Clone Information

BLAST Search Result

Clone Name	bags30p02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3	214	2e-55
2	PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neura...	109	5e-24
3	PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Bra...	109	5e-24
4	PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neu...	109	5e-24
5	PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB) ...	107	3e-23
6	ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)	107	3e-23
7	PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB) ...	106	4e-23
8	ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)	106	4e-23
9	PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)	106	4e-23
10	PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB...	106	4e-23
11	ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)	106	5e-23
12	PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB...	106	5e-23
13	PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2	95	2e-19
14	PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1	91	2e-18
15	HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like	87	3e-17
16	HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (...	86	9e-17
17	HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (...	86	9e-17
18	HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-l...	85	2e-16
19	MATR3_MOUSE (Q8K310) Matrin-3	49	9e-06
20	MATR3_HUMAN (P43243) Matrin-3	49	9e-06
21	MATR3_RAT (P43244) Matrin-3 (Nuclear scaffold protein P130/MAT3)	49	9e-06
22	IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 s...	37	0.028
23	IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 s...	37	0.028
24	PTPA1_ASPFU (Q4WMU5) Serine/threonine-protein phosphatase 2A act...	37	0.028
25	SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)	37	0.028
26	ZN638_MOUSE (Q61464) Zinc finger protein 638 (Nuclear protein 22...	36	0.063
27	ZN638_HUMAN (Q14966) Zinc finger protein 638 (Nuclear protein 22...	34	0.24
28	NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Mul...	34	0.31
29	TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-d...	32	0.92
30	FOXH1_HUMAN (O75593) Forkhead box protein H1 (Forkhead activin s...	32	1.2
31	GCSP_ANASP (Q8YNF9) Glycine dehydrogenase [decarboxylating] (EC ...	32	1.6
32	MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote...	32	1.6
33	SPEN_DROME (Q8SX83) Protein split ends	32	1.6
34	PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein	32	1.6
35	CENG3_HUMAN (Q96P47) Centaurin-gamma 3 (ARF-GAP with GTP-binding...	31	2.0
36	MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote...	31	2.0
37	SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precurs...	31	2.7
38	PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein	31	2.7
39	RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p...	31	2.7
40	SYN1_RAT (P09951) Synapsin-1 (Synapsin I)	30	4.5
41	IF2_STRAW (Q82K53) Translation initiation factor IF-2	30	4.5
42	SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)	30	4.5
43	SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)	30	4.5
44	3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)	30	5.9
45	SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)	29	7.8
46	UCRI3_TOBAC (P51133) Ubiquinol-cytochrome c reductase iron-sulfu...	29	7.8

>PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3|
          Length = 432

 Score =  214 bits (544), Expect = 2e-55
 Identities = 100/140 (71%), Positives = 127/140 (90%), Gaps = 1/140 (0%)
 Frame = +3

Query: 135 MAEPSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQY 314
           MAE S+V+H+RNVGHEISE DLLQ+ QPFG + K+VMLRAKNQAL+QM+D+SS++SA+Q+
Sbjct: 1   MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60

Query: 315 YTTIQPSVRGRNVYLQYSSHQELNT-DQSSHGRNPDQDEPNRILLVTVHHMLYPMTVEVL 491
           +T +QP++RGRNVY+Q+SSHQEL T +Q+ HGR   +DEPNRILLVT+HHMLYP+TV+VL
Sbjct: 61  FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGR---EDEPNRILLVTIHHMLYPITVDVL 117

Query: 492 HQVFSPYGFVEKIVTFQKDS 551
           HQVFSPYGFVEK+VTFQK +
Sbjct: 118 HQVFSPYGFVEKLVTFQKSA 137



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
 Frame = +3

Query: 24  FSIRPSLSPFLPLV*TLDXXXXXXXXSRRRVAVSGARMAEPSRVIHIRNVGHEISETDLL 203
           FS  P+++P      + D          R  A +      P+++IH+  +  +++E +++
Sbjct: 316 FSKHPNITPGTD---SHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVM 372

Query: 204 QVVQPFGAV--AKVVMLRAKNQALVQMEDLSSSISAI 308
             VQ  GAV   KV  +  K QALVQ E+   +  A+
Sbjct: 373 NHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEAL 409

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>PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neural|
           polypyrimidine tract-binding protein) (PTB-like protein)
          Length = 531

 Score =  109 bits (273), Expect = 5e-24
 Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 28/164 (17%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 323
           PSRV+HIR +  E++ET+++ +  PFG V  ++ML+ KNQA +++    ++I+ + YY+ 
Sbjct: 57  PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116

Query: 324 IQPSVRGRNVYLQYSSHQELNTDQSSHGR----------------------------NPD 419
           + P +R + +Y+QYS+H+EL TD + + R                             P 
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPA 176

