| Clone Name | bags31e13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197857.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0003O19.24), mRNA Length = 2136 Score = 367 bits (185), Expect = 2e-98 Identities = 380/445 (85%) Strand = Plus / Plus Query: 48 tcgtcctctgcaccaaggtcaccaatgccattgcgctgcttgaccccctcactctgcgtg 107 |||||||||||| |||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct: 1412 tcgtcctctgcatcaaggtcaccaatgccatcgctctgcttgaccccctcaccctgcgtg 1471 Query: 108 tgcaccatctggaggagaagaagtacagggtgtacaacttcaaggccgctctgactagca 167 ||||||| || ||||| |||||||||||||| |||||||||||||| ||||| || |||| Sbjct: 1472 tgcaccacctcgaggaaaagaagtacagggtctacaacttcaaggctgctctcaccagca 1531 Query: 168 agcagctcgtgcagtacatggtgcttgatattgagccagagtcacctgagatcaccattg 227 |||||||||| ||||||| ||||| || || |||| |||||||| ||||| ||||||| Sbjct: 1532 agcagctcgtcgagtacatcgtgctagacatcgagcacgagtcaccagagattaccattg 1591 Query: 228 atggatctcggtaccagctggcatatgcgcaggttgcccggatgtctgattttgggaaaa 287 | |||||||| |||||| |||| ||||| ||||| |||||| | || || |||||||||| Sbjct: 1592 acggatctcgctaccagttggcttatgcccaggtcgcccgggtctccgactttgggaaaa 1651 Query: 288 atgatactgtgtttacagtacgaactcatcttgggcaccgtctgaaccctggggaccttg 347 | || || |||| || || || ||||||||||| |||| ||||| ||||| ||||||| Sbjct: 1652 acgacaccatgttcaccgtgcggactcatcttggccacctgctgaatcctggagaccttg 1711 Query: 348 cccttgggtatgatctctacggtgccaacatgaatgatgatgatatggacaaggctttat 407 |||||||||||||||| || ||||||||| ||||||||||||| ||||||| ||| | Sbjct: 1712 cccttgggtatgatctttatggtgccaacttgaatgatgatgacatggacacagctatga 1771 Query: 408 tacgccagaatttgcctgaagtgattcttgtcaagaagagctatgagaagaggcgacgca 467 | ||||| | | |||||||||| |||||||| |||||||||| | ||||||| ||||| Sbjct: 1772 tgcgccacagtctgcctgaagtcattcttgttaagaagagcttcgccaagaggccacgca 1831 Query: 468 cacgcagatggaagctgaagaggct 492 ||||| ||||||||||||||||||| Sbjct: 1832 cacgccgatggaagctgaagaggct 1856
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 367 bits (185), Expect = 2e-98 Identities = 380/445 (85%) Strand = Plus / Minus Query: 48 tcgtcctctgcaccaaggtcaccaatgccattgcgctgcttgaccccctcactctgcgtg 107 |||||||||||| |||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct: 22263484 tcgtcctctgcatcaaggtcaccaatgccatcgctctgcttgaccccctcaccctgcgtg 22263425 Query: 108 tgcaccatctggaggagaagaagtacagggtgtacaacttcaaggccgctctgactagca 167 ||||||| || ||||| |||||||||||||| |||||||||||||| ||||| || |||| Sbjct: 22263424 tgcaccacctcgaggaaaagaagtacagggtctacaacttcaaggctgctctcaccagca 22263365 Query: 168 agcagctcgtgcagtacatggtgcttgatattgagccagagtcacctgagatcaccattg 227 |||||||||| ||||||| ||||| || || |||| |||||||| ||||| ||||||| Sbjct: 22263364 agcagctcgtcgagtacatcgtgctagacatcgagcacgagtcaccagagattaccattg 22263305 Query: 228 atggatctcggtaccagctggcatatgcgcaggttgcccggatgtctgattttgggaaaa 287 | |||||||| |||||| |||| ||||| ||||| |||||| | || || |||||||||| Sbjct: 22263304 acggatctcgctaccagttggcttatgcccaggtcgcccgggtctccgactttgggaaaa 22263245 Query: 288 atgatactgtgtttacagtacgaactcatcttgggcaccgtctgaaccctggggaccttg 347 | || || |||| || || || ||||||||||| |||| ||||| ||||| ||||||| Sbjct: 22263244 acgacaccatgttcaccgtgcggactcatcttggccacctgctgaatcctggagaccttg 22263185 Query: 348 cccttgggtatgatctctacggtgccaacatgaatgatgatgatatggacaaggctttat 407 |||||||||||||||| || ||||||||| ||||||||||||| ||||||| ||| | Sbjct: 22263184 cccttgggtatgatctttatggtgccaacttgaatgatgatgacatggacacagctatga 22263125 Query: 408 tacgccagaatttgcctgaagtgattcttgtcaagaagagctatgagaagaggcgacgca 467 | ||||| | | |||||||||| |||||||| |||||||||| | ||||||| ||||| Sbjct: 22263124 tgcgccacagtctgcctgaagtcattcttgttaagaagagcttcgccaagaggccacgca 22263065 Query: 468 cacgcagatggaagctgaagaggct 492 ||||| ||||||||||||||||||| Sbjct: 22263064 cacgccgatggaagctgaagaggct 22263040
