ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31d23 |
|---|---|
| Clone Library Name | barley_pub |
>CU124_HUMAN (Q96HW9) Protein C21orf124| Length = 162 Score = 34.3 bits (77), Expect = 0.28 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = -1 Query: 574 ASPPTTCSKMIAASIYINKCCAQFNQGIRPNTESTIYMCTRPAPRSKSKF--ASWLYYSN 401 A PP+ C +A + CC+ F RP S RP + +S F SW + S Sbjct: 33 ADPPSACRAHLAQASPPRGCCSHFCPFPRPGPRS-----LRPYHKVRSFFHTVSWAWQSL 87 Query: 400 HLVAS 386 HLVAS Sbjct: 88 HLVAS 92
>LARP_DROME (Q9VAW5) La-related protein (dlarp)| Length = 1403 Score = 32.3 bits (72), Expect = 1.1 Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 15/135 (11%) Frame = -2 Query: 540 QHPSTSINVVHSSIRVSGQILNLLFTCARD-------PPHDPNRNSRHGYIIRTIS*HPI 382 +H S S + + I G+ LN T D H + +H H Sbjct: 1237 RHRSVSESDGTAVIAAGGRRLNTTITNRSDYVGRLLQQQHQQQQQQQH---------HQY 1287 Query: 381 QHNYFGGLNLHRNLERILRFGSAQLALQPGT--------NPDTHKKRGLDRSGTSPNSVR 226 Q Y GG N +N R FGS + ++ G+ N + + L R G++ Sbjct: 1288 QQGY-GGYNQQQNRRRTGSFGSTTVRIRSGSLGNKPQVANRNQGSQHELRRGGSNSGLAP 1346 Query: 225 SHKQQQLKLGAGSGS 181 +QQQ K G+GS Sbjct: 1347 HKRQQQQKPKPGAGS 1361
>TR150_RAT (Q5M7V8) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 32.3 bits (72), Expect = 1.1 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 390 HPIQHNYFG--GLNLHRNLERILRFGSAQLALQPGTNPDTHKKRGLDRSGTSPNSVRSH 220 H ++ ++FG G+ LH + L+ G+ Q A + +P+ H+ R SP++ R H Sbjct: 633 HHVKEHHFGSSGMTLHERFTKYLKRGNEQEAAKTKKSPEIHR-----RIDISPSTFRKH 686
>TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 955 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 390 HPIQHNYFG--GLNLHRNLERILRFGSAQLALQPGTNPDTHKKRGLDRSGTSPNSVRSH 220 H ++ ++FG G+ LH + L+ G+ Q A + +P+ H+ R SP++ R H Sbjct: 636 HHVKEHHFGSSGMTLHERFTKYLKRGTEQEAAKNKKSPEIHR-----RIDISPSTFRKH 689
>TR150_XENLA (Q5BJ39) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 390 HPIQHNYFG--GLNLHRNLERILRFGSAQLALQPGTNPDTHKKRGLDRSGTSPNSVRSH 220 H ++ ++FG G+ LH + L+ G+ Q A + +P+ H+ R SP++ R H Sbjct: 633 HHVKEHHFGSSGMTLHERFTKYLKRGNEQEAAKNKKSPEIHR-----RIDISPSTFRKH 686
>TR150_MOUSE (Q569Z6) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -2 Query: 390 HPIQHNYFG--GLNLHRNLERILRFGSAQLALQPGTNPDTHKKRGLDRSGTSPNSVRSH 220 H ++ ++FG G+ LH + L+ G+ Q A + +P+ H+ R SP++ R H Sbjct: 633 HHVKEHHFGSSGMTLHERFTKYLKRGNEQEAAKNKKSPEIHR-----RIDISPSTFRKH 686
>PYRD_DEIRA (Q9RX14) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 369 Score = 31.2 bits (69), Expect = 2.3 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 14/61 (22%) Frame = -3 Query: 197 APDLDLANF--------------LIQANIRTPRAKNGIAHRNRQRAAAISHQPRTDRTRQ 60 APDL A+F LI +N T ++ G++H NR++A +S +P TDR+ + Sbjct: 234 APDLHPADFEASVGAVLDAGASGLIISN--TTLSRGGLSHPNREQAGGLSGRPLTDRSTE 291 Query: 59 V 57 + Sbjct: 292 L 292
>MYOA_PLAFB (Q9UAR6) Myosin A (PfM-A)| Length = 818 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +2 Query: 161 PGLGNSLDPDPAPSFNCCCLCDLTEFGDVPDRSNPLFLCVSGFV 292 PG G D DP ++NC D FGD+ ++ CV F+ Sbjct: 74 PGTGTPYDIDPTHAWNCNSQVDPMSFGDIGLLNHTNIPCVLDFL 117
>MYOA_PLAF7 (Q8IDR3) Myosin A (PfM-A)| Length = 818 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +2 Query: 161 PGLGNSLDPDPAPSFNCCCLCDLTEFGDVPDRSNPLFLCVSGFV 292 PG G D DP ++NC D FGD+ ++ CV F+ Sbjct: 74 PGTGTPYDIDPTHAWNCNSQVDPMSFGDIGLLNHTNIPCVLDFL 117
>SYT_CHLTE (Q8KAN0) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 657 Score = 30.0 bits (66), Expect = 5.2 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Frame = -1 Query: 487 PNTEST-IYMCTRPAPRSKSKFASWLYYSNHLVASHTAQLFWGAQFAPQPGTNPSIWVGS 311 P TE+ + + T +P K F W + S+HL+A +LF GA+F P + Sbjct: 59 PVTENARVSIITFDSPEGKEIF--W-HSSSHLMAHAIEELFPGAKFGAGPAIEQGFYYDI 115 Query: 310 TCTTTWNE 287 C +NE Sbjct: 116 ACEHRFNE 123
>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)| Length = 3124 Score = 30.0 bits (66), Expect = 5.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +3 Query: 93 DCCCSLPISMRDPVFCPRRPDVC 161 D CC LP SMRD CP P+ C Sbjct: 2722 DRCCDLP-SMRDEAKCPALPNAC 2743
>BKRB2_CAVPO (O70526) B2 bradykinin receptor (BK-2 receptor) (B2R)| Length = 372 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = +3 Query: 231 RNSAMCLTDLILSFCVCQDSFQVVVQVEPTQIEGFVPGC 347 R + + + ++L F VC FQ+ ++ ++ GF+PGC Sbjct: 240 RRATVLVLAVLLLFVVCWLPFQIGTFLDTLRLLGFLPGC 278 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,270,191 Number of Sequences: 219361 Number of extensions: 2101734 Number of successful extensions: 5255 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5068 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5252 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
