgtgaacaatgtg 476 | ||||| | ||||||||| | | ||| || |||||||||| | | |||||||||| Sbjct: 300 gcagatataaacgccactcttcttgatgctgccctgagagaagatccagcgaacaatgtg 359 Query: 477 aaatactacaagctggagttccgagtcgagagcccttccttccgacggcacaatgtggcg 536 |||||||||||||| ||||||||||| || ||||||||||| ||||| | |||||| || Sbjct: 360 aaatactacaagctagagttccgagttgaaagcccttcctttcgacgacgcaatgtcgca 419 Query: 537 gtgtgctgcgcgagagacggcaaactttacaccttgaatgcccaggcaccggagtcggca 596 ||||||||||||| || || ||||| |||||| |||| || ||||| ||||||||||| Sbjct: 420 gtgtgctgcgcgaaggatgggaaactatacaccctgaacgctcaggctccggagtcggcg 479 Query: 597 tgga 600 |||| Sbjct: 480 tgga 483
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 153 bits (77), Expect = 8e-34 Identities = 206/249 (82%) Strand = Plus / Plus Query: 352 cttttggcggtcctaaagatgtcggggaagtggtgctgaggaggatcgcaaggacaaagc 411 ||||||| || ||||||||||| ||||| ||||| || || |||||||||| |||||||| Sbjct: 40989181 cttttggtggccctaaagatgttggggaggtggttctcagaaggatcgcaaagacaaagc 40989240 Query: 412 ggaacccggatatcagcgccactctgatcggtgccgcgttgagagaagacaccgtgaaca 471 || | | ||||| | ||||||||| | | ||| || |||||||||| | | ||||| Sbjct: 40989241 ggggcgcagatataaacgccactcttcttgatgctgccctgagagaagatccagcgaaca 40989300 Query: 472 atgtgaaatactacaagctggagttccgagtcgagagcccttccttccgacggcacaatg 531 ||||||||||||||||||| ||||||||||| || ||||||||||| ||||| | ||||| Sbjct: 40989301 atgtgaaatactacaagctagagttccgagttgaaagcccttcctttcgacgacgcaatg 40989360 Query: 532 tggcggtgtgctgcgcgagagacggcaaactttacaccttgaatgcccaggcaccggagt 591 | || ||||||||||||| || || ||||| |||||| |||| || ||||| ||||||| Sbjct: 40989361 tcgcagtgtgctgcgcgaaggatgggaaactatacaccctgaacgctcaggctccggagt 40989420 Query: 592 cggcatgga 600 |||| |||| Sbjct: 40989421 cggcgtgga 40989429 Score = 125 bits (63), Expect = 2e-25 Identities = 75/79 (94%) Strand = Plus / Plus Query: 42 ctcggccgctcgctcaggctcgacgtgctctaccccgtcggcggcttcacccgctgcctc 101 ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| Sbjct: 40986893 ctcggccgctcgctccgcctcgacgtgctctaccccgtcggcggcttcacccgatgcctc 40986952 Query: 102 gactccgacaacggattcg 120 ||||||||||| ||||||| Sbjct: 40986953 gactccgacaatggattcg 40986971 Score = 113 bits (57), Expect = 7e-22 Identities = 183/225 (81%) Strand = Plus / Plus Query: 120 gagttcatctatccagcaaactgggttggagaccagacaatactatacaatcaaattaag 179 |||||||| |||||||||| |||||||||||| |||||| | ||||||| | ||| Sbjct: 40988695 gagttcatatatccagcaagctgggttggagatcagacattgctatacagaggagcgaag 40988754 Query: 180 aaggcagaactgcagagatcgctagaccctccgccgttgacaagcgggggttcttcgact 239 | ||||||||||||||||| ||||||||||| || ||| ||| ||| | || | | Sbjct: 40988755 agagcagaactgcagagatcactagaccctcccccattggcaaatgggaggtccccatca 40988814 Query: 240 cgacctcggaacgtcagtggaccggtggcagcttttggccccccgggatccaacggggag 299 || ||||||||| |||||| ||| |||||||||||||||||||| ||||||| |||||| Sbjct: 40988815 cggcctcggaacatcagtgaacctgtggcagcttttggccccccaggatccagtggggag 40988874 Query: 300 ctcaacgtcagcgtcattgtgtcgaccgtcccacaagacttctcg 344 ||||| ||||| ||||| || || | ||||||||||| |||||| Sbjct: 40988875 ctcaatgtcagtgtcatcgtttcacctgtcccacaagatttctcg 40988919
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 153 bits (77), Expect = 8e-34 Identities = 206/249 (82%) Strand = Plus / Plus Query: 352 cttttggcggtcctaaagatgtcggggaagtggtgctgaggaggatcgcaaggacaaagc 411 ||||||| || ||||||||||| ||||| ||||| || || |||||||||| |||||||| Sbjct: 26111 cttttggtggccctaaagatgttggggaggtggttctcagaaggatcgcaaagacaaagc 26170 Query: 412 ggaacccggatatcagcgccactctgatcggtgccgcgttgagagaagacaccgtgaaca 471 || | | ||||| | ||||||||| | | ||| || |||||||||| | | ||||| Sbjct: 26171 ggggcgcagatataaacgccactcttcttgatgctgccctgagagaagatccagcgaaca 26230 Query: 472 