ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags31e19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043H11, full insert sequence Length = 1418 Score = 252 bits (127), Expect = 1e-63 Identities = 241/275 (87%), Gaps = 3/275 (1%) Strand = Plus / Plus Query: 1 tgtgaaggcaagnacttcagtcgaagcaaatgatcgacgatgacaagnaggcatcgctac 60 |||||||||||| ||||||| ||||||||| || || ||||||||| ||||| |||||| Sbjct: 840 tgtgaaggcaag-acttcaggtgaagcaaataattgatgatgacaag-aggcaccgctac 897 Query: 61 aaaggcacgtttgatgcaatcacaaaaatgatgcattatgaaggcctgtcagggctttat 120 |||||||| |||||||| |||||||| ||||| | ||||||||| |||||||||||||| Sbjct: 898 aaaggcacatttgatgcgatcacaaagatgatacgttatgaaggtttgtcagggctttat 957 Query: 121 aaaggaatgggcacaaaaattgtacagcagtgtttttgcttctgctctcctttttatgat 180 ||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 958 aaaggaatgagcacaaaaatcgtacaa-agtgtttttgcttctgctctcctttttatgat 1016 Query: 181 caaggaggagctggtgaaaggtgctcgattcttggtaaccggtgacaccagcctggtaaa 240 |||||||| |||||||| || |||||||| ||||||||||| |||||||||| || || Sbjct: 1017 taaggaggaactggtgaagggcgctcgattattggtaaccggcaacaccagccttgttaa 1076 Query: 241 gaagttgccttcaaagccctcaagatgatcaaggt 275 |||||| || || ||||| | ||||||||| |||| Sbjct: 1077 gaagttaccatcgaagccattaagatgatctaggt 1111
>ref|NM_187455.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1035 Score = 246 bits (124), Expect = 6e-62 Identities = 235/268 (87%), Gaps = 3/268 (1%) Strand = Plus / Plus Query: 1 tgtgaaggcaagnacttcagtcgaagcaaatgatcgacgatgacaagnaggcatcgctac 60 |||||||||||| ||||||| ||||||||| || || ||||||||| ||||| |||||| Sbjct: 771 tgtgaaggcaag-acttcaggtgaagcaaataattgatgatgacaag-aggcaccgctac 828 Query: 61 aaaggcacgtttgatgcaatcacaaaaatgatgcattatgaaggcctgtcagggctttat 120 |||||||| |||||||| |||||||| ||||| | ||||||||| |||||||||||||| Sbjct: 829 aaaggcacatttgatgcgatcacaaagatgatacgttatgaaggtttgtcagggctttat 888 Query: 121 aaaggaatgggcacaaaaattgtacagcagtgtttttgcttctgctctcctttttatgat 180 ||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 889 aaaggaatgagcacaaaaatcgtacaa-agtgtttttgcttctgctctcctttttatgat 947 Query: 181 caaggaggagctggtgaaaggtgctcgattcttggtaaccggtgacaccagcctggtaaa 240 |||||||| |||||||| || |||||||| ||||||||||| |||||||||| || || Sbjct: 948 taaggaggaactggtgaagggcgctcgattattggtaaccggcaacaccagccttgttaa 1007 Query: 241 gaagttgccttcaaagccctcaagatga 268 |||||| || || ||||| | ||||||| Sbjct: 1008 gaagttaccatcgaagccattaagatga 1035
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 208 bits (105), Expect = 1e-50 Identities = 187/213 (87%), Gaps = 1/213 (0%) Strand = Plus / Plus Query: 63 aggcacgtttgatgcaatcacaaaaatgatgcattatgaaggcctgtcagggctttataa 122 |||||| |||||||| |||||||| ||||| | ||||||||| |||||||||||||||| Sbjct: 8724662 aggcacatttgatgcgatcacaaagatgatacgttatgaaggtttgtcagggctttataa 8724721 Query: 123 aggaatgggcacaaaaattgtacagcagtgtttttgcttctgctctcctttttatgatca 182 ||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct: 8724722 aggaatgagcacaaaaatcgtacaa-agtgtttttgcttctgctctcctttttatgatta 8724780 Query: 183 aggaggagctggtgaaaggtgctcgattcttggtaaccggtgacaccagcctggtaaaga 242 ||||||| |||||||| || |||||||| ||||||||||| |||||||||| || |||| Sbjct: 8724781 aggaggaactggtgaagggcgctcgattattggtaaccggcaacaccagccttgttaaga 8724840 Query: 243 agttgccttcaaagccctcaagatgatcaaggt 275 |||| || || ||||| | ||||||||| |||| Sbjct: 8724841 agttaccatcgaagccattaagatgatctaggt 8724873
