ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31e04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189879.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1077 Score = 264 bits (133), Expect = 1e-67 Identities = 264/304 (86%), Gaps = 3/304 (0%) Strand = Plus / Plus Query: 1 cgcgaaccccaccacggggtgccagaagagg-tcgagnancgatgacgaccagnaagctg 59 ||||||||| ||||| ||||||||||||| | ||||| | ||||||||||||| |||||| Sbjct: 106 cgcgaacccgaccaccgggtgccagaagaagctcgag-atcgatgacgaccag-aagctg 163 Query: 60 cggaacctttatgacaagagaatctcccaggaggtagttggtgatcttctgggtgaggaa 119 || ||| ||||||||| ||||| |||||||| ||| ||| |||||| |||||| Sbjct: 164 cgtgcattttttgacaagaggatctctcaggaggtcagtggcgatgctctgggcgaggaa 223 Query: 120 ttcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaatgaag 179 |||||||| ||| |||||||||||||||| || ||||| |||||||| ||||| |||||| Sbjct: 224 ttcaagggctatgtcttcaagatcatggggggttgtgacaagcagggtttccctatgaag 283 Query: 180 caaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggcacaccttgcttc 239 || |||||||| ||| |||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 284 cagggagtgctcactgctggacgtgtccgccttcttcttcacaggggcacaccttgcttc 343 Query: 240 cgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtc 299 ||||| | |||||||||| |||||||||||||||| ||||| |||||||||||||| ||| Sbjct: 344 cgtgggtatggcaggcgtgatggtgagcgcaggaggaagtctgtccgtggttgcatcgtc 403 Query: 300 agcc 303 |||| Sbjct: 404 agcc 407
>dbj|AK069465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022D14, full insert sequence Length = 1078 Score = 264 bits (133), Expect = 1e-67 Identities = 264/304 (86%), Gaps = 3/304 (0%) Strand = Plus / Plus Query: 1 cgcgaaccccaccacggggtgccagaagagg-tcgagnancgatgacgaccagnaagctg 59 ||||||||| ||||| ||||||||||||| | ||||| | ||||||||||||| |||||| Sbjct: 107 cgcgaacccgaccaccgggtgccagaagaagctcgag-atcgatgacgaccag-aagctg 164 Query: 60 cggaacctttatgacaagagaatctcccaggaggtagttggtgatcttctgggtgaggaa 119 || ||| ||||||||| ||||| |||||||| ||| ||| |||||| |||||| Sbjct: 165 cgtgcattttttgacaagaggatctctcaggaggtcagtggcgatgctctgggcgaggaa 224 Query: 120 ttcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaatgaag 179 |||||||| ||| |||||||||||||||| || ||||| |||||||| ||||| |||||| Sbjct: 225 ttcaagggctatgtcttcaagatcatggggggttgtgacaagcagggtttccctatgaag 284 Query: 180 caaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggcacaccttgcttc 239 || |||||||| ||| |||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 285 cagggagtgctcactgctggacgtgtccgccttcttcttcacaggggcacaccttgcttc 344 Query: 240 cgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtc 299 ||||| | |||||||||| |||||||||||||||| ||||| |||||||||||||| ||| Sbjct: 345 cgtgggtatggcaggcgtgatggtgagcgcaggaggaagtctgtccgtggttgcatcgtc 404 Query: 300 agcc 303 |||| Sbjct: 405 agcc 408
>gb|AF295599.1| Zea mays ribosomal protein s6 RPS6-2 (rps6-2) mRNA, complete cds Length = 1023 Score = 244 bits (123), Expect = 1e-61 Identities = 198/223 (88%) Strand = Plus / Plus Query: 81 atctcccaggaggtagttggtgatcttctgggtgaggaattcaagggttatatcttcaag 140 |||||||||||||| ||||||| |||||||||||| || ||||||||| |||||||| Sbjct: 162 atctcccaggaggtcagtggtgatgctctgggtgaggagtttaagggttatgtcttcaag 221 Query: 141 atcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaacttctggg 200 ||||||||||| ||||| || || ||||||||||||||||||||||| || |||||||| Sbjct: 222 atcatgggtggatgtgacaaacaaggcttcccaatgaagcaaggagttctgacttctggt 281 Query: 201 cgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcaggcgtaat 260 ||||||||||||||||| ||||| ||||| || |||||||| |||| ||||||||||||| Sbjct: 282 cgtgtccgccttctgctccacagaggcactccctgcttccgcggttatggcaggcgtaat 341 Query: 261 ggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 |||||||||||||| ||||| ||||||||||| ||||| |||| Sbjct: 342 ggtgagcgcaggaggaagtctgtccgtggttgtattgtgagcc 384
>gb|AY103674.1| Zea mays PCO104001 mRNA sequence Length = 1198 Score = 244 bits (123), Expect = 1e-61 Identities = 198/223 (88%) Strand = Plus / Plus Query: 81 atctcccaggaggtagttggtgatcttctgggtgaggaattcaagggttatatcttcaag 140 |||||||||||||| ||||||| |||||||||||| || ||||||||| |||||||| Sbjct: 290 atctcccaggaggtcagtggtgatgctctgggtgaggagtttaagggttatgtcttcaag 349 Query: 141 atcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaacttctggg 200 ||||||||||| ||||| || || ||||||||||||||||||||||| || |||||||| Sbjct: 350 atcatgggtggatgtgacaaacaaggcttcccaatgaagcaaggagttctgacttctggt 409 Query: 201 cgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcaggcgtaat 260 ||||||||||||||||| ||||| ||||| || |||||||| |||| ||||||||||||| Sbjct: 410 cgtgtccgccttctgctccacagaggcactccctgcttccgcggttatggcaggcgtaat 469 Query: 261 ggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 |||||||||||||| ||||| ||||||||||| ||||| |||| Sbjct: 470 ggtgagcgcaggaggaagtctgtccgtggttgtattgtgagcc 512
>gb|U92045.1|ZMU92045 Zea mays ribosomal protein S6 RPS6-1 (rps6-1) mRNA, complete cds Length = 1039 Score = 230 bits (116), Expect = 2e-57 Identities = 188/212 (88%) Strand = Plus / Plus Query: 84 tcccaggaggtagttggtgatcttctgggtgaggaattcaagggttatatcttcaagatc 143 ||||||||||| ||||||| |||||||||||| |||||||||||| ||||||||||| Sbjct: 166 tcccaggaggtcagtggtgatgctctgggtgaggagttcaagggttatgtcttcaagatc 225 Query: 144 atgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgt 203 |||||||| ||||| ||||| ||||||||||||||||||||||| | |||||||| ||| Sbjct: 226 atgggtggatgtgacaagcaaggcttcccaatgaagcaaggagttttgacttctggtcgt 285 Query: 204 gtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcaggcgtaatggt 263 || || |||||||| || ||||| || || ||||||||||||| |||||||||||||||| Sbjct: 286 gttcgtcttctgctccatagggggactccctgcttccgtggttatggcaggcgtaatggt 345 Query: 264 gagcgcaggagaaagtccgtccgtggttgcat 295 ||||||||||| ||||| |||||||||||||| Sbjct: 346 gagcgcaggaggaagtctgtccgtggttgcat 377
>ref|XM_470801.1| Oryza sativa (japonica cultivar-group), mRNA Length = 983 Score = 216 bits (109), Expect = 3e-53 Identities = 255/300 (85%), Gaps = 3/300 (1%) Strand = Plus / Plus Query: 5 aaccccaccacggggtgccagaagagg-tcgagnancgatgacgaccagnaagctgcgga 63 ||||| ||||| ||||||||||||| | ||||| | ||||||||||||| ||||| ||| Sbjct: 60 aacccgaccaccgggtgccagaagaagctcgag-atcgatgacgaccag-aagctccggg 117 Query: 64 acctttatgacaagagaatctcccaggaggtagttggtgatcttctgggtgaggaattca 123 ||||||||||||| ||||||||||| || ||||||| ||| || || ||||||| Sbjct: 118 cattttatgacaagaggatctcccaggaagtcagtggtgatgctcttggcgaagaattca 177 Query: 124 agggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaag 183 |||| ||| | |||||||||||||| |||||||| ||||| || ||||| |||||||| | Sbjct: 178 agggctatgtattcaagatcatgggaggctgtgacaagcaaggtttccccatgaagcagg 237 Query: 184 gagtgctaacttctgggcgtgtccgccttctgcttcacaggggcacaccttgcttccgtg 243 | ||||| |||||||| |||||||||||||| || |||||||| || || |||||||||| Sbjct: 238 gtgtgcttacttctggacgtgtccgccttctcctccacaggggtaccccctgcttccgtg 297 Query: 244 gttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 | | |||||||||| ||||||||||||| || ||||| |||||||||||||||||||||| Sbjct: 298 gatatggcaggcgtgatggtgagcgcagaaggaagtcagtccgtggttgcattgtcagcc 357
>dbj|AK121621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045B01, full insert sequence Length = 1018 Score = 216 bits (109), Expect = 3e-53 Identities = 255/300 (85%), Gaps = 3/300 (1%) Strand = Plus / Plus Query: 5 aaccccaccacggggtgccagaagagg-tcgagnancgatgacgaccagnaagctgcgga 63 ||||| ||||| ||||||||||||| | ||||| | ||||||||||||| ||||| ||| Sbjct: 58 aacccgaccaccgggtgccagaagaagctcgag-atcgatgacgaccag-aagctccggg 115 Query: 64 acctttatgacaagagaatctcccaggaggtagttggtgatcttctgggtgaggaattca 123 ||||||||||||| ||||||||||| || ||||||| ||| || || ||||||| Sbjct: 116 cattttatgacaagaggatctcccaggaagtcagtggtgatgctcttggcgaagaattca 175 Query: 124 agggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaag 183 |||| ||| | |||||||||||||| |||||||| ||||| || ||||| |||||||| | Sbjct: 176 agggctatgtattcaagatcatgggaggctgtgacaagcaaggtttccccatgaagcagg 235 Query: 184 gagtgctaacttctgggcgtgtccgccttctgcttcacaggggcacaccttgcttccgtg 243 | ||||| |||||||| |||||||||||||| || |||||||| || || |||||||||| Sbjct: 236 gtgtgcttacttctggacgtgtccgccttctcctccacaggggtaccccctgcttccgtg 295 Query: 244 gttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 | | |||||||||| ||||||||||||| || ||||| |||||||||||||||||||||| Sbjct: 296 gatatggcaggcgtgatggtgagcgcagaaggaagtcagtccgtggttgcattgtcagcc 355