>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence Length = 172427 Score = 367 bits (185), Expect = 2e-98 Identities = 380/445 (85%) Strand = Plus / Minus Query: 48 tcgtcctctgcaccaaggtcaccaatgccattgcgctgcttgaccccctcactctgcgtg 107 |||||||||||| |||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct: 80727 tcgtcctctgcatcaaggtcaccaatgccatcgctctgcttgaccccctcaccctgcgtg 80668 Query: 108 tgcaccatctggaggagaagaagtacagggtgtacaacttcaaggccgctctgactagca 167 ||||||| || ||||| |||||||||||||| |||||||||||||| ||||| || |||| Sbjct: 80667 tgcaccacctcgaggaaaagaagtacagggtctacaacttcaaggctgctctcaccagca 80608 Query: 168 agcagctcgtgcagtacatggtgcttgatattgagccagagtcacctgagatcaccattg 227 |||||||||| ||||||| ||||| || || |||| |||||||| ||||| ||||||| Sbjct: 80607 agcagctcgtcgagtacatcgtgctagacatcgagcacgagtcaccagagattaccattg 80548 Query: 228 atggatctcggtaccagctggcatatgcgcaggttgcccggatgtctgattttgggaaaa 287 | |||||||| |||||| |||| ||||| ||||| |||||| | || || |||||||||| Sbjct: 80547 acggatctcgctaccagttggcttatgcccaggtcgcccgggtctccgactttgggaaaa 80488 Query: 288 atgatactgtgtttacagtacgaactcatcttgggcaccgtctgaaccctggggaccttg 347 | || || |||| || || || ||||||||||| |||| ||||| ||||| ||||||| Sbjct: 80487 acgacaccatgttcaccgtgcggactcatcttggccacctgctgaatcctggagaccttg 80428 Query: 348 cccttgggtatgatctctacggtgccaacatgaatgatgatgatatggacaaggctttat 407 |||||||||||||||| || ||||||||| ||||||||||||| ||||||| ||| | Sbjct: 80427 cccttgggtatgatctttatggtgccaacttgaatgatgatgacatggacacagctatga 80368 Query: 408 tacgccagaatttgcctgaagtgattcttgtcaagaagagctatgagaagaggcgacgca 467 | ||||| | | |||||||||| |||||||| |||||||||| | ||||||| ||||| Sbjct: 80367 tgcgccacagtctgcctgaagtcattcttgttaagaagagcttcgccaagaggccacgca 80308 Query: 468 cacgcagatggaagctgaagaggct 492 ||||| ||||||||||||||||||| Sbjct: 80307 cacgccgatggaagctgaagaggct 80283
>dbj|AK060642.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F06, full insert sequence Length = 1620 Score = 367 bits (185), Expect = 2e-98 Identities = 380/445 (85%) Strand = Plus / Plus Query: 48 tcgtcctctgcaccaaggtcaccaatgccattgcgctgcttgaccccctcactctgcgtg 107 |||||||||||| |||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct: 884 tcgtcctctgcatcaaggtcaccaatgccatcgctctgcttgaccccctcaccctgcgtg 943 Query: 108 tgcaccatctggaggagaagaagtacagggtgtacaacttcaaggccgctctgactagca 167 ||||||| || ||||| |||||||||||||| |||||||||||||| ||||| || |||| Sbjct: 944 tgcaccacctcgaggaaaagaagtacagggtctacaacttcaaggctgctctcaccagca 1003 Query: 168 agcagctcgtgcagtacatggtgcttgatattgagccagagtcacctgagatcaccattg 227 |||||||||| ||||||| ||||| || || |||| |||||||| ||||| ||||||| Sbjct: 1004 agcagctcgtcgagtacatcgtgctagacatcgagcacgagtcaccagagattaccattg 1063 Query: 228 atggatctcggtaccagctggcatatgcgcaggttgcccggatgtctgattttgggaaaa 287 | |||||||| |||||| |||| ||||| ||||| |||||| | || || |||||||||| Sbjct: 1064 