Query: 420 QDEPNRILLVTVHHMLYPMTVEVLHQVFSPYGFVEKIVTFQKDS 551
           Q     +L + + +M YP+T++VLHQ+FS +G V KI+TF K++
Sbjct: 177 QSP---VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNN 217

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>PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Brain-enriched|
           polypyrimidine tract-binding protein) (Brain-enriched
           PTB) (RRM-type RNA-binding protein brPTB) (Neural
           polypyrimidine tract-binding protein)
          Length = 531

 Score =  109 bits (273), Expect = 5e-24
 Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 28/164 (17%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 323
           PSRV+HIR +  E++ET+++ +  PFG V  ++ML+ KNQA +++    ++I+ + YY+ 
Sbjct: 57  PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116

Query: 324 IQPSVRGRNVYLQYSSHQELNTDQSSHGR----------------------------NPD 419
           + P +R + +Y+QYS+H+EL TD + + R                             P 
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPA 176

Query: 420 QDEPNRILLVTVHHMLYPMTVEVLHQVFSPYGFVEKIVTFQKDS 551
           Q     +L + + +M YP+T++VLHQ+FS +G V KI+TF K++
Sbjct: 177 QSP---VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNN 217

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>PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neurally-enriched|
           homolog of PTB) (Neural polypyrimidine tract-binding
           protein) (PTB-like protein)
          Length = 531

 Score =  109 bits (273), Expect = 5e-24
 Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 28/164 (17%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 323
           PSRV+HIR +  E++ET+++ +  PFG V  ++ML+ KNQA +++    ++I+ + YY+ 
Sbjct: 57  PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 116

Query: 324 IQPSVRGRNVYLQYSSHQELNTDQSSHGR----------------------------NPD 419
           + P +R + +Y+QYS+H+EL TD + + R                             P 
Sbjct: 117 VTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPA 176

Query: 420 QDEPNRILLVTVHHMLYPMTVEVLHQVFSPYGFVEKIVTFQKDS 551
           Q     +L + + +M YP+T++VLHQ+FS +G V KI+TF K++
Sbjct: 177 QSP---VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNN 217

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>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 557

 Score =  107 bits (266), Expect = 3e-23
 Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 28/164 (17%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 323
           PSRVIHIR +  +++E +++ +  PFG V  ++ML+ KNQA ++M    ++ + + YYT+
Sbjct: 57  PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116

Query: 324 IQPSVRGRNVYLQYSSHQELNTDQSSHGRNPD---------------------------- 419
           + P +RG+ +Y+Q+S+H+EL TD S +                                 
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176

Query: 420 QDEPNRILLVTVHHMLYPMTVEVLHQVFSPYGFVEKIVTFQKDS 551
               + +L + V ++ YP+T++VLHQ+FS +G V KI+TF K++
Sbjct: 177 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN 220



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQ--ALVQMEDLSSSISAI 308
           PS  +H+ N+   ISE DL  +    G + K      K++  AL+QM  +  +I A+
Sbjct: 478 PSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQAL 534

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>ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)|
          Length = 521

 Score =  107 bits (266), Expect = 3e-23
 Identities = 54/164 (32%), Positives = 93/164 (56%), Gaps = 28/164 (17%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 323
           PSRV+H+R +  +++E +++ +  PFG V  ++ML+ K+QA ++M    ++++ + YYT 
Sbjct: 26  PSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTP 85

Query: 324 IQPSVRGRNVYLQYSSHQELNTDQ----------------------------SSHGRNPD 419
           I P +R + VY+QYS+H+EL TD                             S+ G    
Sbjct: 86  ITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLP 145

Query: 420 QDEPNRILLVTVHHMLYPMTVEVLHQVFSPYGFVEKIVTFQKDS 551
              P  +L + + ++ YP+T+EVLHQ+FS +G V KI+TF K++
Sbjct: 146 GQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 187

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>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (Pyrimidine-binding protein) (PYBP)
          Length = 555

 Score =  106 bits (265), Expect = 4e-23
 Identities = 52/164 (31%), Positives = 93/164 (56%), Gaps = 28/164 (17%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 323
           PSRVIH+R +  +++E +++ +  PFG V  ++ML+ KNQA ++M    ++ + + YYT+
Sbjct: 56  PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTS 115

Query: 324 IQPSVRGRNVYLQYSSHQELNTDQSSHGRNPD---------------------------- 419
           + P +RG+ +Y+Q+S+H+EL TD S +                                 
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 175

