ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags31e13 |
|---|---|
| Clone Library Name | barley_pub |
>NMD3_YEAST (P38861) Nonsense-mediated mRNA decay protein 3| Length = 518 Score = 76.6 bits (187), Expect = 4e-14 Identities = 47/128 (36%), Positives = 67/128 (52%) Frame = +2 Query: 56 CTKVTNAIALLDPLTLRVHHLEEKKYRVYNFKAALTSKQLVQYMVLDIEPESPEITIDGS 235 C+K++N + +DP TL+ L Y F A QLV+++VLD++ I Sbjct: 276 CSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALADVTQLVEFIVLDVDSTG----ISRG 331 Query: 236 RYQLAYAQVARMSDFGKNDTVFTVRTHLGHRLNPGDLALGYDLYGANMNDDDMDKALLRQ 415 LA VAR SD G ND V+ VR+HLG + GD +GY + +N N D D L Sbjct: 332 NRVLADITVARTSDLGVNDQVYYVRSHLGGICHAGDSVMGYFIANSNYNSDLFD-GLNID 390 Query: 416 NLPEVILV 439 +P+V+LV Sbjct: 391 YVPDVVLV 398
>YAC3_SCHPO (Q09817) Hypothetical protein C16C9.03 in chromosome I| Length = 498 Score = 60.8 bits (146), Expect = 2e-09 Identities = 42/128 (32%), Positives = 62/128 (48%) Frame = +2 Query: 56 CTKVTNAIALLDPLTLRVHHLEEKKYRVYNFKAALTSKQLVQYMVLDIEPESPEITIDGS 235 CTKV I LDPLTL+ + Y F A +L +++V D++ P Sbjct: 280 CTKVGPTIRFLDPLTLQTCDMLPSIYWRTPFPALADIPELTEFIVADVDLLGP----TNG 335 Query: 236 RYQLAYAQVARMSDFGKNDTVFTVRTHLGHRLNPGDLALGYDLYGANMNDDDMDKALLRQ 415 +Y LA ++ + SD + RTHLG LN G+ L Y L N N++ D L Sbjct: 336 KYALADVELIKSSD----GSTHLTRTHLGGILNAGNTVLAYHLAVTNFNNEVYD-TLRED 390 Query: 416 NLPEVILV 439 ++PEV++V Sbjct: 391 SIPEVVIV 398
>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2| Length = 1009 Score = 31.2 bits (69), Expect = 1.7 Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 6/104 (5%) Frame = +2 Query: 104 RVHHLEEKKYRVYNFKAALTSKQLVQYMVLDIEPESPEITIDGS---RYQLAYAQVARMS 274 R E++K R + A ++++V V+ ++ S + + G ++ + + +++ Sbjct: 403 RAREREKEKRRGGAVEQARVAREVVIPDVITVQELSNRMAVRGVDIIKFLMRQGVMLKIN 462 Query: 275 DFGKNDTVFTVRTHLGH---RLNPGDLALGYDLYGANMNDDDMD 397 D NDT V T GH R++ D+ G+ GA+ +D+ MD Sbjct: 463 DVIDNDTAELVATEFGHTVKRVSEADVEEGF--IGADDHDEHMD 504
>LASP1_BOVIN (Q3B7M5) LIM and SH3 domain protein 1 (LASP-1)| Length = 260 Score = 31.2 bits (69), Expect = 1.7 Identities = 17/59 (28%), Positives = 26/59 (44%) Frame = -2 Query: 374 WHRRDHTQGQGPQGSDGAQDEFVL*TQYHFSQNQTSGQPAHMPAGTEIHQW*SQVTLAQ 198 +H GP G +G + E + + + Q QP H+PA T ++Q Q AQ Sbjct: 122 YHEEFEKSRMGPSGGEGLECERRDPQESSYRRPQEQQQPHHIPASTPVYQQPQQQPAAQ 180
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/62 (27%), Positives = 29/62 (46%) Frame = +2 Query: 146 FKAALTSKQLVQYMVLDIEPESPEITIDGSRYQLAYAQVARMSDFGKNDTVFTVRTHLGH 325 FK+ LT+ L ++ +P+ + DG +Y A+ F K D V+T +GH Sbjct: 1869 FKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGH 1928 Query: 326 RL 331 + Sbjct: 1929 TI 1930
>VPS16_MOUSE (Q920Q4) Vacuolar protein sorting 16 (mVPS16)| Length = 839 Score = 30.0 bits (66), Expect = 3.8 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Frame = +2 Query: 188 VLDIEPESPE---ITIDGSRYQLAYAQVARMSDFGKNDTVFTVRTHLGHRLNPGD 343 +L+ EP S E + + R +LA +++ + G D VFTV HL + LN GD Sbjct: 538 LLEYEPRSGEQVPLLLKMKRSKLA---LSKAIESGDTDLVFTVLLHLKNELNRGD 589
>VPS16_HUMAN (Q9H269) Vacuolar protein sorting 16 (hVPS16)| Length = 839 Score = 30.0 bits (66), Expect = 3.8 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Frame = +2 Query: 188 VLDIEPESPE---ITIDGSRYQLAYAQVARMSDFGKNDTVFTVRTHLGHRLNPGD 343 +L+ EP S E + + R +LA +++ + G D VFTV HL + LN GD Sbjct: 538 LLEYEPRSGEQVPLLLKMKRSKLA---LSKAIESGDTDLVFTVLLHLKNELNRGD 589