acggatctcgctaccagttggcttatgcccaggtcgcccgggtctccgactttgggaaaa 1123 Query: 288 atgatactgtgtttacagtacgaactcatcttgggcaccgtctgaaccctggggaccttg 347 | || || |||| || || || ||||||||||| |||| ||||| ||||| ||||||| Sbjct: 1124 acgacaccatgttcaccgtgcggactcatcttggccacctgctgaatcctggagaccttg 1183 Query: 348 cccttgggtatgatctctacggtgccaacatgaatgatgatgatatggacaaggctttat 407 |||||||||||||||| || ||||||||| ||||||||||||| ||||||| ||| | Sbjct: 1184 cccttgggtatgatctttatggtgccaacttgaatgatgatgacatggacacagctatga 1243 Query: 408 tacgccagaatttgcctgaagtgattcttgtcaagaagagctatgagaagaggcgacgca 467 | ||||| | | |||||||||| |||||||| |||||||||| | ||||||| ||||| Sbjct: 1244 tgcgccacagtctgcctgaagtcattcttgttaagaagagcttcgccaagaggccacgca 1303 Query: 468 cacgcagatggaagctgaagaggct 492 ||||| ||||||||||||||||||| Sbjct: 1304 cacgccgatggaagctgaagaggct 1328
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 367 bits (185), Expect = 2e-98 Identities = 380/445 (85%) Strand = Plus / Minus Query: 48 tcgtcctctgcaccaaggtcaccaatgccattgcgctgcttgaccccctcactctgcgtg 107 |||||||||||| |||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct: 22275552 tcgtcctctgcatcaaggtcaccaatgccatcgctctgcttgaccccctcaccctgcgtg 22275493 Query: 108 tgcaccatctggaggagaagaagtacagggtgtacaacttcaaggccgctctgactagca 167 ||||||| || ||||| |||||||||||||| |||||||||||||| ||||| || |||| Sbjct: 22275492 tgcaccacctcgaggaaaagaagtacagggtctacaacttcaaggctgctctcaccagca 22275433 Query: 168 agcagctcgtgcagtacatggtgcttgatattgagccagagtcacctgagatcaccattg 227 |||||||||| ||||||| ||||| || || |||| |||||||| ||||| ||||||| Sbjct: 22275432 agcagctcgtcgagtacatcgtgctagacatcgagcacgagtcaccagagattaccattg 22275373 Query: 228 atggatctcggtaccagctggcatatgcgcaggttgcccggatgtctgattttgggaaaa 287 | |||||||| |||||| |||| ||||| ||||| |||||| | || || |||||||||| Sbjct: 22275372 acggatctcgctaccagttggcttatgcccaggtcgcccgggtctccgactttgggaaaa 22275313 Query: 288 atgatactgtgtttacagtacgaactcatcttgggcaccgtctgaaccctggggaccttg 347 | || || |||| || || || ||||||||||| |||| ||||| ||||| ||||||| Sbjct: 22275312 acgacaccatgttcaccgtgcggactcatcttggccacctgctgaatcctggagaccttg 22275253 Query: 348 cccttgggtatgatctctacggtgccaacatgaatgatgatgatatggacaaggctttat 407 |||||||||||||||| || ||||||||| ||||||||||||| ||||||| ||| | Sbjct: 22275252 cccttgggtatgatctttatggtgccaacttgaatgatgatgacatggacacagctatga 22275193 Query: 408 tacgccagaatttgcctgaagtgattcttgtcaagaagagctatgagaagaggcgacgca 467 | ||||| | | |||||||||| |||||||| |||||||||| | ||||||| ||||| Sbjct: 22275192 tgcgccacagtctgcctgaagtcattcttgttaagaagagcttcgccaagaggccacgca 22275133 Query: 468 cacgcagatggaagctgaagaggct 492 ||||| ||||||||||||||||||| Sbjct: 22275132 cacgccgatggaagctgaagaggct 22275108
>dbj|AK101216.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031B21, full insert sequence Length = 2004 Score = 343 bits (173), Expect = 3e-91 Identities = 378/445 (84%), Gaps = 1/445 (0%) Strand = Plus / Plus Query: 48 tcgtcctctgcaccaaggtcaccaatgccattgcgctgcttgaccccctcactctgcgtg 107 |||||||||||| |||||||||||||||||| || ||||||||||||||||| ||||| Sbjct: 895 tcgtcctctgcatcaaggtcaccaatgccatcgctctgcttgaccccctcaccctgcgc- 953 Query: 108 tgcaccatctggaggagaagaagtacagggtgtacaacttcaaggccgctctgactagca 167 ||||||| || ||||| |||||||||||||| |||||||||||||| ||||| || |||| Sbjct: 954 tgcaccacctcgaggaaaagaagtacagggtctacaacttcaaggctgctctcaccagca 