Query: 420 QDEPNRILLVTVHHMLYPMTVEVLHQVFSPYGFVEKIVTFQKDS 551
               + +L + V ++ YP+T++VLHQ+FS +G V KI+TF K++
Sbjct: 176 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN 219



 Score = 32.0 bits (71), Expect = 1.2
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQ--ALVQMEDLSSSISAI 308
           PS  +H+ N+   +SE DL  +    G V K      K++  AL+QM  +  ++ A+
Sbjct: 476 PSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQAL 532

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>ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score =  106 bits (265), Expect = 4e-23
 Identities = 54/162 (33%), Positives = 94/162 (58%), Gaps = 26/162 (16%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 323
           PSRV+H+R +  +++E +++ +  PFG V  ++ML+ K+QA ++M    ++++ I YYT 
Sbjct: 28  PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTP 87

Query: 324 IQPSVRGRNVYLQYSSHQELNTD------------------QSSHGRNPDQDE------- 428
           + P +R + VY+QYS+H+EL TD                  QS +   P           
Sbjct: 88  VTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATSNEGTLLP 147

Query: 429 -PNRILLVTVHHMLYPMTVEVLHQVFSPYGFVEKIVTFQKDS 551
             + +L + + ++ YP+T+EVLHQ+FS +G V KI+TF K++
Sbjct: 148 GQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 189

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>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)|
          Length = 531

 Score =  106 bits (265), Expect = 4e-23
 Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 28/164 (17%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 323
           PSRVIHIR +  +++E +++ +  PFG V  ++ML+ KNQA ++M    ++ + + YYT+
Sbjct: 57  PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTS 116

Query: 324 IQPSVRGRNVYLQYSSHQELNTDQSSHGRNPD---------------------------- 419
           + P +RG+ +Y+Q+S+H+EL TD S +                                 
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176

Query: 420 QDEPNRILLVTVHHMLYPMTVEVLHQVFSPYGFVEKIVTFQKDS 551
               + +L + V ++ YP+T++VLHQ+FS +G V KI+TF K++
Sbjct: 177 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN 220



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQ--ALVQMEDLSSSISAI 308
           PS  +H+ N+   ISE DL  +    G + K      K++  AL+QM  +  +I A+
Sbjct: 452 PSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQAL 508

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>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 527

 Score =  106 bits (265), Expect = 4e-23
 Identities = 54/171 (31%), Positives = 96/171 (56%), Gaps = 35/171 (20%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 323
           PSRVIH+R +  +++E +++ +  PFG V  ++ML+ KNQA ++M    ++ + + YYT+
Sbjct: 56  PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 115

Query: 324 IQPSVRGRNVYLQYSSHQELNTDQSSH--------------------------------- 404
           + P +RG+ +Y+Q+S+H+EL TD S +                                 
Sbjct: 116 VAPVLRGQPIYIQFSNHKELKTDSSPNQVRAQAALQAVNSVQSGNLALAASAAAVDAGMA 175

Query: 405 --GRNPDQDEPNRILLVTVHHMLYPMTVEVLHQVFSPYGFVEKIVTFQKDS 551
             G++P       +L + V ++ YP+T++VLHQ+FS +G V KI+TF K++
Sbjct: 176 MAGQSP-------VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN 219



 Score = 32.0 bits (71), Expect = 1.2
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQ--ALVQMEDLSSSISAI 308
           PS  +H+ N+   +SE DL  +    G V K      K++  AL+QM  +  ++ A+
Sbjct: 448 PSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQAL 504

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>ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score =  106 bits (264), Expect = 5e-23
 Identities = 54/162 (33%), Positives = 94/162 (58%), Gaps = 26/162 (16%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 323
           PSRV+H+R +  +++E +++ +  PFG V  ++ML+ K+QA ++M    ++++ I YYT 
Sbjct: 28  PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTP 87

Query: 324 IQPSVRGRNVYLQYSSHQELNTD------------------QSSHGRNPDQDE------- 428
           + P +R + VY+QYS+H+EL TD                  QS +   P           
Sbjct: 88  VTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLLP 147

Query: 429 -PNRILLVTVHHMLYPMTVEVLHQVFSPYGFVEKIVTFQKDS 551
             + +L + + ++ YP+T+EVLHQ+FS +G V KI+TF K++
Sbjct: 148 GQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 189

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>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (57 kDa RNA-binding protein PPTB-1)
          Length = 531

 Score =  106 bits (264), Expect = 5e-23
 Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 28/164 (17%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTT 323
           PSRVIHIR +  +++E +++ +  PFG V  ++ML+ KNQA ++M    ++ + + YYT+
Sbjct: 57  PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 116

Query: 324 IQPSVRGRNVYLQYSSHQELNTDQSSHGRNPD---------------------------- 419
           + P +RG+ +Y+Q+S+H+EL TD S +                                 
Sbjct: 117 VTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMA 176