>dbj|AK061827.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-C07, full insert sequence Length = 990 Score = 216 bits (109), Expect = 3e-53 Identities = 255/300 (85%), Gaps = 3/300 (1%) Strand = Plus / Plus Query: 5 aaccccaccacggggtgccagaagagg-tcgagnancgatgacgaccagnaagctgcgga 63 ||||| ||||| ||||||||||||| | ||||| | ||||||||||||| ||||| ||| Sbjct: 57 aacccgaccaccgggtgccagaagaagctcgag-atcgatgacgaccag-aagctccggg 114 Query: 64 acctttatgacaagagaatctcccaggaggtagttggtgatcttctgggtgaggaattca 123 ||||||||||||| ||||||||||| || ||||||| ||| || || ||||||| Sbjct: 115 cattttatgacaagaggatctcccaggaagtcagtggtgatgctcttggcgaagaattca 174 Query: 124 agggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaag 183 |||| ||| | |||||||||||||| |||||||| ||||| || ||||| |||||||| | Sbjct: 175 agggctatgtattcaagatcatgggaggctgtgacaagcaaggtttccccatgaagcagg 234 Query: 184 gagtgctaacttctgggcgtgtccgccttctgcttcacaggggcacaccttgcttccgtg 243 | ||||| |||||||| |||||||||||||| || |||||||| || || |||||||||| Sbjct: 235 gtgtgcttacttctggacgtgtccgccttctcctccacaggggtaccccctgcttccgtg 294 Query: 244 gttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 | | |||||||||| ||||||||||||| || ||||| |||||||||||||||||||||| Sbjct: 295 gatatggcaggcgtgatggtgagcgcagaaggaagtcagtccgtggttgcattgtcagcc 354
>gb|BT014411.1| Lycopersicon esculentum clone 133718F, mRNA sequence Length = 1067 Score = 149 bits (75), Expect = 6e-33 Identities = 165/195 (84%) Strand = Plus / Plus Query: 109 tgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggct 168 |||||||||| ||||||||||| | |||||||| ||||| || ||||| ||||| || | Sbjct: 185 tgggtgaggagttcaagggttacgttttcaagataatgggaggatgtgacaagcaagggt 244 Query: 169 tcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggca 228 |||| ||||| || |||||| ||||| |||| ||||| |||||| |||| ||||| || | Sbjct: 245 tccctatgaaacagggagtgttaactcctggccgtgttcgccttttgctccacagaggta 304 Query: 229 caccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtg 288 | |||||||||||||||| ||| ||||| ||||| |||||||| || ||||| ||||||| Sbjct: 305 ctccttgcttccgtggttatggtaggcgaaatggagagcgcagaaggaagtctgtccgtg 364 Query: 289 gttgcattgtcagcc 303 | ||||||||||||| Sbjct: 365 gatgcattgtcagcc 379
>gb|DQ191669.1| Solanum tuberosum ribosomal protein S6-like protein mRNA, complete cds Length = 1032 Score = 145 bits (73), Expect = 9e-32 Identities = 193/233 (82%) Strand = Plus / Plus Query: 69 tatgacaagagaatctcccaggaggtagttggtgatcttctgggtgaggaattcaagggt 128 ||||||||||| |||||||||||||| || ||| | |||| ||||| |||||||| Sbjct: 133 tatgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaaggga 192 Query: 129 tatatcttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtg 188 || | |||||||| ||||| || ||||| ||||| || |||||||||||||| |||||| Sbjct: 193 tacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtg 252 Query: 189 ctaacttctgggcgtgtccgccttctgcttcacaggggcacaccttgcttccgtggtttt 248 ||||| | || ||||| || ||||||||| |||| ||||| ||||||||||||||| | Sbjct: 253 ttaactccaggccgtgttcgtcttctgctttacagaggcactccttgcttccgtggtcat 312 Query: 249 ggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcag 301 || ||||||||||||||||| || || ||||| |||||||| ||||| ||||| Sbjct: 313 ggtaggcgtaatggtgagcgaagaaggaagtctgtccgtggatgcatcgtcag 365
>gb|BT014365.1| Lycopersicon esculentum clone 133651F, mRNA sequence Length = 1065 Score = 141 bits (71), Expect = 1e-30 Identities = 191/231 (82%) Strand = Plus / Plus Query: 71 tgacaagagaatctcccaggaggtagttggtgatcttctgggtgaggaattcaagggtta 130 ||||||||| |||||||||||||| || ||| | |||| ||||| |||||||| || Sbjct: 155 tgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggata 214 Query: 131 tatcttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgct 190 | |||||||| ||||| || ||||| ||||| || |||||||||||||| |||||| | Sbjct: 215 cgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgtt 274 Query: 191 aacttctgggcgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttgg 250 |||| | || ||||| || |||||||||||||| ||||| |||||||||||||||| ||| Sbjct: 275 aactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatgg 334 Query: 251 caggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcag 301 |||||||||||||| | | || ||||| |||||||| ||||||||||| Sbjct: 335 taggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcag 385
>gb|DQ241846.1| Solanum tuberosum clone 186G09 unknown mRNA Length = 1056 Score = 141 bits (71), Expect = 1e-30 Identities = 164/195 (84%) Strand = Plus / Plus Query: 109 tgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggct 168 |||||||||| ||||| ||||| | |||||||| ||||| || ||||| ||||| || | Sbjct: 169 tgggtgaggagttcaaaggttacgttttcaagataatgggaggatgtgacaagcaagggt 228 Query: 169 tcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggca 228 ||||||||||||| |||||| ||||| |||| ||||| |||||| |||| |||| || | Sbjct: 229 tcccaatgaagcagggagtgttaactcctggccgtgttcgccttttgctctacagaggta 288 Query: 229 caccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtg 288 | ||||||||||||||| ||| ||||| ||||| |||||||| || ||||| ||||||| Sbjct: 289 ctccttgcttccgtggtcatggtaggcgaaatggagagcgcagaaggaagtctgtccgtg 348 Query: 289 gttgcattgtcagcc 303 | ||||||||||||| Sbjct: 349 gatgcattgtcagcc 363
>gb|AY453394.1| Glycine max ribosomal protein S6 (RPS6) mRNA, complete cds Length = 1020 Score = 129 bits (65), Expect = 6e-27 Identities = 161/193 (83%) Strand = Plus / Plus Query: 111 ggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttc 170 ||||||||||| ||||| ||| ||||||| || | || || ||||| || || || || Sbjct: 186 ggtgaggaatttaagggctatgtcttcaaaattaccggaggttgtgacaaacaaggattt 245 Query: 171 ccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggcaca 230 ||||||||||| |||||||| ||| |||| ||||| | ||| ||||||||||||| || Sbjct: 246 ccaatgaagcagggagtgctgactcctggtcgtgttagacttttgcttcacaggggaact 305 Query: 231 ccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggt 290 |||||||||||||| | ||| ||||||||||| ||||| ||||||||||| || ||||| Sbjct: 306 ccttgcttccgtggatatggaaggcgtaatggagagcgtaggagaaagtctgttcgtggg 365 Query: 291 tgcattgtcagcc 303 ||||||||||||| Sbjct: 366 tgcattgtcagcc 378
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 127 bits (64), Expect = 2e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 115 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 174 ||||||||||||| ||| |||||||||||||||| || ||||| |||||||| ||||| | Sbjct: 25670681 aggaattcaagggctatgtcttcaagatcatggggggttgtgacaagcagggtttcccta 25670740 Query: 175 tgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacagggg 226 ||||||| |||||||| ||| |||| |||||||||||||| ||||||||||| Sbjct: 25670741 tgaagcagggagtgctcactgctggacgtgtccgccttcttcttcacagggg 25670792 Score = 109 bits (55), Expect = 5e-21 Identities = 73/79 (92%) Strand = Plus / Plus Query: 225 ggcacaccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtc 284 |||||||||||||||||||| | |||||||||| |||||||||||||||| ||||| ||| Sbjct: 25670871 ggcacaccttgcttccgtgggtatggcaggcgtgatggtgagcgcaggaggaagtctgtc 25670930 Query: 285 cgtggttgcattgtcagcc 303 ||||||||||| ||||||| Sbjct: 25670931 cgtggttgcatcgtcagcc 25670949 Score = 44.1 bits (22), Expect = 0.25 Identities = 47/53 (88%), Gaps = 2/53 (3%) Strand = Plus / Plus Query: 1 cgcgaaccccaccacggggtgccagaag-aggtcgagnancgatgacgaccag 52 ||||||||| ||||| |||||||||||| || ||||| | ||||||||||||| Sbjct: 25669528 cgcgaacccgaccaccgggtgccagaagaagctcgag-atcgatgacgaccag 25669579