1013 Query: 168 agcagctcgtgcagtacatggtgcttgatattgagccagagtcacctgagatcaccattg 227 |||||||||| ||||||| ||||| || || |||| |||||||| ||||| ||||||| Sbjct: 1014 agcagctcgtcgagtacatcgtgctagacatcgagcacgagtcaccagagattaccattg 1073 Query: 228 atggatctcggtaccagctggcatatgcgcaggttgcccggatgtctgattttgggaaaa 287 | |||||||| |||||| |||| ||||| ||||| |||||| | || || |||||||||| Sbjct: 1074 acggatctcgctaccagttggcttatgcccaggtcgcccgggtctccgactttgggaaaa 1133 Query: 288 atgatactgtgtttacagtacgaactcatcttgggcaccgtctgaaccctggggaccttg 347 | || || |||| || || || ||||||||||| |||| ||||| ||||| ||||||| Sbjct: 1134 acgacaccatgttcaccgtgcggactcatcttggccacctgctgaatcctggagaccttg 1193 Query: 348 cccttgggtatgatctctacggtgccaacatgaatgatgatgatatggacaaggctttat 407 |||||||||||||||| || ||||||||| ||||||||||||| ||||||| ||| | Sbjct: 1194 cccttgggtatgatctttatggtgccaacttgaatgatgatgacatggacacagctatga 1253 Query: 408 tacgccagaatttgcctgaagtgattcttgtcaagaagagctatgagaagaggcgacgca 467 | ||||| | | |||||||||| |||||||| |||||||||| | ||||||| ||||| Sbjct: 1254 tgcgccacagtctgcctgaagtcattcttgttaagaagagcttcgccaagaggccacgca 1313 Query: 468 cacgcagatggaagctgaagaggct 492 ||||| ||||||||||||||||||| Sbjct: 1314 cacgccgatggaagctgaagaggct 1338
>dbj|AK073206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033004L13, full insert sequence Length = 1460 Score = 270 bits (136), Expect = 4e-69 Identities = 310/368 (84%) Strand = Plus / Plus Query: 125 aagaagtacagggtgtacaacttcaaggccgctctgactagcaagcagctcgtgcagtac 184 |||||||||||||| |||||||||||||| ||||| || |||||||||||||| ||||| Sbjct: 4 aagaagtacagggtctacaacttcaaggctgctctcaccagcaagcagctcgtcgagtac 63 Query: 185 atggtgcttgatattgagccagagtcacctgagatcaccattgatggatctcggtaccag 244 || ||||| || || |||| |||||||| ||||| |||||||| |||||||| |||||| Sbjct: 64 atcgtgctagacatcgagcacgagtcaccagagattaccattgacggatctcgctaccag 123 Query: 245 ctggcatatgcgcaggttgcccggatgtctgattttgggaaaaatgatactgtgtttaca 304 |||| ||||| ||||| |||||| | || || ||||||||||| || || |||| || Sbjct: 124 ttggcttatgcccaggtcgcccgggtctccgactttgggaaaaacgacaccatgttcacc 183 Query: 305 gtacgaactcatcttgggcaccgtctgaaccctggggaccttgcccttgggtatgatctc 364 || || ||||||||||| |||| ||||| ||||| ||||||||||||||||||||||| Sbjct: 184 gtgcggactcatcttggccacctgctgaatcctggagaccttgcccttgggtatgatctt 243 Query: 365 tacggtgccaacatgaatgatgatgatatggacaaggctttattacgccagaatttgcct 424 || ||||||||| ||||||||||||| ||||||| ||| | | ||||| | | ||||| Sbjct: 244 tatggtgccaacttgaatgatgatgacatggacacagctatgatgcgccacagtctgcct 303 Query: 425 gaagtgattcttgtcaagaagagctatgagaagaggcgacgcacacgcagatggaagctg 484 ||||| |||||||| |||||||||| | ||||||| |||||||||| ||||||||||| Sbjct: 304 gaagtcattcttgttaagaagagcttcgccaagaggccacgcacacgccgatggaagctg 363 Query: 485 aagaggct 492 |||||||| Sbjct: 364 aagaggct 371
>gb|AY109670.1| Zea mays CL52253_1 mRNA sequence Length = 1069 Score = 170 bits (86), Expect = 3e-39 Identities = 215/260 (82%) Strand = Plus / Minus Query: 32 ggtgggctaggcccgctcgtcctctgcaccaaggtcaccaatgccattgcgctgcttgac 91 ||||| || ||||||||||| ||||| ||||||||| ||||||||||| || ||||| Sbjct: 950 ggtggccttggcccgctcgtgctctgtgtcaaggtcacaaatgccattgctcttcttgat 891 Query: 92 cccctcactctgcgtgtgcaccatctggaggagaagaagtacagggtgtacaacttcaag 151 ||||| || ||||| |||||||| ||||||||| |||||||| || || || || Sbjct: 890 cccctaacgctgcgagtgcaccacctggaggagnnnnnntacagggtttataattttaaa 