>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02, complete sequence Length = 115270 Score = 208 bits (105), Expect = 1e-50 Identities = 187/213 (87%), Gaps = 1/213 (0%) Strand = Plus / Plus Query: 63 aggcacgtttgatgcaatcacaaaaatgatgcattatgaaggcctgtcagggctttataa 122 |||||| |||||||| |||||||| ||||| | ||||||||| |||||||||||||||| Sbjct: 68313 aggcacatttgatgcgatcacaaagatgatacgttatgaaggtttgtcagggctttataa 68372 Query: 123 aggaatgggcacaaaaattgtacagcagtgtttttgcttctgctctcctttttatgatca 182 ||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct: 68373 aggaatgagcacaaaaatcgtacaa-agtgtttttgcttctgctctcctttttatgatta 68431 Query: 183 aggaggagctggtgaaaggtgctcgattcttggtaaccggtgacaccagcctggtaaaga 242 ||||||| |||||||| || |||||||| ||||||||||| |||||||||| || |||| Sbjct: 68432 aggaggaactggtgaagggcgctcgattattggtaaccggcaacaccagccttgttaaga 68491 Query: 243 agttgccttcaaagccctcaagatgatcaaggt 275 |||| || || ||||| | ||||||||| |||| Sbjct: 68492 agttaccatcgaagccattaagatgatctaggt 68524
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 208 bits (105), Expect = 1e-50 Identities = 187/213 (87%), Gaps = 1/213 (0%) Strand = Plus / Plus Query: 63 aggcacgtttgatgcaatcacaaaaatgatgcattatgaaggcctgtcagggctttataa 122 |||||| |||||||| |||||||| ||||| | ||||||||| |||||||||||||||| Sbjct: 8722497 aggcacatttgatgcgatcacaaagatgatacgttatgaaggtttgtcagggctttataa 8722556 Query: 123 aggaatgggcacaaaaattgtacagcagtgtttttgcttctgctctcctttttatgatca 182 ||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct: 8722557 aggaatgagcacaaaaatcgtacaa-agtgtttttgcttctgctctcctttttatgatta 8722615 Query: 183 aggaggagctggtgaaaggtgctcgattcttggtaaccggtgacaccagcctggtaaaga 242 ||||||| |||||||| || |||||||| ||||||||||| |||||||||| || |||| Sbjct: 8722616 aggaggaactggtgaagggcgctcgattattggtaaccggcaacaccagccttgttaaga 8722675 Query: 243 agttgccttcaaagccctcaagatgatcaaggt 275 |||| || || ||||| | ||||||||| |||| Sbjct: 8722676 agttaccatcgaagccattaagatgatctaggt 8722708
>gb|AY111492.1| Zea mays CL4538_1 mRNA sequence Length = 669 Score = 63.9 bits (32), Expect = 5e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 177 tgatcaaggaggagctggtgaaaggtgctcgattcttggtaaccggtgacaccagcctgg 236 |||| ||||||||||||||||| ||||||||| | |||||||| ||| |||| || |||| Sbjct: 355 tgattaaggaggagctggtgaagggtgctcgactattggtaactggtaacactagtctgg 296 Query: 237 taaagaagttgccttcaaagccctcaagatga 268 | ||||| | || |||||| | ||||||||| Sbjct: 295 ttaagaaactaccatcaaagtcatcaagatga 264 Score = 56.0 bits (28), Expect = 1e-04 Identities = 105/128 (82%), Gaps = 2/128 (1%) Strand = Plus / Minus Query: 5 aaggcaagnacttcagtcgaagcaaatgatcgacgatgacaagnaggcatcgctacaaag 64 |||||||| ||||||| | ||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 524 aaggcaag-acttcaggcaaagcacatgattaacgatgacaag-aggcatcgctacaaag 467 Query: 65 gcacgtttgatgcaatcacaaaaatgatgcattatgaaggcctgtcagggctttataaag 124 | || ||||||| || |||| ||| | | ||||| || ||||||||| | || |||| Sbjct: 466 gtacacttgatgcgttcccaaagatggtacgatatgagggtctgtcagggatgtacaaag 407 Query: 125 gaatgggc 132 |||||||| Sbjct: 406 gaatgggc 399
>gb|AC122491.3| Mus musculus BAC clone RP24-390D3 from chromosome 3, complete sequence Length = 175092 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 493 aatgttgaaagataaaaaataa 514 |||||||||||||||||||||| Sbjct: 140915 aatgttgaaagataaaaaataa 140894
>gb|AC138642.10| Mus musculus chromosome 3, clone RP23-21O7, complete sequence Length = 252108 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 493 aatgttgaaagataaaaaataa 514 |||||||||||||||||||||| Sbjct: 35612 aatgttgaaagataaaaaataa 35591