>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0594D10 Length = 143200 Score = 127 bits (64), Expect = 2e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 115 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 174 ||||||||||||| ||| |||||||||||||||| || ||||| |||||||| ||||| | Sbjct: 124654 aggaattcaagggctatgtcttcaagatcatggggggttgtgacaagcagggtttcccta 124713 Query: 175 tgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacagggg 226 ||||||| |||||||| ||| |||| |||||||||||||| ||||||||||| Sbjct: 124714 tgaagcagggagtgctcactgctggacgtgtccgccttcttcttcacagggg 124765 Score = 109 bits (55), Expect = 5e-21 Identities = 73/79 (92%) Strand = Plus / Plus Query: 225 ggcacaccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtc 284 |||||||||||||||||||| | |||||||||| |||||||||||||||| ||||| ||| Sbjct: 124844 ggcacaccttgcttccgtgggtatggcaggcgtgatggtgagcgcaggaggaagtctgtc 124903 Query: 285 cgtggttgcattgtcagcc 303 ||||||||||| ||||||| Sbjct: 124904 cgtggttgcatcgtcagcc 124922 Score = 44.1 bits (22), Expect = 0.25 Identities = 47/53 (88%), Gaps = 2/53 (3%) Strand = Plus / Plus Query: 1 cgcgaaccccaccacggggtgccagaag-aggtcgagnancgatgacgaccag 52 ||||||||| ||||| |||||||||||| || ||||| | ||||||||||||| Sbjct: 123501 cgcgaacccgaccaccgggtgccagaagaagctcgag-atcgatgacgaccag 123552
>emb|AJ277533.1|AOF277533 Asparagus officinalis mRNA for S6 ribosomal protein (rps6 gene) Length = 959 Score = 115 bits (58), Expect = 8e-23 Identities = 157/190 (82%) Strand = Plus / Plus Query: 114 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 173 ||||| |||||||| ||| | ||||| |||||||| || ||||| |||||||| || || Sbjct: 152 gaggagttcaagggatatgttttcaaaatcatgggaggttgtgacaagcagggttttccc 211 Query: 174 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggcacacct 233 |||||||| |||||||| ||| |||| || |||||||| |||| ||||| || |||||| Sbjct: 212 atgaagcagggagtgctgactcctggtcgcgtccgcctattgctgcacagaggaacacct 271 Query: 234 tgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgc 293 ||||||||||||| ||| ||||| || || ||||| || || ||||| || ||||| ||| Sbjct: 272 tgcttccgtggttatggaaggcgcaacggagagcgaagaaggaagtctgtgcgtgggtgc 331 Query: 294 attgtcagcc 303 ||||| |||| Sbjct: 332 attgttagcc 341
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 111 bits (56), Expect = 1e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 115 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 174 ||||||||||||| ||| | |||||||||||||| |||||||| ||||| || ||||| | Sbjct: 15461567 aggaattcaagggctatgtattcaagatcatgggaggctgtgacaagcaaggtttcccca 15461508 Query: 175 tgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacagggg 226 ||||||| || ||||| |||||||| |||||||||||||| || |||||||| Sbjct: 15461507 tgaagcagggtgtgcttacttctggacgtgtccgccttctcctccacagggg 15461456 Score = 91.7 bits (46), Expect = 1e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 234 tgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgc 293 ||||||||||| | |||||||||| ||||||||||||| || ||||| |||||||||||| Sbjct: 15461353 tgcttccgtggatatggcaggcgtgatggtgagcgcagaaggaagtcagtccgtggttgc 15461294 Query: 294 attgtcagcc 303 |||||||||| Sbjct: 15461293 attgtcagcc 15461284 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 67 tttatgacaagagaatctcccagga 91 ||||||||||||| ||||||||||| Sbjct: 15461701 tttatgacaagaggatctcccagga 15461677
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete sequence Length = 164705 Score = 111 bits (56), Expect = 1e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 115 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 174 ||||||||||||| ||| | |||||||||||||| |||||||| ||||| || ||||| | Sbjct: 39959 aggaattcaagggctatgtattcaagatcatgggaggctgtgacaagcaaggtttcccca 40018 Query: 175 tgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacagggg 226 ||||||| || ||||| |||||||| |||||||||||||| || |||||||| Sbjct: 40019 tgaagcagggtgtgcttacttctggacgtgtccgccttctcctccacagggg 40070 Score = 91.7 bits (46), Expect = 1e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 234 tgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgc 293 ||||||||||| | |||||||||| ||||||||||||| || ||||| |||||||||||| Sbjct: 40173 tgcttccgtggatatggcaggcgtgatggtgagcgcagaaggaagtcagtccgtggttgc 40232 Query: 294 attgtcagcc 303 |||||||||| Sbjct: 40233 attgtcagcc 40242 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 67 tttatgacaagagaatctcccagga 91 ||||||||||||| ||||||||||| Sbjct: 39825 tttatgacaagaggatctcccagga 39849
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 111 bits (56), Expect = 1e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 115 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 174 ||||||||||||| ||| | |||||||||||||| |||||||| ||||| || ||||| | Sbjct: 15456101 aggaattcaagggctatgtattcaagatcatgggaggctgtgacaagcaaggtttcccca 15456042 Query: 175 tgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacagggg 226 ||||||| || ||||| |||||||| |||||||||||||| || |||||||| Sbjct: 15456041 tgaagcagggtgtgcttacttctggacgtgtccgccttctcctccacagggg 15455990 Score = 91.7 bits (46), Expect = 1e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 234 tgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgc 293 ||||||||||| | |||||||||| ||||||||||||| || ||||| |||||||||||| Sbjct: 15455887 tgcttccgtggatatggcaggcgtgatggtgagcgcagaaggaagtcagtccgtggttgc 15455828 Query: 294 attgtcagcc 303 |||||||||| Sbjct: 15455827 attgtcagcc 15455818 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 67 tttatgacaagagaatctcccagga 91 ||||||||||||| ||||||||||| Sbjct: 15456235 tttatgacaagaggatctcccagga 15456211
>emb|X68050.1|NTRPS6 N.tabacum mRNA for ribosomal protein S6 Length = 804 Score = 109 bits (55), Expect = 5e-21 Identities = 151/183 (82%) Strand = Plus / Minus Query: 121 tcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaatgaagc 180 |||| |||||| | |||||||| ||||| || ||||| |||||||| || |||||||||| Sbjct: 804 tcaaaggttatgtgttcaagattatgggaggatgtgacaagcaggggtttccaatgaagc 745 Query: 181 aaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggcacaccttgcttcc 240 | ||||| ||||| | || ||||| |||||| |||| || | ||||| ||||| |||| Sbjct: 744 agggagttttaactccaggccgtgttcgccttttgctgtaccgcggcactccttgtttcc 685 Query: 241 gtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtca 300 | || | ||| ||| | |||||||||||||| |||||||| |||||||| |||||||||| Sbjct: 684 gggggtatggtaggagaaatggtgagcgcagaagaaagtctgtccgtggatgcattgtca 625 Query: 301 gcc 303 ||| Sbjct: 624 gcc 622
>gb|AY293401.1| Brassica napus ribosomal protein S6 (RPS6) mRNA, complete cds Length = 980 Score = 93.7 bits (47), Expect = 3e-16 Identities = 158/195 (81%) Strand = Plus / Plus Query: 109 tgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggct 168 |||| ||||| |||||||| || || |||||||||||||| || ||||| ||||| |||| Sbjct: 182 tgggcgaggagttcaagggatacattttcaagatcatgggagggtgtgacaagcaaggct 241 Query: 169 tcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggca 228 ||||||||||||| ||||| ||||| | || ||||| |||||| |||||||| | || | Sbjct: 242 tcccaatgaagcagggagttttaactccaggccgtgttcgccttttgcttcaccgaggaa 301 Query: 229 caccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtg 288 | ||||||||| | || || ||| | | ||| ||| | || |||||||| || |||| Sbjct: 302 ctccttgcttcagaggacacggaaggaggactggagagaggagaagaaagtctgttcgtg 361 Query: 289 gttgcattgtcagcc 303 ||||||||||||||| Sbjct: 362 gttgcattgtcagcc 376
