ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags31e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL28_DROME (Q9VZS5) 60S ribosomal protein L28 34 0.24
2RL28_DICDI (Q9GS21) 60S ribosomal protein L28 29 6.0
3MYB_HUMAN (P10242) Myb proto-oncogene protein (C-myb) 29 7.8
4CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzym... 29 7.8

>RL28_DROME (Q9VZS5) 60S ribosomal protein L28|
          Length = 144

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +2

Query: 239 RKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKSGVKK 370
           R+  K +KN +  + YR DLT+ AL R SAV RS + A    KK
Sbjct: 91  RRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKK 134



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 60  PNNLYNVHSYKYSGLANK 113
           PNNL +V SY+YSG+ +K
Sbjct: 33  PNNLASVSSYRYSGIVHK 50



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>RL28_DICDI (Q9GS21) 60S ribosomal protein L28|
          Length = 132

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 60  PNNLYNVHSYKYSGLANKXDCDGAA 134
           P NL N +S KYSGLA +   D AA
Sbjct: 29  PGNLRNKNSLKYSGLARRTTIDVAA 53



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>MYB_HUMAN (P10242) Myb proto-oncogene protein (C-myb)|
          Length = 640

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 422 THPQNK-LTSPSVLTACSSS*HQTWQPGGCGKLRSVLQEQAWSSQA 288
           T P+N+ L SP  L  CSS    TW+P  CGK+    ++   SSQA
Sbjct: 590 TVPKNRSLASP--LQPCSS----TWEPASCGKME---EQMTSSSQA 626



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>CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)|
           (pro-ANP-converting enzyme) (Corin) (Heart-specific
           serine proteinase ATC2) (Transmembrane protease, serine
           10)
          Length = 1042

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +3

Query: 120 CDGAACC*EGDD---CGPLHNQVKEAEQACGLHPQXLSCARSS 239
           CDG   C +G D   C  +    +E +Q C  +P   SC  SS
Sbjct: 399 CDGDEDCKDGSDEENCSVIQTSCQEGDQRCLYNPCLDSCGGSS 441


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.128    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,261,137
Number of Sequences: 219361
Number of extensions: 826111
Number of successful extensions: 2031
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2031
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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