>emb|AL845324.16| Zebrafish DNA sequence from clone CH211-122L14 in linkage group 20, complete sequence Length = 160892 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 79 atcacaaaaatgatgcattatg 100 |||||||||||||||||||||| Sbjct: 47563 atcacaaaaatgatgcattatg 47542
>gb|AY578861.1| Drosophila mojavensis microsatellite DMOJ3040 sequence Length = 612 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 tttgcttctgctctccttttt 175 ||||||||||||||||||||| Sbjct: 521 tttgcttctgctctccttttt 541
>gb|AC146084.2| Pan troglodytes BAC clone RP43-56L21 from 7, complete sequence Length = 152170 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 ttttgcttctgctctcctttt 174 ||||||||||||||||||||| Sbjct: 145880 ttttgcttctgctctcctttt 145860
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 gataggatatttgagccattc 469 ||||||||||||||||||||| Sbjct: 5448205 gataggatatttgagccattc 5448185
>gb|AC074386.6| Homo sapiens BAC clone RP11-464H1 from 7, complete sequence Length = 66610 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 tgtttttgcttctgctctccttttt 175 |||||||||||||| |||||||||| Sbjct: 7925 tgtttttgcttctgttctccttttt 7949
>emb|AL356318.7| Human DNA sequence from clone RP11-161E22 on chromosome 9 Contains part of the TRPM3 gene for transient receptor potential cation channel subfamily M, member 3 (MLSN2, LTRPC3, FLJ11726) and a pseudogene similar to part of CDC91 cell division cycle 91-like 1 (S. cerevisiae) (CDC91L1), complete sequence Length = 141339 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 438 ttatacatttggataggatat 458 ||||||||||||||||||||| Sbjct: 123784 ttatacatttggataggatat 123764
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 178 gatcaaggaggagctggtgaaaggt 202 ||||||||||||||||| ||||||| Sbjct: 3049341 gatcaaggaggagctggcgaaaggt 3049317
>emb|CR749203.1| Homo sapiens mRNA; cDNA DKFZp686N1969 (from clone DKFZp686N1969) Length = 5058 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 151 tgtttttgcttctgctctccttttt 175 |||||||||||||| |||||||||| Sbjct: 885 tgtttttgcttctgttctccttttt 861
>ref|XM_935749.1| PREDICTED: Homo sapiens similar to rho guanine nucleotide exchange factor 5 isoform 1, transcript variant 1 (LOC653855), mRNA Length = 5437 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 151 tgtttttgcttctgctctccttttt 175 |||||||||||||| |||||||||| Sbjct: 1137 tgtttttgcttctgttctccttttt 1113
>ref|XM_930437.1| PREDICTED: Homo sapiens similar to rho guanine nucleotide exchange factor 5 isoform 1, transcript variant 1 (LOC653700), mRNA Length = 5437 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 151 tgtttttgcttctgctctccttttt 175 |||||||||||||| |||||||||| Sbjct: 1137 tgtttttgcttctgttctccttttt 1113
>gb|AC163675.4| Mus musculus BAC clone RP23-9G21 from chromosome 6, complete sequence Length = 243690 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 tttgcttctgctctcctttt 174 |||||||||||||||||||| Sbjct: 41404 tttgcttctgctctcctttt 41385
>gb|AC121319.9| Mus musculus chromosome 15, clone RP24-435O18, complete sequence Length = 159038 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ctgtcagggctttataaagg 125 |||||||||||||||||||| Sbjct: 94403 ctgtcagggctttataaagg 94384