>emb|AJ010227.1|CAR010227 Cicer arietinum mRNA for 40S ribosomal protein S6, partial Length = 920 Score = 93.7 bits (47), Expect = 3e-16 Identities = 158/195 (81%) Strand = Plus / Plus Query: 109 tgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggct 168 |||| |||||||| || || ||| | |||||||||| ||||| ||||| || || || | Sbjct: 12 tgggcgaggaatttaaaggctatgttttcaagatcactggtgggtgtgacaaacaaggat 71 Query: 169 tcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggca 228 ||||||||||||| |||||||| || |||| ||||| || || ||||||| || || | Sbjct: 72 tcccaatgaagcagggagtgctgacacctggtcgtgttcgactcttgcttcatagaggaa 131 Query: 229 caccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtg 288 | ||||| |||||||| | ||| ||||| ||||| ||||| || |||||||| || |||| Sbjct: 132 ctccttgtttccgtggatatggaaggcgcaatggagagcgtagaagaaagtctgttcgtg 191 Query: 289 gttgcattgtcagcc 303 | ||||||||||||| Sbjct: 192 gatgcattgtcagcc 206
>dbj|AP006076.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT19M07, TM0114, complete sequence Length = 94533 Score = 89.7 bits (45), Expect = 5e-15 Identities = 66/73 (90%) Strand = Plus / Plus Query: 231 ccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggt 290 |||||||||||||| | ||| ||||||||||| ||||||||||||||||| || ||||| Sbjct: 18674 ccttgcttccgtggatatggaaggcgtaatggagagcgcaggagaaagtctgtacgtgga 18733 Query: 291 tgcattgtcagcc 303 ||||||||||||| Sbjct: 18734 tgcattgtcagcc 18746
>ref|NM_121074.2| Arabidopsis thaliana EMB3010; structural constituent of ribosome AT5G10360 (EMB3010) mRNA, complete cds Length = 1095 Score = 87.7 bits (44), Expect = 2e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 114 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 173 |||||||||||||| || | |||||||||||||| || ||||| ||||| || |||||| Sbjct: 212 gaggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttccca 271 Query: 174 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 221 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 272 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 319 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 274 gaaagtccgtccgtggttgcattgtcagcc 303 ||||||| ||||||||||||||||| |||| Sbjct: 372 gaaagtctgtccgtggttgcattgtgagcc 401
>gb|AY093783.1| Arabidopsis thaliana AT5g10360/F12B17_290 mRNA, complete cds Length = 750 Score = 87.7 bits (44), Expect = 2e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 114 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 173 |||||||||||||| || | |||||||||||||| || ||||| ||||| || |||||| Sbjct: 127 gaggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttccca 186 Query: 174 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 221 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 187 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 234 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 274 gaaagtccgtccgtggttgcattgtcagcc 303 ||||||| ||||||||||||||||| |||| Sbjct: 287 gaaagtctgtccgtggttgcattgtgagcc 316
>gb|AY057634.1| Arabidopsis thaliana AT5g10360/F12B17_290 mRNA, complete cds Length = 993 Score = 87.7 bits (44), Expect = 2e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 114 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 173 |||||||||||||| || | |||||||||||||| || ||||| ||||| || |||||| Sbjct: 212 gaggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttccca 271 Query: 174 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 221 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 272 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 319 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 274 gaaagtccgtccgtggttgcattgtcagcc 303 ||||||| ||||||||||||||||| |||| Sbjct: 372 gaaagtctgtccgtggttgcattgtgagcc 401
>gb|AY045594.1| Arabidopsis thaliana AT5g10360/F12B17_290 mRNA, complete cds Length = 993 Score = 87.7 bits (44), Expect = 2e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 114 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 173 |||||||||||||| || | |||||||||||||| || ||||| ||||| || |||||| Sbjct: 212 gaggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttccca 271 Query: 174 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 221 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 272 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 319 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 274 gaaagtccgtccgtggttgcattgtcagcc 303 ||||||| ||||||||||||||||| |||| Sbjct: 372 gaaagtctgtccgtggttgcattgtgagcc 401
>emb|BX832002.1|CNS0A26R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH45ZC11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 969 Score = 87.7 bits (44), Expect = 2e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 114 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 173 |||||||||||||| || | |||||||||||||| || ||||| ||||| || |||||| Sbjct: 195 gaggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttccca 254 Query: 174 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 221 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 255 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 302 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 274 gaaagtccgtccgtggttgcattgtcagcc 303 ||||||| ||||||||||||||||| |||| Sbjct: 355 gaaagtctgtccgtggttgcattgtgagcc 384
>emb|BX830696.1|CNS0A0OB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS15ZE05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 947 Score = 87.7 bits (44), Expect = 2e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 114 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 173 |||||||||||||| || | |||||||||||||| || ||||| ||||| || |||||| Sbjct: 193 gaggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttccca 252 Query: 174 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 221 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 253 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 300 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 274 gaaagtccgtccgtggttgcattgtcagcc 303 ||||||| ||||||||||||||||| |||| Sbjct: 353 gaaagtctgtccgtggttgcattgtgagcc 382
>emb|Y14052.1|ATY14052 Arabidopsis thaliana mRNA for ribosomal protein S6 Length = 957 Score = 87.7 bits (44), Expect = 2e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 114 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 173 |||||||||||||| || | |||||||||||||| || ||||| ||||| || |||||| Sbjct: 127 gaggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttccca 186 Query: 174 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 221 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 187 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 234 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 274 gaaagtccgtccgtggttgcattgtcagcc 303 ||||||| ||||||||||||||||| |||| Sbjct: 287 gaaagtctgtccgtggttgcattgtgagcc 316
>emb|AL353995.1|ATF12B17 Arabidopsis thaliana DNA chromosome 5, BAC clone F12B17 (ESSA project) Length = 113053 Score = 85.7 bits (43), Expect = 7e-14 Identities = 91/107 (85%) Strand = Plus / Plus Query: 115 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 174 ||||||||||||| || | |||||||||||||| || ||||| ||||| || ||||||| Sbjct: 105321 aggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttcccaa 105380 Query: 175 tgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 221 |||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 105381 tgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 105427 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 274 gaaagtccgtccgtggttgcattgtcagcc 303 ||||||| ||||||||||||||||| |||| Sbjct: 105577 gaaagtctgtccgtggttgcattgtgagcc 105606
>dbj|D78497.1| Brassica rapa mRNA for putative ribosomal protein, partial cds Length = 426 Score = 85.7 bits (43), Expect = 7e-14 Identities = 157/195 (80%) Strand = Plus / Plus Query: 109 tgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggct 168 |||| ||||| |||||||| || | ||||||||||||||||| ||||| ||||| || | Sbjct: 71 tgggcgaggagttcaaggggtacgttttcaagatcatgggtgggtgtgacaagcaaggtt 130 Query: 169 tcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggca 228 |||| |||||||| ||||| ||||| |||| ||||| |||||| |||||||| | || | Sbjct: 131 tccctatgaagcagggagttttaactcctggccgtgttcgccttttgcttcaccgaggaa 190 Query: 229 caccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtg 288 | |||||||| | || ||| ||| | | ||| ||| | || |||||||| || |||| Sbjct: 191 ctccttgctttagaggacatgggaggaggactggagagaggagaagaaagtctgttcgtg 250 Query: 289 gttgcattgtcagcc 303 ||||||||||||||| Sbjct: 251 gttgcattgtcagcc 265