Query: 420 QDEPNRILLVTVHHMLYPMTVEVLHQVFSPYGFVEKIVTFQKDS 551
               + +L + V ++ YP+T++VLHQ+FS +G V KI+TF K++
Sbjct: 177 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN 220



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQ--ALVQMEDLSSSISAI 308
           PS  +H+ N+   +SE DL  +    G V K      K++  AL+QM  +  ++ A+
Sbjct: 452 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQAL 508

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>PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2|
          Length = 429

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 56/139 (40%), Positives = 90/139 (64%), Gaps = 5/139 (3%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVA--KVVMLRAKNQALVQMEDLSSSISAIQYY 317
           PS+V+H+RN+  E +E +L+++ +PFG V   K  +   +NQA ++ EDL+ +I  I YY
Sbjct: 16  PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYY 75

Query: 318 -TTIQPS-VRGRNVYLQYSSHQELNTDQSSHGRNPDQDEPNRILLVTVHHMLYPM-TVEV 488
            ++ +P+ VRG+ VYLQYS+ QE+  ++++       D    +LLVT+      M +++V
Sbjct: 76  ASSSEPAQVRGKTVYLQYSNRQEIVNNKTT------ADVVGNVLLVTIEGDDARMVSIDV 129

Query: 489 LHQVFSPYGFVEKIVTFQK 545
           LH VFS +GFV KI TF+K
Sbjct: 130 LHLVFSAFGFVHKITTFEK 148

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>PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1|
          Length = 399

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 52/139 (37%), Positives = 87/139 (62%), Gaps = 5/139 (3%)
 Frame = +3

Query: 144 PSRVIHIRNVGHEISETDLLQVVQPFGAVA--KVVMLRAKNQALVQMEDLSSSISAIQYY 317
           PS+V+H+RN+  E  E +L+ + + FG +   K  +   +NQA V+  DL+ +IS + YY
Sbjct: 15  PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74

Query: 318 -TTIQPS-VRGRNVYLQYSSHQELNTDQSSHGRNPDQDEPNRILLVTVHHM-LYPMTVEV 488
            ++ +P+ +RG+ VY+QYS+  E+  +QS        D P  +LLVT   +  + ++++V
Sbjct: 75  ASSSEPAQIRGKTVYIQYSNRHEIVNNQSPG------DVPGNVLLVTFEGVESHEVSIDV 128

Query: 489 LHQVFSPYGFVEKIVTFQK 545
           +H VFS +GFV KI TF+K
Sbjct: 129 IHLVFSAFGFVHKIATFEK 147



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 37/161 (22%)
 Frame = +3

Query: 177 HEISETDLLQVVQPFGAVAKVVMLR--AKNQALVQMEDLSSSISA--------IQYYTTI 326
           HE+S   +  V   FG V K+      A  QALVQ  D+ ++ +A        I  Y  +
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYL-L 180

Query: 327 QPSVRGRNVYLQYSSHQELNTDQSSHGRNPDQDEP------------------------- 431
              V   ++ + YS+H +LN    SH R+ D   P                         
Sbjct: 181 SAHVGSCSLRMSYSAHTDLNIKFQSH-RSRDYTNPYLPVNQTAMDGSMQPALGADGKKVE 239

Query: 432 --NRILLVTVHHMLYPMTVEVLHQVFSPYGFVEKIVTFQKD 548
             + +LL  + +M Y +TV+VLH VFS YG V+KI  F+K+
Sbjct: 240 SQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKN 280

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>HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like|
          Length = 591

 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 43/138 (31%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
 Frame = +3

Query: 147 SRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTI 326
           S V+H+R +   + E DL++ ++ FG +  V+M+  K QALV+ E++ S+   + +   +
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 183

Query: 327 QPSVRGRNVYLQYSSHQEL----NTDQSSHGRNPDQDEPNRILLVTVHHMLYPMTVEVLH 494
              + G+  +  YS+ + +    NTD  S G        N++LL+++ + LYP+TV+VL+
Sbjct: 184 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGG--------NKVLLLSIQNPLYPITVDVLY 235

Query: 495 QVFSPYGFVEKIVTFQKD 548
            V +P G V++IV F+++
Sbjct: 236 TVCNPVGKVQRIVIFKRN 253

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>HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 558

 Score = 85.5 bits (210), Expect = 9e-17
 Identities = 45/134 (33%), Positives = 80/134 (59%)
 Frame = +3

Query: 147 SRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTI 326
           S V+HIR +   + E DL++ +Q FG ++ VV++  K QALV+ ED+  + +A+ Y    
Sbjct: 70  SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN 129