831 Query: 152 gccgctctgactagcaagcagctcgtgcagtacatggtgcttgatattgagccagagtca 211 || ||||| || ||||||||||||||| ||||||| |||||||| ||||| ||||| || Sbjct: 830 gcagctctcaccagcaagcagctcgtggagtacattgtgcttgacattgaaccagaatcg 771 Query: 212 cctgagatcaccattgatggatctcggtaccagctggcatatgcgcaggttgcccggatg 271 ||||| || ||| ||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct: 770 cctgaaatttgcatcgatgggtctcggtaccagttggcttatgcgcaggttgcccggatg 711 Query: 272 tctgattttgggaaaaatga 291 || ||||| ||||| ||||| Sbjct: 710 tcagatttcgggaagaatga 691 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 422 cctgaagtgattcttgtcaagaagagctatgagaagaggcgacgcacacgcagatggaag 481 ||||| ||| |||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 560 cctgaggtggttcttgtcaagaagagctatgagaagaggcctcgcacacggcgatggaag 501 Query: 482 ctgaagaggctgcctgttgaggaaga 507 || |||||| |||| || |||||||| Sbjct: 500 cttaagaggttgccggtggaggaaga 475
>ref|XM_329527.1| Neurospora crassa OR74A hypothetical protein ( hypothetical protein B9J10.310 [imported] - Neurospora crassa OR74A ) (NCU08483.1) partial mRNA Length = 372 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 381 atgatgatgatatggacaaggcttta 406 |||||||||| ||||||||||||||| Sbjct: 179 atgatgatgaaatggacaaggcttta 204
>ref|XM_958061.1| Neurospora crassa OR74A hypothetical protein ( hypothetical protein B9J10.310 [imported] - Neurospora crassa OR74A ) (NCU08483.1) partial mRNA Length = 372 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 381 atgatgatgatatggacaaggcttta 406 |||||||||| ||||||||||||||| Sbjct: 179 atgatgatgaaatggacaaggcttta 204
>emb|AL356324.1|NCB9J10 Neurospora crassa DNA linkage group II BAC clone B9J10 Length = 66924 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 381 atgatgatgatatggacaaggcttta 406 |||||||||| ||||||||||||||| Sbjct: 58651 atgatgatgaaatggacaaggcttta 58676
>gb|AC131099.4| Mus musculus BAC clone RP23-15N12 from chromosome 13, complete sequence Length = 208298 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 477 ggaagctgaagaggctgcctg 497 ||||||||||||||||||||| Sbjct: 23672 ggaagctgaagaggctgcctg 23652
>gb|AC105407.5| Mus musculus BAC clone RP24-196J17 from 13, complete sequence Length = 175889 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 gctgcttgaccccctcactct 102 ||||||||||||||||||||| Sbjct: 77527 gctgcttgaccccctcactct 77507
>gb|AC154454.2| Mus musculus BAC clone RP24-173H15 from chromosome 13, complete sequence Length = 181147 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 gctgcttgaccccctcactct 102 ||||||||||||||||||||| Sbjct: 176286 gctgcttgaccccctcactct 176306
>gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, complete sequence Length = 163597 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 53 ctctgcaccaaggtcaccaatgcca 77 |||| |||||||||||||||||||| Sbjct: 62977 ctctccaccaaggtcaccaatgcca 63001
>gb|AC121895.3| Mus musculus BAC clone RP24-157P5 from chromosome 2, complete sequence Length = 171557 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 aatttgcctgaagtgattct 435 |||||||||||||||||||| Sbjct: 59142 aatttgcctgaagtgattct 59161
>ref|XM_846833.1| PREDICTED: Canis familiaris similar to ash1 (absent, small, or homeotic)-like, transcript variant 2 (LOC480128), mRNA Length = 9298 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 ctcggtaccagctggcatat 253 |||||||||||||||||||| Sbjct: 7153 ctcggtaccagctggcatat 7134