>gb|AC161581.3| Mus musculus chromosome 15, clone RP24-75A19, complete sequence Length = 210059 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ctgtcagggctttataaagg 125 |||||||||||||||||||| Sbjct: 190808 ctgtcagggctttataaagg 190827
>gb|AC159310.3| Mus musculus BAC clone RP23-158N20 from chromosome 6, complete sequence Length = 222024 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 tttgcttctgctctcctttt 174 |||||||||||||||||||| Sbjct: 193253 tttgcttctgctctcctttt 193234 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 tttgcttctgctctcctttt 174 |||||||||||||||||||| Sbjct: 96550 tttgcttctgctctcctttt 96531
>ref|XM_425981.1| PREDICTED: Gallus gallus similar to cardiac calcium channel beta-subunit CaB2a (splice variant of the gene CaB2 (LOC428420), mRNA Length = 2079 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 acggtgaccactatgattct 419 |||||||||||||||||||| Sbjct: 1835 acggtgaccactatgattct 1854
>gb|AC135117.3| Mus musculus BAC clone RP24-444P19 from chromosome 6, complete sequence Length = 166651 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 tttgcttctgctctcctttt 174 |||||||||||||||||||| Sbjct: 93273 tttgcttctgctctcctttt 93254
>gb|AC132581.4| Mus musculus BAC clone RP24-390D8 from chromosome 6, complete sequence Length = 172240 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 tttgcttctgctctcctttt 174 |||||||||||||||||||| Sbjct: 19303 tttgcttctgctctcctttt 19322
>emb|CR933523.10| Zebrafish DNA sequence from clone CH211-127H20 in linkage group 8, complete sequence Length = 112751 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 113 ggctttataaaggaatgggcacaaaaat 140 ||||||||||| ||||||||||||||| Sbjct: 45801 ggctttataaacaaatgggcacaaaaat 45828
>emb|AL365178.10| Human DNA sequence from clone RP11-454L1 on chromosome 1 Contains the 3' end of the CR1L gene for complement component (3b/4b) receptor 1-like and the 5' end of the MCP gene for membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen), complete sequence Length = 71858 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 atgtacactttgagattata 400 |||||||||||||||||||| Sbjct: 21524 atgtacactttgagattata 21543
>gb|AC022773.17| Mus musculus chromosome X, clone RP23-157B8, complete sequence Length = 212031 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 aagttacagatggtagacataatg 377 |||||||||||||||| ||||||| Sbjct: 150160 aagttacagatggtagtcataatg 150183
>gb|AC015756.18| Homo sapiens chromosome , clone RP11-1L12, complete sequence Length = 180105 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 419 ttgtaggtactgggaaaaattata 442 ||||||||||| |||||||||||| Sbjct: 65482 ttgtaggtacttggaaaaattata 65459
>emb|AL031732.8|HS410I8 Human DNA sequence from clone RP3-410I8 on chromosome 1p35.1-36.23 Contains a tubulin-specific chaperone a (TBCA) pseudogene, complete sequence Length = 69017 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 494 atgttgaaagataaaaaataagtt 517 ||||||||||| |||||||||||| Sbjct: 27138 atgttgaaagaaaaaaaataagtt 27161
>emb|CR380839.1|PTB083D21 Pan troglodytes chromosome X BAC PTB-083D21, complete sequence Length = 186291 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 atgtaaaatatattcaggaa 494 |||||||||||||||||||| Sbjct: 103995 atgtaaaatatattcaggaa 103976
>gb|DP000062.1| Sus scrofa target 117 genomic scaffold Length = 605739 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 ataagttggtagtgagaatt 530 |||||||||||||||||||| Sbjct: 164627 ataagttggtagtgagaatt 164608