Query: 327 QPSVRGRNVYLQYSSHQELNTDQSSHGRNPDQDEPNRILLVTVHHMLYPMTVEVLHQVFS 506
           Q  + G   ++ YS+ Q++    S  G + D    N +LL T+ + +Y +T +VL+ + +
Sbjct: 130 QIYIAGHPAFVNYSTSQKI----SRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICN 185

Query: 507 PYGFVEKIVTFQKD 548
           P G V++IV F+K+
Sbjct: 186 PCGPVQRIVIFRKN 199

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>HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 555

 Score = 85.5 bits (210), Expect = 9e-17
 Identities = 45/134 (33%), Positives = 80/134 (59%)
 Frame = +3

Query: 147 SRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTI 326
           S V+HIR +   + E DL++ +Q FG ++ VV++  K QALV+ ED+  + +A+ Y    
Sbjct: 67  SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN 126

Query: 327 QPSVRGRNVYLQYSSHQELNTDQSSHGRNPDQDEPNRILLVTVHHMLYPMTVEVLHQVFS 506
           Q  + G   ++ YS+ Q++    S  G + D    N +LL T+ + +Y +T +VL+ + +
Sbjct: 127 QIYIAGHPAFVNYSTSQKI----SRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICN 182

Query: 507 PYGFVEKIVTFQKD 548
           P G V++IV F+K+
Sbjct: 183 PCGPVQRIVIFRKN 196

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>HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-like (Stromal|
           RNA-regulating factor) (BLOCK24 protein)
          Length = 542

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 43/138 (31%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
 Frame = +3

Query: 147 SRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTI 326
           S V+H+R +   + E DL++ ++ FG +  V+M+  K QALV+ E++ S+   + +    
Sbjct: 75  SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134

Query: 327 QPSVRGRNVYLQYSSHQEL----NTDQSSHGRNPDQDEPNRILLVTVHHMLYPMTVEVLH 494
              + G+  +  YS+ + +    NTD  S G        N++LL+++ + LYP+TV+VL+
Sbjct: 135 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGG--------NKVLLLSIQNPLYPITVDVLY 186

Query: 495 QVFSPYGFVEKIVTFQKD 548
            V +P G V++IV F+++
Sbjct: 187 TVCNPVGKVQRIVIFKRN 204

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>MATR3_MOUSE (Q8K310) Matrin-3|
          Length = 846

 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
 Frame = +3

Query: 141 EPSRVIHIRNVGHEIS-ETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYY 317
           E SRV+HI +     +    LLQ+V+PFG ++  ++L   N+A ++M     + +A+ YY
Sbjct: 395 ETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYY 454

Query: 318 TTIQPSVRGRNVYLQYSSHQELNTDQSSHGRNPDQ-----DEPNRIL-LVTVHHMLYPMT 479
           TT    V G+ V +  S  Q+    +   G+ PDQ      E  R++ L  + H  Y  +
Sbjct: 455 TTTPALVFGKPVRVHLS--QKYKRIKKPEGK-PDQKFDQKQELGRVIHLSNLPHSGY--S 509

Query: 480 VEVLHQVFSPYGFVEKIVTFQKDS 551
              + ++  PYG ++  +  +  S
Sbjct: 510 DSAVLKLAEPYGKIKNYILMRMKS 533



 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 17/59 (28%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
 Frame = +3

Query: 141 EPSRVIHIRNVGHE-ISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQY 314
           E  RVIH+ N+ H   S++ +L++ +P+G +   +++R K+QA ++ME    +++ + +
Sbjct: 493 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDH 551

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>MATR3_HUMAN (P43243) Matrin-3|
          Length = 847

 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
 Frame = +3

Query: 141 EPSRVIHIRNVGHEIS-ETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYY 317
           E SRV+HI +     +    LLQ+V+PFG ++  ++L   N+A ++M     + +A+ YY
Sbjct: 395 ETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYY 454

Query: 318 TTIQPSVRGRNVYLQYSSHQELNTDQSSHGRNPDQ-----DEPNRIL-LVTVHHMLYPMT 479
           TT    V G+ V +  S  Q+    +   G+ PDQ      E  R++ L  + H  Y  +
Sbjct: 455 TTTPALVFGKPVRVHLS--QKYKRIKKPEGK-PDQKFDQKQELGRVIHLSNLPHSGY--S 509

Query: 480 VEVLHQVFSPYGFVEKIVTFQKDS 551
              + ++  PYG ++  +  +  S
Sbjct: 510 DSAVLKLAEPYGKIKNYILMRMKS 533



 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 17/59 (28%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
 Frame = +3