>emb|BX829995.1|CNS0A1FC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB52ZB07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 981 Score = 79.8 bits (40), Expect = 5e-12 Identities = 91/108 (84%) Strand = Plus / Plus Query: 114 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 173 |||||||||||||| || | |||||||||||||| || ||| | ||||| || |||||| Sbjct: 193 gaggaattcaagggatacgtattcaagatcatgggaggatgttacaagcaaggtttccca 252 Query: 174 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 221 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 253 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 300 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 274 gaaagtccgtccgtggttgcattgtcagcc 303 ||||||| ||||||||||||||||| |||| Sbjct: 353 gaaagtctgtccgtggttgcattgtgagcc 382
>ref|NM_119319.3| Arabidopsis thaliana RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome AT4G31700 (RPS6) mRNA, complete cds Length = 993 Score = 73.8 bits (37), Expect = 3e-10 Identities = 136/169 (80%) Strand = Plus / Plus Query: 135 ttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaact 194 |||||||||| |||||| || |||||||| || |||||||||||||| ||||| | ||| Sbjct: 159 ttcaagatcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgact 218 Query: 195 tctgggcgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcagg 254 | || ||||| |||||| |||||||| | || || ||||||||| | || ||| ||| Sbjct: 219 ccaggccgtgttcgccttttgcttcaccgaggaactccttgcttcagaggacatggaagg 278 Query: 255 cgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 | | ||||||| | || |||||||| || |||||||||||||| |||| Sbjct: 279 agaactggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 327
>gb|BT000693.1| Arabidopsis thaliana clone RAFL07-09-P18 (R10989) putative ribosomal protein S6 (At4g31700) mRNA, complete cds Length = 962 Score = 73.8 bits (37), Expect = 3e-10 Identities = 136/169 (80%) Strand = Plus / Plus Query: 135 ttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaact 194 |||||||||| |||||| || |||||||| || |||||||||||||| ||||| | ||| Sbjct: 161 ttcaagatcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgact 220 Query: 195 tctgggcgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcagg 254 | || ||||| |||||| |||||||| | || || ||||||||| | || ||| ||| Sbjct: 221 ccaggccgtgttcgccttttgcttcaccgaggaactccttgcttcagaggacatggaagg 280 Query: 255 cgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 | | ||||||| | || |||||||| || |||||||||||||| |||| Sbjct: 281 agaactggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 329
>gb|AY113983.1| Arabidopsis thaliana putative ribosomal protein S6 (At4g31700) mRNA, complete cds Length = 784 Score = 73.8 bits (37), Expect = 3e-10 Identities = 136/169 (80%) Strand = Plus / Plus Query: 135 ttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaact 194 |||||||||| |||||| || |||||||| || |||||||||||||| ||||| | ||| Sbjct: 148 ttcaagatcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgact 207 Query: 195 tctgggcgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcagg 254 | || ||||| |||||| |||||||| | || || ||||||||| | || ||| ||| Sbjct: 208 ccaggccgtgttcgccttttgcttcaccgaggaactccttgcttcagaggacatggaagg 267 Query: 255 cgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 | | ||||||| | || |||||||| || |||||||||||||| |||| Sbjct: 268 agaactggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 316
>gb|AY050803.1| Arabidopsis thaliana putative ribosomal protein S6 (At4g31700) mRNA, complete cds Length = 989 Score = 73.8 bits (37), Expect = 3e-10 Identities = 136/169 (80%) Strand = Plus / Plus Query: 135 ttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaact 194 |||||||||| |||||| || |||||||| || |||||||||||||| ||||| | ||| Sbjct: 155 ttcaagatcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgact 214 Query: 195 tctgggcgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcagg 254 | || ||||| |||||| |||||||| | || || ||||||||| | || ||| ||| Sbjct: 215 ccaggccgtgttcgccttttgcttcaccgaggaactccttgcttcagaggacatggaagg 274 Query: 255 cgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 | | ||||||| | || |||||||| || |||||||||||||| |||| Sbjct: 275 agaactggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 323
>emb|BX826399.1|CNS0A4KZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZD05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 938 Score = 73.8 bits (37), Expect = 3e-10 Identities = 136/169 (80%) Strand = Plus / Plus Query: 135 ttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaact 194 |||||||||| |||||| || |||||||| || |||||||||||||| ||||| | ||| Sbjct: 144 ttcaagatcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgact 203 Query: 195 tctgggcgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcagg 254 | || ||||| |||||| |||||||| | || || ||||||||| | || ||| ||| Sbjct: 204 ccaggccgtgttcgccttttgcttcaccgaggaactccttgcttcagaggacatggaagg 263 Query: 255 cgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 | | ||||||| | || |||||||| || |||||||||||||| |||| Sbjct: 264 agaactggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 312
>gb|AF034217.1|AF034217 Arabidopsis thaliana ribosomal protein S6 (rps6) mRNA, complete cds Length = 945 Score = 73.8 bits (37), Expect = 3e-10 Identities = 136/169 (80%) Strand = Plus / Plus Query: 135 ttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaact 194 |||||||||| |||||| || |||||||| || |||||||||||||| ||||| | ||| Sbjct: 151 ttcaagatcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgact 210 Query: 195 tctgggcgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcagg 254 | || ||||| |||||| |||||||| | || || ||||||||| | || ||| ||| Sbjct: 211 ccaggccgtgttcgccttttgcttcaccgaggaactccttgcttcagaggacatggaagg 270 Query: 255 cgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 | | ||||||| | || |||||||| || |||||||||||||| |||| Sbjct: 271 agaactggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 319
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75 Length = 196242 Score = 61.9 bits (31), Expect = 1e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 135 ttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaact 194 |||||||||| |||||| || |||||||| || |||||||||||||| ||||| | ||| Sbjct: 113058 ttcaagatcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgact 112999 Query: 195 tctgggcgtgtccgccttctgcttcac 221 | || ||||| |||||| |||||||| Sbjct: 112998 ccaggccgtgttcgccttttgcttcac 112972 Score = 40.1 bits (20), Expect = 4.0 Identities = 38/44 (86%) Strand = Plus / Minus Query: 260 tggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 ||||||| | || |||||||| || |||||||||||||| |||| Sbjct: 112824 tggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 112781
>emb|AL031004.1|ATF28M20 Arabidopsis thaliana DNA chromosome 4, BAC clone F28M20 (ESSAII project) Length = 90902 Score = 61.9 bits (31), Expect = 1e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 135 ttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaact 194 |||||||||| |||||| || |||||||| || |||||||||||||| ||||| | ||| Sbjct: 40213 ttcaagatcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgact 40272 Query: 195 tctgggcgtgtccgccttctgcttcac 221 | || ||||| |||||| |||||||| Sbjct: 40273 ccaggccgtgttcgccttttgcttcac 40299 Score = 40.1 bits (20), Expect = 4.0 Identities = 38/44 (86%) Strand = Plus / Plus Query: 260 tggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 ||||||| | || |||||||| || |||||||||||||| |||| Sbjct: 40447 tggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 40490