>dbj|AK157224.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830207C03 product:unclassifiable, full insert sequence Length = 4346 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 tttgcttctgctctcctttt 174 |||||||||||||||||||| Sbjct: 496 tttgcttctgctctcctttt 515
>gb|AC010913.9| Homo sapiens BAC clone RP11-44N22 from 2, complete sequence Length = 209161 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 ggaatgttgaaagataaaaa 510 |||||||||||||||||||| Sbjct: 144296 ggaatgttgaaagataaaaa 144315
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 gataggatatttgagccatt 468 |||||||||||||||||||| Sbjct: 2353426 gataggatatttgagccatt 2353445
>emb|BX255896.4| Zebrafish DNA sequence from clone CH211-249O11 in linkage group 2, complete sequence Length = 150289 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 aattgtacagcagtgttttt 157 |||||||||||||||||||| Sbjct: 148060 aattgtacagcagtgttttt 148041
>dbj|AB114184.1| Silene latifolia CCLS96.1-J1 mRNA, male preferentially transcribed sequence Length = 1869 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ggaatgggcacaaaaattgt 143 |||||||||||||||||||| Sbjct: 312 ggaatgggcacaaaaattgt 293
>dbj|AB094078.1| Silene latifolia DNA, CCLS96.1 homolog and ScD05 homolog Length = 7800 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ggaatgggcacaaaaattgt 143 |||||||||||||||||||| Sbjct: 2319 ggaatgggcacaaaaattgt 2300
>emb|AL357614.5|HS367B10 Homo sapiens chromosome 9 BAC RP11-367B10, complete sequence Length = 182378 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ttgaaagataaaaaataagt 516 |||||||||||||||||||| Sbjct: 86699 ttgaaagataaaaaataagt 86680
>emb|Z68318.2|CET21B10 Caenorhabditis elegans Cosmid T21B10, complete sequence Length = 31801 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 aaaggtgctcgattcttggtaacc 220 |||||| ||||||||||||||||| Sbjct: 24449 aaaggttctcgattcttggtaacc 24472
>emb|AJ810454.1| Gavialis gangeticus complete mitochondrial genome Length = 17023 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 ttatgaaggcctgtcagggcttta 119 |||||||||| ||||||||||||| Sbjct: 13556 ttatgaaggcttgtcagggcttta 13533
>emb|AJ288384.1|HUM288384 Hylocomiastrum umbratum atpB-rbcL non-coding spacer, clone 001 Length = 599 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 gggttagttgctgattatat 305 |||||||||||||||||||| Sbjct: 547 gggttagttgctgattatat 528
>emb|AL672060.9| Mouse DNA sequence from clone RP23-423L11 on chromosome X, complete sequence Length = 200698 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 aagttacagatggtagacataatg 377 |||||||||||||||| ||||||| Sbjct: 27006 aagttacagatggtagtcataatg 27029
>emb|AL805966.7| Mouse DNA sequence from clone RP23-305A10 on chromosome 4, complete sequence Length = 178898 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 ctgggaaaaattatacattt 447 |||||||||||||||||||| Sbjct: 74342 ctgggaaaaattatacattt 74361 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,815,647 Number of Sequences: 3902068 Number of extensions: 5815647 Number of successful extensions: 127000 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126800 Number of HSP's gapped (non-prelim): 193 length of query: 542 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 519 effective length of database: 17,143,297,704 effective search space: 8897371508376 effective search space used: 8897371508376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