Query: 141 EPSRVIHIRNVGHE-ISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQY 314
           E  RVIH+ N+ H   S++ +L++ +P+G +   +++R K+QA ++ME    +++ + +
Sbjct: 493 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDH 551

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>MATR3_RAT (P43244) Matrin-3 (Nuclear scaffold protein P130/MAT3)|
          Length = 845

 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 141 EPSRVIHIRNVGHEIS-ETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYY 317
           E SRV+HI +     +    LLQ+V+PFG ++  ++L   N+A ++M     + +A+ YY
Sbjct: 395 ETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYY 454

Query: 318 TTIQPSVRGRNVYLQYSSHQELNTDQSSHGRNPDQDEPNRILLVTVHHMLYP---MTVEV 488
           TT    V G+ V +  S  Q+    +   G+  ++ +  + L   +H    P    +   
Sbjct: 455 TTTPALVFGKPVRVHLS--QKYKRIKKPEGKPDEKFDQKQELGRVIHLSNLPHSGYSDSA 512

Query: 489 LHQVFSPYGFVEKIVTFQKDS 551
           + ++  PYG ++  +  +  S
Sbjct: 513 VLKLAEPYGKIKNYILMRMKS 533



 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 17/59 (28%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
 Frame = +3

Query: 141 EPSRVIHIRNVGHE-ISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQY 314
           E  RVIH+ N+ H   S++ +L++ +P+G +   +++R K+QA ++ME    +++ + +
Sbjct: 493 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDH 551

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>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (Eif3p42) (eIF3g)
          Length = 320

 Score = 37.4 bits (85), Expect = 0.028
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = +3

Query: 102 SRRRVAVSGARMAEPSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAK 257
           SRR  ++   R A+ +  I + N+  +  ETDL ++ +PFG+++++ + + K
Sbjct: 223 SRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK 274

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>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (eIF3g)
          Length = 320

 Score = 37.4 bits (85), Expect = 0.028
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = +3

Query: 102 SRRRVAVSGARMAEPSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAK 257
           SRR  ++   R A+ +  I + N+  +  ETDL ++ +PFG+++++ + + K
Sbjct: 223 SRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK 274

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>PTPA1_ASPFU (Q4WMU5) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 473

 Score = 37.4 bits (85), Expect = 0.028
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 282 PPSGQGPDSWHAA*RPWRPRQTAAPP-GAGQSRRSHARRSGCGSPWRARPSLPPTQQL 112
           P +GQ P S   A  PW     AAPP GAG +    A+R GC +P +   SLP T +L
Sbjct: 383 PSAGQTPPSGTRA--PWATATQAAPPAGAGTAAPWAAKRDGC-TPGKPPTSLPDTSRL 437

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>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 37.4 bits (85), Expect = 0.028
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -2

Query: 285 GPPSGQG-----PDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPSLPPT 121
           GPP+G       P    A   P +P   AAPP  GQ R+S     G G+P  ARP   P+
Sbjct: 497 GPPAGSPLPQRLPSPTSA---PQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPS 553

Query: 120 QQ 115
            Q
Sbjct: 554 PQ 555

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>ZN638_MOUSE (Q61464) Zinc finger protein 638 (Nuclear protein 220) (Zinc-finger|
           matrin-like protein)
          Length = 1960

 Score = 36.2 bits (82), Expect = 0.063
 Identities = 15/56 (26%), Positives = 35/56 (62%)
 Frame = +3

Query: 186 SETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTIQPSVRGRNV 353
           +E D+ +   PFG ++ V+++  +N+A ++ME   +  S ++Y  T+   ++G++V
Sbjct: 689 TEEDIRKAFLPFGKISDVLLVPCRNEAYLEMELRKAVTSIMKYIETMPLVIKGKSV 744

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>ZN638_HUMAN (Q14966) Zinc finger protein 638 (Nuclear protein 220) (Zinc-finger|
           matrin-like protein) (Cutaneous T-cell
           lymphoma-associated antigen se33-1) (CTCL tumor antigen
           se33-1)
          Length = 1978

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 15/56 (26%), Positives = 35/56 (62%)
 Frame = +3

Query: 186 SETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTIQPSVRGRNV 353
           +E D+ ++ QPFG V  V+++  + +A ++ME   +  + ++Y  T   +++G++V
Sbjct: 689 TEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTPLTIKGKSV 744

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>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy|
           suppressor of sporulation protein msa2)
          Length = 529

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 16/69 (23%), Positives = 40/69 (57%)
 Frame = +3

Query: 150 RVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTIQ 329
           R + + N+ + I+E ++ + ++PFG + ++ ++  +N A V   +++++I A+Q    + 
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQ-ELPLN 264