>gb|AC155341.1| Brassica rapa subsp. pekinensis chromosome 6 clone KBrH004D11, complete sequence Length = 106476 Score = 58.0 bits (29), Expect = 2e-05 Identities = 86/105 (81%) Strand = Plus / Minus Query: 135 ttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaact 194 |||||||||||||| || || || ||||| |||||||| ||||| || ||||| || || Sbjct: 89824 ttcaagatcatgggaggatgcgacaagcaaggcttcccgatgaaacagggagttctcacc 89765 Query: 195 tctgggcgtgtccgccttctgcttcacaggggcacaccttgcttc 239 |||| |||||||| || |||||||| | ||||| ||||||||| Sbjct: 89764 cctggtcgtgtccgtctcttgcttcaccgaggcactccttgcttc 89720 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 270 aggagaaagtccgtccgtggttgcattgtcagcc 303 ||||||||||| ||||| |||||||||||||||| Sbjct: 89689 aggagaaagtctgtccgcggttgcattgtcagcc 89656
>ref|XM_329546.1| Neurospora crassa OR74A hypothetical protein (NCU08502.1) partial mRNA Length = 720 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 261 ggtgagcgcaggagaaagtccgtccgtggttgcat 295 |||||||||| ||||||||||||||| |||||||| Sbjct: 268 ggtgagcgcaagagaaagtccgtccgcggttgcat 302
>ref|XM_958338.1| Neurospora crassa OR74A hypothetical protein (NCU08502.1) partial mRNA Length = 720 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 261 ggtgagcgcaggagaaagtccgtccgtggttgcat 295 |||||||||| ||||||||||||||| |||||||| Sbjct: 268 ggtgagcgcaagagaaagtccgtccgcggttgcat 302
>emb|BX842594.1| Neurospora crassa DNA linkage group II BAC clone B18P7 Length = 95637 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 261 ggtgagcgcaggagaaagtccgtccgtggttgcat 295 |||||||||| ||||||||||||||| |||||||| Sbjct: 44726 ggtgagcgcaagagaaagtccgtccgcggttgcat 44692
>ref|XM_447041.1| Candida glabrata CBS138, CAGL0H05643g partial mRNA Length = 711 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Plus Query: 111 ggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttc 170 ||||| |||||||||||||| | ||||||||||| ||||| || ||||| || ||| Sbjct: 124 ggtgatgaattcaagggttacaccttcaagatcaccggtggtaacgacaagcaaggtttc 183 Query: 171 ccaatgaagcaagg 184 |||||||||||||| Sbjct: 184 ccaatgaagcaagg 197
>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence Length = 1050361 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Plus Query: 111 ggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttc 170 ||||| |||||||||||||| | ||||||||||| ||||| || ||||| || ||| Sbjct: 560268 ggtgatgaattcaagggttacaccttcaagatcaccggtggtaacgacaagcaaggtttc 560327 Query: 171 ccaatgaagcaagg 184 |||||||||||||| Sbjct: 560328 ccaatgaagcaagg 560341
>ref|XM_360693.1| Magnaporthe grisea 70-15 hypothetical protein (MG03236.4) partial mRNA Length = 720 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 260 tggtgagcgcaggagaaagtccgtccgtggttg 292 ||||||||||| ||||||||||||||| ||||| Sbjct: 267 tggtgagcgcaagagaaagtccgtccgcggttg 299
>ref|XM_660817.1| Cryptosporidium hominis TU502 ribosomal protein S6e (Chro.20458) partial mRNA Length = 666 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Plus Query: 109 tgggtgaggaattcaagggttatat 133 ||||||||||||||||||||||||| Sbjct: 122 tgggtgaggaattcaagggttatat 146
>gb|AC146855.5| Medicago truncatula clone mth2-16c23, complete sequence Length = 137979 Score = 50.1 bits (25), Expect = 0.004 Identities = 79/97 (81%) Strand = Plus / Minus Query: 115 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 174 ||||||| ||||| ||| ||||||| |||| ||||| ||||| || || ||||| |||| Sbjct: 136820 aggaatttaagggatatgtcttcaaaatcactggtggatgtgacaaacaaggctttccaa 136761 Query: 175 tgaagcaaggagtgctaacttctgggcgtgtccgcct 211 ||||||| || ||| |||| |||| ||||| ||||| Sbjct: 136760 tgaagcagggtgtgttaacccctggtcgtgttcgcct 136724 Score = 48.1 bits (24), Expect = 0.016 Identities = 45/52 (86%) Strand = Plus / Minus Query: 252 aggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 ||||||||||| ||||| || || ||||| || ||||| ||||||||||||| Sbjct: 135731 aggcgtaatggagagcgaagaaggaagtctgttcgtgggtgcattgtcagcc 135680
>gb|AC149801.3| Medicago truncatula chromosome 2 BAC clone mth2-32i15, complete sequence Length = 96221 Score = 50.1 bits (25), Expect = 0.004 Identities = 79/97 (81%) Strand = Plus / Plus Query: 115 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 174 ||||||| ||||| ||| ||||||| |||| ||||| ||||| || || ||||| |||| Sbjct: 92733 aggaatttaagggatatgtcttcaaaatcactggtggatgtgacaaacaaggctttccaa 92792 Query: 175 tgaagcaaggagtgctaacttctgggcgtgtccgcct 211 ||||||| || ||| |||| |||| ||||| ||||| Sbjct: 92793 tgaagcagggtgtgttaacccctggtcgtgttcgcct 92829 Score = 48.1 bits (24), Expect = 0.016 Identities = 45/52 (86%) Strand = Plus / Plus Query: 252 aggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 303 ||||||||||| ||||| || || ||||| || ||||| ||||||||||||| Sbjct: 93822 aggcgtaatggagagcgaagaaggaagtctgttcgtgggtgcattgtcagcc 93873
>ref|XM_626605.1| Cryptosporidium parvum Iowa II 40S ribosomal protein S6 (cgd2_4260), partial mRNA Length = 678 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Plus Query: 109 tgggtgaggaattcaagggttatat 133 ||||||||||||||||||||||||| Sbjct: 134 tgggtgaggaattcaagggttatat 158
>ref|XM_746654.1| Aspergillus fumigatus Af293 40S ribosomal protein S6 (Afu4g10800) partial mRNA Length = 714 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Plus Query: 111 ggtgaggaattcaagggttatatcttcaagat 142 ||||| |||||||||||||| ||||||||||| Sbjct: 124 ggtgatgaattcaagggttacatcttcaagat 155
>ref|XM_380810.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein (FG00634.1) partial mRNA Length = 714 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Plus Query: 260 tggtgagcgcaggagaaagtccgtccgtggttgcat 295 ||||||||||| ||||||||| |||||||| ||||| Sbjct: 261 tggtgagcgcaagagaaagtctgtccgtggctgcat 296
>ref|NM_061034.3| Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-6) (rps-6) mRNA, complete cds Length = 806 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Plus Query: 264 gagcgcaggagaaagtccgtccgtggttgcat 295 ||||||| |||||||||||||||||| ||||| Sbjct: 290 gagcgcaagagaaagtccgtccgtggatgcat 321 Score = 46.1 bits (23), Expect = 0.064 Identities = 26/27 (96%) Strand = Plus / Plus Query: 159 aagcagggcttcccaatgaagcaagga 185 |||||||| |||||||||||||||||| Sbjct: 191 aagcagggattcccaatgaagcaagga 217
>emb|AL132902.4|CEY71A12B Caenorhabditis elegans YAC Y71A12B, complete sequence Length = 137184 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Plus Query: 264 gagcgcaggagaaagtccgtccgtggttgcat 295 ||||||| |||||||||||||||||| ||||| Sbjct: 84063 gagcgcaagagaaagtccgtccgtggatgcat 84094 Score = 46.1 bits (23), Expect = 0.064 Identities = 26/27 (96%) Strand = Plus / Plus Query: 159 aagcagggcttcccaatgaagcaagga 185 |||||||| |||||||||||||||||| Sbjct: 83964 aagcagggattcccaatgaagcaagga 83990
>emb|AL928597.19| Mouse DNA sequence from clone RP23-373N5 on chromosome 4, complete sequence Length = 163961 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Plus Query: 145 tgggtggctgtgataagcagggct 168 |||||||||||||||||||||||| Sbjct: 150128 tgggtggctgtgataagcagggct 150151
>gb|AF402814.1| Ictalurus punctatus 40S ribosomal protein S6 mRNA, complete cds Length = 819 Score = 46.1 bits (23), Expect = 0.064 Identities = 26/27 (96%) Strand = Plus / Plus Query: 155 tgataagcagggcttcccaatgaagca 181 |||||||||||||||||| |||||||| Sbjct: 192 tgataagcagggcttccccatgaagca 218
>ref|NM_205225.1| Gallus gallus ribosomal protein S6 (RPS6), mRNA Length = 894 Score = 46.1 bits (23), Expect = 0.064 Identities = 53/63 (84%) Strand = Plus / Plus Query: 155 tgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttct 214 |||||| || |||||||| |||||||| || || || ||| ||| |||||||||||||| Sbjct: 187 tgataaacaaggcttccccatgaagcagggtgtccttactcatggacgtgtccgccttct 246 Query: 215 gct 217 ||| Sbjct: 247 gct 249