atgtgaaatactacaagctggagttccgagtcgagagcccttccttccgacggcacaatg 531 ||||||||||||||||||| ||||||||||| || ||||||||||| ||||| | ||||| Sbjct: 26231 atgtgaaatactacaagctagagttccgagttgaaagcccttcctttcgacgacgcaatg 26290 Query: 532 tggcggtgtgctgcgcgagagacggcaaactttacaccttgaatgcccaggcaccggagt 591 | || ||||||||||||| || || ||||| |||||| |||| || ||||| ||||||| Sbjct: 26291 tcgcagtgtgctgcgcgaaggatgggaaactatacaccctgaacgctcaggctccggagt 26350 Query: 592 cggcatgga 600 |||| |||| Sbjct: 26351 cggcgtgga 26359 Score = 125 bits (63), Expect = 2e-25 Identities = 75/79 (94%) Strand = Plus / Plus Query: 42 ctcggccgctcgctcaggctcgacgtgctctaccccgtcggcggcttcacccgctgcctc 101 ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| Sbjct: 23823 ctcggccgctcgctccgcctcgacgtgctctaccccgtcggcggcttcacccgatgcctc 23882 Query: 102 gactccgacaacggattcg 120 ||||||||||| ||||||| Sbjct: 23883 gactccgacaatggattcg 23901 Score = 113 bits (57), Expect = 7e-22 Identities = 183/225 (81%) Strand = Plus / Plus Query: 120 gagttcatctatccagcaaactgggttggagaccagacaatactatacaatcaaattaag 179 |||||||| |||||||||| |||||||||||| |||||| | ||||||| | ||| Sbjct: 25625 gagttcatatatccagcaagctgggttggagatcagacattgctatacagaggagcgaag 25684 Query: 180 aaggcagaactgcagagatcgctagaccctccgccgttgacaagcgggggttcttcgact 239 | ||||||||||||||||| ||||||||||| || ||| ||| ||| | || | | Sbjct: 25685 agagcagaactgcagagatcactagaccctcccccattggcaaatgggaggtccccatca 25744 Query: 240 cgacctcggaacgtcagtggaccggtggcagcttttggccccccgggatccaacggggag 299 || ||||||||| |||||| ||| |||||||||||||||||||| ||||||| |||||| Sbjct: 25745 cggcctcggaacatcagtgaacctgtggcagcttttggccccccaggatccagtggggag 25804 Query: 300 ctcaacgtcagcgtcattgtgtcgaccgtcccacaagacttctcg 344 ||||| ||||| ||||| || || | ||||||||||| |||||| Sbjct: 25805 ctcaatgtcagtgtcatcgtttcacctgtcccacaagatttctcg 25849
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 153 bits (77), Expect = 8e-34 Identities = 206/249 (82%) Strand = Plus / Plus Query: 352 cttttggcggtcctaaagatgtcggggaagtggtgctgaggaggatcgcaaggacaaagc 411 ||||||| || ||||||||||| ||||| ||||| || || |||||||||| |||||||| Sbjct: 117606 cttttggtggccctaaagatgttggggaggtggttctcagaaggatcgcaaagacaaagc 117665 Query: 412 ggaacccggatatcagcgccactctgatcggtgccgcgttgagagaagacaccgtgaaca 471 || | | ||||| | ||||||||| | | ||| || |||||||||| | | ||||| Sbjct: 117666 ggggcgcagatataaacgccactcttcttgatgctgccctgagagaagatccagcgaaca 117725 Query: 472 atgtgaaatactacaagctggagttccgagtcgagagcccttccttccgacggcacaatg 531 ||||||||||||||||||| ||||||||||| || ||||||||||| ||||| | ||||| Sbjct: 117726 atgtgaaatactacaagctagagttccgagttgaaagcccttcctttcgacgacgcaatg 117785 Query: 532 tggcggtgtgctgcgcgagagacggcaaactttacaccttgaatgcccaggcaccggagt 591 | || ||||||||||||| || || ||||| |||||| |||| || ||||| ||||||| Sbjct: 117786 tcgcagtgtgctgcgcgaaggatgggaaactatacaccctgaacgctcaggctccggagt 117845 Query: 592 cggcatgga 600 |||| |||| Sbjct: 117846 cggcgtgga 117854 Score = 125 bits (63), Expect = 2e-25 Identities = 75/79 (94%) Strand = Plus / Plus Query: 42 ctcggccgctcgctcaggctcgacgtgctctaccccgtcggcggcttcacccgctgcctc 101 ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| Sbjct: 115318 ctcggccgctcgctccgcctcgacgtgctctaccccgtcggcggcttcacccgatgcctc 115377 Query: 102 gactccgacaacggattcg 120 ||||||||||| ||||||| Sbjct: 115378 gactccgacaatggattcg 115396 Score = 113 bits (57), Expect = 7e-22 Identities = 183/225 (81%) Strand = Plus / Plus Query: 120 gagttcatctatccagcaaactgggttggagaccagacaatactatacaatcaaattaag 179 |||||||| |||||||||| |||||||||||| |||||| | ||||||| | ||| Sbjct: 117120 gagttcatatatccagcaagctgggttggagatcagacattgctatacagaggagcgaag 117179 Query: 180 aaggcagaactgcagagatcgctagaccctccgccgttgacaagcgggggttcttcgact 239 | ||||||||||||||||| ||||||||||| || ||| ||| ||| | || | | Sbjct: 117180 agagcagaactgcagagatcactagaccctcccccattggcaaatgggaggtccccatca 117239 Query: 240 cgacctcggaacgtcagtggaccggtggcagcttttggccccccgggatccaacggggag 299 || ||||||||| |||||| ||| |||||||||||||||||||| ||||||| |||||| Sbjct: 117240 cggcctcggaacatcagtgaacctgtggcagcttttggccccccaggatccagtggggag 117299 Query: 300 ctcaacgtcagcgtcattgtgtcgaccgtcccacaagacttctcg 344 ||||| ||||| ||||| || || | ||||||||||| |||||| Sbjct: 117300 ctcaatgtcagtgtcatcgtttcacctgtcccacaagatttctcg 117344