Query: 330 PSVRGRNVY 356
           P    R +Y
Sbjct: 265 PKWSKRRIY 273

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>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau|
            kinase)
          Length = 1321

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
 Frame = -2

Query: 297  LRKKGPPS-GQGPDSWHAA*RPWRPRQTAAPPGAGQSRRSHA--------RRSGCGSPWR 145
            LR K PP  G GP    A  RP  PR    P     +R + A        RR       +
Sbjct: 1206 LRPKQPPGRGLGPGRAQAGARPPAPRSPRLPASTSAARNASASPRSQSLSRRESPSPSHQ 1265

Query: 144  ARPSLPP 124
            ARP +PP
Sbjct: 1266 ARPGVPP 1272

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>FOXH1_HUMAN (O75593) Forkhead box protein H1 (Forkhead activin signal|
           transducer 1) (Fast-1) (hFAST-1) (Forkhead activin
           signal transducer 2) (Fast-2)
          Length = 365

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 20/48 (41%), Positives = 23/48 (47%)
 Frame = -2

Query: 267 GPDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPSLPP 124
           GP   H   RP+RP     PP  G S +S    SG G+PW   P L P
Sbjct: 145 GPYVLHG--RPYRPPSPPPPPSEGFSIKSLLGGSGEGAPW---PGLAP 187

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>GCSP_ANASP (Q8YNF9) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 983

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +3

Query: 219 FGAVAKVVMLRAKNQALVQMEDLSSSISAIQYYTTIQPSVRGRNV------YLQYSSHQ 377
           + A+AK+  + +KNQ          S   + YY TI PSV GRN+      Y  Y+ +Q
Sbjct: 85  YAALAKLKQIASKNQVF-------RSYIGMGYYDTITPSVIGRNILENPGWYTAYTPYQ 136

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>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = +3

Query: 150 RVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISA 305
           RVI ++N     +  +L ++  PFG + +++M  A   A+VQ  D++S  SA
Sbjct: 512 RVILVKNFPFGTTREELGELFVPFGKLERLLMPPAGTIAIVQFRDIASGRSA 563

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>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
 Frame = +3

Query: 144  PSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISAIQ---- 311
            P+  + I  V  ++SE+ L      FGAV KV + R +  ALV  + + ++ +A++    
Sbjct: 732  PTNCVWIDGVDEKVSESFLQSQFTRFGAVTKVSIDRNRQLALVLYDQVQNAQAAVKDMRG 791

Query: 312  ---YYTTIQPSVRGRNVYLQYSSHQELNTDQSSHGRNP 416
                   +Q     R     +   QE    QSS G NP
Sbjct: 792  TILRRKKLQVDFASRECQDAFYDKQEKQQQQSS-GSNP 828

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>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein|
          Length = 124

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 18/85 (21%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
 Frame = +3

Query: 141 EPSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVM---LRAKNQALVQMEDLSSSISAIQ 311
           E +RV+++RN+   I+  ++  +   +GA+ ++ +      K  A V  ED+  + +A+ 
Sbjct: 16  EVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVD 75

Query: 312 YYTTIQPSVRGRNVYLQYSSHQELN 386
           + +    +V  R + + Y  H +++
Sbjct: 76  HLSGF--NVANRYLIVLYYQHAKMS 98

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>CENG3_HUMAN (Q96P47) Centaurin-gamma 3 (ARF-GAP with GTP-binding protein-like,|
           ankyrin repeat and pleckstrin homology domains 3)
           (AGAP-3) (MR1-interacting protein) (MRIP-1)
           (CRAM-associated GTPase) (CRAG)
          Length = 875

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 27/110 (24%), Positives = 39/110 (35%)
 Frame = -2

Query: 462 YDER*LREFGWVHPDQDSVHESSDQYSILDEKNTASTHFFPSR*VE**CSTGWR*LRKKG 283
           + ER L    W  P  + +H+ S   S  D+ + A+T                       
Sbjct: 474 HSERPLSSSAWAGPRPEGLHQRSCSVSSADQWSEATTSL--------------------- 512

Query: 282 PPSGQGPDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPS 133
           PP  Q P S  A      P+    PP    +R+ H R+   G+P    PS
Sbjct: 513 PPGMQHPASGPAEVLSSSPKLDP-PPSPHSNRKKHRRKKSTGTPRPDGPS 561

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>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +3

Query: 150 RVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLRAKNQALVQMEDLSSSISA 305
           R+I ++N  H  +  +L ++  PFG + +++M  +   A++Q  D+ ++  A
Sbjct: 488 RIILVKNFPHGTTREELAELFLPFGKIERMLMPPSGTIAIIQYRDVPAARGA 539