>emb|X81968.1|GGRPRTS6 G.gallus mRNA for ribosomal protein S6 Length = 894 Score = 46.1 bits (23), Expect = 0.064 Identities = 53/63 (84%) Strand = Plus / Plus Query: 155 tgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttct 214 |||||| || |||||||| |||||||| || || || ||| ||| |||||||||||||| Sbjct: 187 tgataaacaaggcttccccatgaagcagggtgtccttactcatggacgtgtccgccttct 246 Query: 215 gct 217 ||| Sbjct: 247 gct 249
>gb|AF208228.1|AF208228 Gallus gallus ribosomal protein S6 mRNA, partial cds Length = 814 Score = 46.1 bits (23), Expect = 0.064 Identities = 53/63 (84%) Strand = Plus / Plus Query: 155 tgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttct 214 |||||| || |||||||| |||||||| || || || ||| ||| |||||||||||||| Sbjct: 164 tgataaacaaggcttccccatgaagcagggtgtccttactcatggacgtgtccgccttct 223 Query: 215 gct 217 ||| Sbjct: 224 gct 226
>ref|XM_654476.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1964.2), mRNA Length = 714 Score = 44.1 bits (22), Expect = 0.25 Identities = 31/34 (91%) Strand = Plus / Plus Query: 111 ggtgaggaattcaagggttatatcttcaagatca 144 ||||| |||||||||||||| |||||||||||| Sbjct: 124 ggtgacgaattcaagggttacctcttcaagatca 157
>ref|XM_449621.1| Candida glabrata CBS138 hypothetical protein (CAGL0M06303g) partial mRNA Length = 711 Score = 44.1 bits (22), Expect = 0.25 Identities = 61/74 (82%) Strand = Plus / Plus Query: 111 ggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttc 170 ||||| |||||||||||||| | ||||||||| | ||||| || ||||| || ||| Sbjct: 124 ggtgatgaattcaagggttacaccttcaagattaccggtggtaacgacaagcaaggtttc 183 Query: 171 ccaatgaagcaagg 184 |||||||||||||| Sbjct: 184 ccaatgaagcaagg 197
>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence Length = 1400893 Score = 44.1 bits (22), Expect = 0.25 Identities = 61/74 (82%) Strand = Plus / Minus Query: 111 ggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttc 170 ||||| |||||||||||||| | ||||||||| | ||||| || ||||| || ||| Sbjct: 654593 ggtgatgaattcaagggttacaccttcaagattaccggtggtaacgacaagcaaggtttc 654534 Query: 171 ccaatgaagcaagg 184 |||||||||||||| Sbjct: 654533 ccaatgaagcaagg 654520
>emb|BX832457.1|CNS0A241 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH74ZH01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 689 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 274 gaaagtccgtccgtggttgcattgtcagcc 303 ||||||| ||||||||||||||||| |||| Sbjct: 33 gaaagtctgtccgtggttgcattgtgagcc 62
>gb|BC061628.1| Xenopus tropicalis 40S ribosomal protein S6, mRNA (cDNA clone MGC:76307 IMAGE:5379757), complete cds Length = 846 Score = 42.1 bits (21), Expect = 1.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 155 tgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttct 214 ||||||||| ||||| || ||||| || |||||||||||| ||| ||||| || ||||| Sbjct: 198 tgataagcaaggctttcccatgaaacagggagtgctaactcatggccgtgttcgtcttct 257 Query: 215 g 215 | Sbjct: 258 g 258
>emb|AL445208.11| Human DNA sequence from clone RP11-104N3 on chromosome 6, complete sequence Length = 60742 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 aggaggtagttggtgatcttc 108 ||||||||||||||||||||| Sbjct: 14137 aggaggtagttggtgatcttc 14157
>emb|AL353193.7| Human DNA sequence from clone RP11-137F15 on chromosome 20 Contains a pseudogene similar to a TCEAL1 (transcription elongation factor A (SII)-like 1, the 5' part of the ATRN gene for attractin with dipeptidylpeptidase IV activity and a CpG island, complete sequence Length = 51371 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 159 aagcagggcttcccaatgaag 179 ||||||||||||||||||||| Sbjct: 27357 aagcagggcttcccaatgaag 27377
>gb|BC082345.1| Xenopus tropicalis 40S ribosomal protein S6, mRNA (cDNA clone MGC:79740 IMAGE:6983051), complete cds Length = 835 Score = 42.1 bits (21), Expect = 1.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 155 tgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttct 214 ||||||||| ||||| || ||||| || |||||||||||| ||| ||||| || ||||| Sbjct: 191 tgataagcaaggctttcccatgaaacagggagtgctaactcatggccgtgttcgtcttct 250 Query: 215 g 215 | Sbjct: 251 g 251
>ref|NM_203821.1| Xenopus tropicalis 40S ribosomal protein S6 (MGC76307), mRNA Length = 846 Score = 42.1 bits (21), Expect = 1.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 155 tgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttct 214 ||||||||| ||||| || ||||| || |||||||||||| ||| ||||| || ||||| Sbjct: 198 tgataagcaaggctttcccatgaaacagggagtgctaactcatggccgtgttcgtcttct 257 Query: 215 g 215 | Sbjct: 258 g 258
>gb|AF429980.1| Spodoptera frugiperda ribosomal protein S6 mRNA, complete cds Length = 842 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 159 aagcagggcttcccaatgaagcaaggagt 187 |||||||||||||| |||||||| ||||| Sbjct: 190 aagcagggcttccccatgaagcagggagt 218
>emb|X02746.1|SCRPS102 Yeast gene for ribosomal protein S10-2 Length = 1500 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 111 ggtgaggaattcaagggttatatcttcaagatc 143 ||||| |||||||||||||| ||||||||||| Sbjct: 673 ggtgacgaattcaagggttacgtcttcaagatc 705
>emb|CR760876.2| Xenopus tropicalis finished cDNA, clone TTpA006h06 Length = 824 Score = 42.1 bits (21), Expect = 1.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 155 tgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttct 214 ||||||||| ||||| || ||||| || |||||||||||| ||| ||||| || ||||| Sbjct: 185 tgataagcaaggctttcccatgaaacagggagtgctaactcatggccgtgttcgtcttct 244 Query: 215 g 215 | Sbjct: 245 g 245
>gb|DQ332961.1| Synthetic construct Saccharomyces cerevisiae clone FLH113093.01X RPS6A gene, complete sequence Length = 1105 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 111 ggtgaggaattcaagggttatatcttcaagatc 143 ||||| |||||||||||||| ||||||||||| Sbjct: 518 ggtgacgaattcaagggttacgtcttcaagatc 550
>gb|U43281.1|SCU43281 Saccharomyces cerevisiae chromosome XVI cosmid 8059/8047 Length = 38669 Score = 42.1 bits (21), Expect = 1.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 111 ggtgaggaattcaagggttatatcttcaagatc 143 ||||| |||||||||||||| ||||||||||| Sbjct: 29482 ggtgacgaattcaagggttacgtcttcaagatc 29450
>gb|AY308769.1| Bothus lunatus recombinase activating gene-1 (RAG1) gene, partial cds Length = 1455 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ggaggtagttggtgatcttc 108 |||||||||||||||||||| Sbjct: 1315 ggaggtagttggtgatcttc 1296
>gb|AY190727.1| Pagrus major S6 ribosomal protein mRNA, partial cds Length = 564 Score = 40.1 bits (20), Expect = 4.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 159 aagcagggcttcccaatgaagcaaggagtgct 190 |||||||||||||| |||||||| || ||||| Sbjct: 146 aagcagggcttccccatgaagcagggtgtgct 177
>gb|AY430215.1| Spirinchus thaleichthys recombination activating protein 1 (RAG1) gene, partial cds Length = 1472 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ggaggtagttggtgatcttc 108 |||||||||||||||||||| Sbjct: 1335 ggaggtagttggtgatcttc 1316
>gb|AY380539.1| Salangichthys microdon recombination-activating protein 1 (RAG1) gene, partial cds Length = 1506 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ggaggtagttggtgatcttc 108 |||||||||||||||||||| Sbjct: 1342 ggaggtagttggtgatcttc 1323
>gb|AY380538.1| Hypomesus olidus recombination-activating protein 1 (RAG1) gene, partial cds Length = 1555 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ggaggtagttggtgatcttc 108 |||||||||||||||||||| Sbjct: 1364 ggaggtagttggtgatcttc 1345
>gb|AY380537.1| Thaleichthys pacificus recombination-activating protein 1 (RAG1) gene, partial cds Length = 1556 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ggaggtagttggtgatcttc 108 |||||||||||||||||||| Sbjct: 1365 ggaggtagttggtgatcttc 1346
>gb|AY380536.1| Plecoglossus altivelis recombination-activating protein 1 (RAG1) gene, partial cds Length = 1556 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ggaggtagttggtgatcttc 108 |||||||||||||||||||| Sbjct: 1365 ggaggtagttggtgatcttc 1346