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 17 cttcctcctcggcctctccccgg 39 ||||||||||||||||||||||| Sbjct: 226667 cttcctcctcggcctctccccgg 226645
>ref|XM_789881.1| PREDICTED: Strongylocentrotus purpuratus similar to AF-10 protein (LOC590272), mRNA Length = 3301 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tgaggaggatcgcaaggacaa 408 ||||||||||||||||||||| Sbjct: 1546 tgaggaggatcgcaaggacaa 1566
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 ctatacaatcaaattaagaa 181 |||||||||||||||||||| Sbjct: 1230079 ctatacaatcaaattaagaa 1230098
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 ctatacaatcaaattaagaa 181 |||||||||||||||||||| Sbjct: 1230025 ctatacaatcaaattaagaa 1230044
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 cttcctcctcggcctctccc 36 |||||||||||||||||||| Sbjct: 28596636 cttcctcctcggcctctccc 28596617
>emb|AL445645.10| Human DNA sequence from clone RP11-295G24 on chromosome 9 Contains the TSC1 gene for tuberous sclerosis 1, the C9orf9 gene for chromosome 9 open reading frame 9 protein, the 5' end of gene FLJ32704, two novel gene, the 5' end of a novel gene and three CpG islands, complete sequence Length = 199113 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 aaattaagaaggcagaactg 191 |||||||||||||||||||| Sbjct: 171302 aaattaagaaggcagaactg 171283
>gb|AC166262.3| Mus musculus BAC RP23-256D10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 175073 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 aagaaggcagaactgcagag 196 |||||||||||||||||||| Sbjct: 128940 aagaaggcagaactgcagag 128921
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 79 tcggcggcttcacccgctgcctcg 102 |||||||| ||||||||||||||| Sbjct: 282741 tcggcggcgtcacccgctgcctcg 282764
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 cttcctcctcggcctctccc 36 |||||||||||||||||||| Sbjct: 28687960 cttcctcctcggcctctccc 28687941
>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete sequence Length = 158839 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 cttcctcctcggcctctccc 36 |||||||||||||||||||| Sbjct: 102260 cttcctcctcggcctctccc 102279
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 gtcagtggaccggtggcagc 271 |||||||||||||||||||| Sbjct: 1896226 gtcagtggaccggtggcagc 1896207
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 ctatacaatcaaattaagaa 181 |||||||||||||||||||| Sbjct: 1229957 ctatacaatcaaattaagaa 1229976
>gb|AC153542.4| Mus musculus 10 BAC RP23-463O2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187858 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 aagaaggcagaactgcagag 196 |||||||||||||||||||| Sbjct: 50487 aagaaggcagaactgcagag 50468 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,430,489 Number of Sequences: 3902068 Number of extensions: 3430489 Number of successful extensions: 67317 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67117 Number of HSP's gapped (non-prelim): 194 length of query: 607 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 584 effective length of database: 17,143,297,704 effective search space: 10011685859136 effective search space used: 10011685859136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