>ref|XM_537251.2| PREDICTED: Canis familiaris similar to ash1 (absent, small, or homeotic)-like, transcript variant 1 (LOC480128), mRNA Length = 9271 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 ctcggtaccagctggcatat 253 |||||||||||||||||||| Sbjct: 7126 ctcggtaccagctggcatat 7107
>gb|AY349087.1| Rhizophlyctis harderi ATCC 24053 28S large subunit ribosomal RNA gene, partial sequence Length = 774 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 tactgtgtttacagtacgaa 311 |||||||||||||||||||| Sbjct: 37 tactgtgtttacagtacgaa 56
>dbj|AB228651.1| Aspergillus oryzae cDNA, contig sequence: AoEST5524 Length = 216 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ctgcttgaccccctcactct 102 |||||||||||||||||||| Sbjct: 63 ctgcttgaccccctcactct 44
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ctgcttgaccccctcactct 102 |||||||||||||||||||| Sbjct: 1504476 ctgcttgaccccctcactct 1504457
>emb|CR389529.1| Gallus gallus finished cDNA, clone ChEST297k10 Length = 851 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 gaggctgcctgttgaggaag 506 |||||||||||||||||||| Sbjct: 635 gaggctgcctgttgaggaag 654
>gb|AY260492.1| Mastomys hildebrandtii SmcX protein gene, partial cds Length = 1247 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 466 cacacgcagatggaagctgaagaggctg 493 ||||||||||| ||||||| |||||||| Sbjct: 299 cacacgcagatagaagctgtagaggctg 272
>gb|AY260491.1| Hylomyscus alleni SmcX protein gene, partial cds Length = 1255 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 466 cacacgcagatggaagctgaagaggctg 493 ||||||||||| ||||||| |||||||| Sbjct: 299 cacacgcagatagaagctgtagaggctg 272
>emb|BX294115.7| Mouse DNA sequence from clone RP24-465I11 on chromosome 2, complete sequence Length = 15018 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 aatttgcctgaagtgattct 435 |||||||||||||||||||| Sbjct: 9564 aatttgcctgaagtgattct 9583
>emb|BX005279.12| Mouse DNA sequence from clone RP23-321B15 on chromosome X, complete sequence Length = 222627 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 aaaatgatactgtgtttaca 304 |||||||||||||||||||| Sbjct: 26401 aaaatgatactgtgtttaca 26420
>emb|AL929508.6| Zebrafish DNA sequence from clone CH211-158G13, complete sequence Length = 180029 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 caacatgaatgatgatgata 392 |||||||||||||||||||| Sbjct: 12129 caacatgaatgatgatgata 12110
>emb|AL645861.12| Mouse DNA sequence from clone RP23-184G6 on chromosome 11, complete sequence Length = 212385 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 ctctgcgtgtgcaccatctggagg 122 ||||||||||| |||||||||||| Sbjct: 34790 ctctgcgtgtgtaccatctggagg 34767 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,254,844 Number of Sequences: 3902068 Number of extensions: 4254844 Number of successful extensions: 81461 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81356 Number of HSP's gapped (non-prelim): 97 length of query: 510 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 488 effective length of database: 17,147,199,772 effective search space: 8367833488736 effective search space used: 8367833488736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)