>ref|NM_012652.1| Rattus norvegicus solute carrier family 9, member 1 (Slc9a1), mRNA Length = 4581 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aggtagttggtgatcttctg 110 |||||||||||||||||||| Sbjct: 2824 aggtagttggtgatcttctg 2805
>ref|XM_455035.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E24090g predicted mRNA Length = 711 Score = 40.1 bits (20), Expect = 4.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 111 ggtgaggaattcaagggttatatcttcaagat 142 ||||| |||||||||||||| |||||||||| Sbjct: 124 ggtgatgaattcaagggttacgtcttcaagat 155
>ref|NM_016981.1| Mus musculus solute carrier family 9 (sodium/hydrogen exchanger), member 1 (Slc9a1), mRNA Length = 4126 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aggtagttggtgatcttctg 110 |||||||||||||||||||| Sbjct: 2378 aggtagttggtgatcttctg 2359
>gb|BC052708.1| Mus musculus solute carrier family 9 (sodium/hydrogen exchanger), member 1, mRNA (cDNA clone MGC:64648 IMAGE:5702902), complete cds Length = 3907 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aggtagttggtgatcttctg 110 |||||||||||||||||||| Sbjct: 2717 aggtagttggtgatcttctg 2698
>gb|BC051431.1| Mus musculus solute carrier family 9 (sodium/hydrogen exchanger), member 1, mRNA (cDNA clone MGC:58902 IMAGE:6529306), complete cds Length = 3989 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aggtagttggtgatcttctg 110 |||||||||||||||||||| Sbjct: 2182 aggtagttggtgatcttctg 2163
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2234072 Score = 40.1 bits (20), Expect = 4.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 111 ggtgaggaattcaagggttatatcttcaagat 142 ||||| |||||||||||||| |||||||||| Sbjct: 2142829 ggtgatgaattcaagggttacgtcttcaagat 2142860
>gb|AC101986.10| Mus musculus chromosome 7, clone RP24-353K18, complete sequence Length = 187803 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 ctgggtgaggaattcaaggg 127 |||||||||||||||||||| Sbjct: 16174 ctgggtgaggaattcaaggg 16155
>gb|AC158574.6| Mus musculus chromosome 7, clone RP24-275O6, complete sequence Length = 160525 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 ctgggtgaggaattcaaggg 127 |||||||||||||||||||| Sbjct: 68236 ctgggtgaggaattcaaggg 68255
>dbj|AK154857.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630109M11 product:solute carrier family 9 (sodium/hydrogen exchanger), member 1, full insert sequence Length = 4191 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aggtagttggtgatcttctg 110 |||||||||||||||||||| Sbjct: 2872 aggtagttggtgatcttctg 2853
>dbj|AK150135.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530135M05 product:solute carrier family 9 (sodium/hydrogen exchanger), member 1, full insert sequence Length = 4609 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aggtagttggtgatcttctg 110 |||||||||||||||||||| Sbjct: 2838 aggtagttggtgatcttctg 2819
>dbj|AK162209.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420457F09 product:solute carrier family 9 (sodium/hydrogen exchanger), member 1, full insert sequence Length = 1624 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aggtagttggtgatcttctg 110 |||||||||||||||||||| Sbjct: 166 aggtagttggtgatcttctg 147
>emb|AJ504414.1|KLA504414 Kluyveromyces lactis glr1 gene for putative glutathione oxidoreductase and partial rps6 gene for putative 40S ribosomal protein S6 Length = 3674 Score = 40.1 bits (20), Expect = 4.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 111 ggtgaggaattcaagggttatatcttcaagat 142 ||||| |||||||||||||| |||||||||| Sbjct: 3600 ggtgatgaattcaagggttacgtcttcaagat 3569
>gb|AY521658.1| Pseudopleuronectes americanus 40S ribosomal protein S6 (RPS6) mRNA, partial cds Length = 550 Score = 40.1 bits (20), Expect = 4.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 159 aagcagggcttcccaatgaagcaaggagtgct 190 |||||||||||||| |||||||| || ||||| Sbjct: 97 aagcagggcttccccatgaagcagggtgtgct 128
>gb|S53430.1| S10=ribosomal protein [Kluyveromyces marxianus, Genomic, 1894 nt] Length = 1894 Score = 40.1 bits (20), Expect = 4.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 111 ggtgaggaattcaagggttatatcttcaagat 142 ||||| |||||||||||||| |||||||||| Sbjct: 1219 ggtgatgaattcaagggttacgtcttcaagat 1250
>gb|BC004687.1| Mus musculus solute carrier family 9 (sodium/hydrogen exchanger), member 1, mRNA (cDNA clone IMAGE:3500839), partial cds Length = 1833 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aggtagttggtgatcttctg 110 |||||||||||||||||||| Sbjct: 42 aggtagttggtgatcttctg 23
>gb|AC068715.5|AC068715 Homo sapiens chromosome 2 clone RP11-319N5, complete sequence Length = 161375 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 caatgaagcaaggagtgctaactt 195 |||||||||||||| ||||||||| Sbjct: 80580 caatgaagcaaggaatgctaactt 80603
>gb|AC157521.2| Mus musculus BAC clone RP23-103M13 from chromosome 15, complete sequence Length = 194306 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gaatctcccaggaggtagtt 98 |||||||||||||||||||| Sbjct: 94900 gaatctcccaggaggtagtt 94881
>gb|AY130373.1| Petromyzon marinus ribosomal protein S6-like mRNA, partial sequence Length = 691 Score = 40.1 bits (20), Expect = 4.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 159 aagcagggcttcccaatgaagcaaggagtgct 190 |||||||||||||| |||||||| || ||||| Sbjct: 146 aagcagggcttccccatgaagcagggcgtgct 177
>dbj|AK109085.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-H09, full insert sequence Length = 1049 Score = 40.1 bits (20), Expect = 4.0 Identities = 65/80 (81%) Strand = Plus / Plus Query: 111 ggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttc 170 ||||| || |||||||| || |||||||||||||||| || || |||||||| ||| Sbjct: 186 ggtgacgagttcaagggctacgtcttcaagatcatgggaggacaggacaagcagggtttc 245 Query: 171 ccaatgaagcaaggagtgct 190 || |||||||| || ||||| Sbjct: 246 cccatgaagcagggtgtgct 265 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 accccaccacggggtgccagaaga 29 |||||||||||||| ||||||||| Sbjct: 82 accccaccacggggcgccagaaga 105
>dbj|AK108193.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C04, full insert sequence Length = 993 Score = 40.1 bits (20), Expect = 4.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 260 tggtgagcgcaggagaaagtccgtccgtggttgcat 295 ||||||||||| | | |||||||||||||| ||||| Sbjct: 317 tggtgagcgcaagcgcaagtccgtccgtggctgcat 352
>gb|AF009665.1|AF009665 Oncorhynchus mykiss S6 ribosomal protein mRNA, complete cds Length = 805 Score = 40.1 bits (20), Expect = 4.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 159 aagcagggcttcccaatgaagcaaggagtgct 190 |||||||||||||| |||||||| || ||||| Sbjct: 175 aagcagggcttccccatgaagcagggtgtgct 206
>gb|M85299.1|RATNHEXI Rat sodium/hydrogen exchange protein-isoform 1 (NHE-1) mRNA, complete cds Length = 4581 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aggtagttggtgatcttctg 110 |||||||||||||||||||| Sbjct: 2824 aggtagttggtgatcttctg 2805
>gb|U51112.1|MMU51112 Mus musculus Na+/H+ exchanger (NHE-1) mRNA, complete cds Length = 4126 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aggtagttggtgatcttctg 110 |||||||||||||||||||| Sbjct: 2378 aggtagttggtgatcttctg 2359 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,092,176 Number of Sequences: 3902068 Number of extensions: 2092176 Number of successful extensions: 31910 Number of sequences better than 10.0: 105 Number of HSP's better than 10.0 without gapping: 103 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 31700 Number of HSP's gapped (non-prelim): 203 length of query: 303 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 281 effective length of database: 17,147,199,772 effective search space: 4818363135932 effective search space used: 4818363135932 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