>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7094 Score = 30.0 bits (66), Expect = 3.8 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = +2 Query: 146 FKAALTSKQLVQYMVLDIEPESPEITIDGSRYQLAYAQVARMSDFGKNDTVFTVRTHLGH 325 FK+ LT+ L ++ +P+ + DG +Y A+ F K D V+T +GH Sbjct: 1869 FKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGH 1928
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 30.0 bits (66), Expect = 3.8 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +2 Query: 146 FKAALTSKQLVQYMVLDIEPESPEITIDGSRYQLAYAQVARMSDFGKNDTVFTVRTHLGH 325 FK+ LT+ L ++ P+ + DG +Y A+ F K D V+T +GH Sbjct: 1869 FKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGH 1928 Query: 326 RL 331 + Sbjct: 1929 TI 1930
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 30.0 bits (66), Expect = 3.8 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = +2 Query: 146 FKAALTSKQLVQYMVLDIEPESPEITIDGSRYQLAYAQVARMSDFGKNDTVFTVRTHLGH 325 FK+ LT+ L ++ +P+ + DG +Y A+ F K D V+T +GH Sbjct: 1869 FKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGH 1928
>Y310_PASMU (Q9CNW3) Hypothetical protein PM0310| Length = 81 Score = 29.6 bits (65), Expect = 5.0 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = -3 Query: 241 VPRSINGDLR*LWLNIKHHVLHELLASQSGLEVVHPVLLLLQMVHTQSEGVKQR 80 V ++G R W N H ++H + GLE+ H LQ+VH + +G++ + Sbjct: 26 VHHRVDGLERPHWSNFAHGIVHHRV---DGLEIPHIQPYYLQLVHHRVDGLESK 76
>URE1_BRAJA (Q89UG0) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit) Length = 572 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Frame = +2 Query: 116 LEEKKYRVYNFKAALTSKQLVQYMV---LDIEPESPEITIDGSRYQLAYAQVARMS 274 +E+K Y V N + ++ K ++ ++++PE+ E+ DG A A+V M+ Sbjct: 511 IEKKLYAVQNTRGRISKKSMIHNDATPNIEVDPETYEVRADGELLTCAPAEVLPMA 566
>NEK1_CAEEL (P84199) Serine/threonine-protein kinase D1044.8 (EC 2.7.11.1)| Length = 959 Score = 29.6 bits (65), Expect = 5.0 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%) Frame = +2 Query: 122 EKKYRVYNFKAALTSKQLVQYMVLDIEPESPEITIDGSRYQLAYAQVARMSDF------- 280 EK V N+ + LT + M ++ E+ EI D V + ++ Sbjct: 379 EKFVDVGNYNSVLTDYDQIAKMYDNLIEENIEIMKDWETVNERRQAVGEVGEYELLDQLG 438 Query: 281 -GKNDTVFTVRTHL-GHRLNPGDLALGYDLYGANMNDDDMDKA 403 G V+TVR H NP L +++ N+ND + DK+ Sbjct: 439 AGAFGCVYTVRKKAQSHSENPAKLLALKEIFMTNLNDRESDKS 481
>YADG_ECOLI (P36879) Hypothetical ABC transporter ATP-binding protein yadG| Length = 308 Score = 28.9 bits (63), Expect = 8.5 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 16/92 (17%) Frame = +2 Query: 95 LTLRVHHLEEKKYRVYNF-------------KAALTSKQLVQYMVLDIEPESPEITIDGS 235 + L H+LEE + N AL +K + +LD+ P+SP +DG Sbjct: 189 IILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDLAPKSPLPKLDGY 248 Query: 236 RYQL---AYAQVARMSDFGKNDTVFTVRTHLG 322 +Y+L A +V + + G N +VFT + G Sbjct: 249 QYRLVDTATLEVEVLREQGIN-SVFTQLSEQG 279 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,352,198 Number of Sequences: 219361 Number of extensions: 1359063 Number of successful extensions: 4068 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3942 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4064 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