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>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL|
           receptor) (Scavenger receptor class F member 1)
          Length = 830

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 15/63 (23%)
 Frame = -2

Query: 294 RKKGPPS------GQGPDSWHAA*RPW-------RPRQTAAPPGAG--QSRRSHARRSGC 160
           RKKG P       GQ P+S   A  P        RP +     GAG   SRR+    SGC
Sbjct: 738 RKKGSPGLASGSVGQSPNSAPKAGLPGATGPMAVRPEEAVRGLGAGTESSRRAQEPVSGC 797

Query: 159 GSP 151
           GSP
Sbjct: 798 GSP 800

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>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein|
          Length = 138

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 18/76 (23%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
 Frame = +3

Query: 126 GARMA-EPSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVM---LRAKNQALVQMEDLSS 293
           GA++  E +R+++I+N+ ++I+  ++ ++   FGAV ++ +      +  A V  ED+  
Sbjct: 10  GAKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFD 69

Query: 294 SISAIQYYTTIQPSVR 341
           + +A ++ +    S R
Sbjct: 70  AKTACEHLSGYNVSNR 85

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>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
 Frame = +3

Query: 129 ARMAEPSRVIHIRNVGHEISETDLLQVVQPFGAVAKVVMLR-----AKNQALVQMEDLSS 293
           A++A+    + IRN+  + SE DL  V   FGAV +V + R      +    VQ ++L  
Sbjct: 106 AKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLE 165

Query: 294 SISAIQYYTTIQPSVRGRNVYLQYSSHQELNTDQSS 401
           +  A++        ++GR V + ++  ++   D  S
Sbjct: 166 AGKALKGMN--MKEIKGRTVAVDWAVAKDKYKDTQS 199

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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -2

Query: 285 GPPSG----QGPDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPSLPPTQ 118
           GPP+G    Q   S  AA  P +    A P   GQ R+S     G G+P  ARP   P+ 
Sbjct: 495 GPPAGSPLPQRLPSPTAA--PQQSASQATPMTQGQGRQSRPVAGGPGAPPAARPPASPSP 552

Query: 117 Q 115
           Q
Sbjct: 553 Q 553

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>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +2

Query: 125 GGKDGRALQGDPHPERRA*DLRD*PAPGGAAVWRGRQGRHAACQESGPCPDGGP 286
           GG  G A    P P          P PGGA    G + + A  Q+  P P GGP
Sbjct: 222 GGSTGMARPQAPRPGGA-------PRPGGAGAPGGPRPQGAGGQDRAPRPQGGP 268

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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -2

Query: 285 GPPSG----QGPDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPSLPPTQ 118
           GPP+G    Q   S  AA  P +    A P   GQ R+S     G G+P  ARP   P+ 
Sbjct: 497 GPPAGSPLPQRLPSPTAA--PQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASPSP 554

Query: 117 Q 115
           Q
Sbjct: 555 Q 555

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>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 237 PWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPSLPPTQQ 115
           P +P   A P   GQ R+S     G G+P   RP   P+ Q
Sbjct: 515 PQQPASQATPMTQGQGRQSRPVAGGPGAPPATRPPASPSPQ 555

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>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)|
          Length = 701

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 240 RPWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPSLPPTQ 118
           RP  P+ T +PP         ARR+   +P  ARP++PP Q
Sbjct: 541 RPASPKVTRSPPETAAPVEDMARRTKRPAP--ARPTMPPPQ 579

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>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = -2

Query: 285 GPPSGQG-----PDSWHAA*RPWRPRQTAAPPGAGQSRRSHARRSGCGSPWRARPSLPPT 121
           GPP+G       P    A   P +P   A P    Q R+S     G G+P  ARP   P+
Sbjct: 225 GPPAGSPLPQRLPSPTSA---PQQPVSQAQPLSQAQGRQSRPVAGGPGAPPAARPPASPS 281

Query: 120 QQ 115
            Q
Sbjct: 282 PQ 283

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>UCRI3_TOBAC (P51133) Ubiquinol-cytochrome c reductase iron-sulfur subunit 3,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein 3) (RISP3)
          Length = 268

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +3

Query: 228 VAKVVMLRAKNQALVQMEDLSSSISAIQYYTTIQPSVRGRNVYLQYSSHQELNTDQS--- 398
           + K V+  + ++ ++ +  L   +S+I+  TT+    RG+ V+++  + +++N   S   
Sbjct: 127 ILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDINLANSVDL 186

Query: 399 SHGRNPDQD 425
              R+P QD
Sbjct: 187 GSLRDPQQD 195


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,519,793
Number of Sequences: 219361
Number of extensions: 1690166
Number of successful extensions: 5200
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 4869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5186
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result