Clone Information

BLAST Search Result

Clone Name	bags30o19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncologic...	64	1e-10
2	NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological...	63	2e-10
3	NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncologic...	54	1e-07
4	PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Put...	50	1e-06
5	NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncologic...	50	1e-06
6	PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnR...	50	1e-06
7	PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	48	7e-06
8	PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	48	7e-06
9	PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	48	7e-06
10	PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)	47	9e-06
11	PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)	47	9e-06
12	PBP2_YEAST (P38151) PAB1-binding protein 2	47	9e-06
13	FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUS...	43	2e-04
14	FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUS...	42	5e-04
15	TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein	41	9e-04
16	TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein	41	9e-04
17	PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)	40	0.002
18	HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC...	39	0.003
19	HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (...	39	0.003
20	HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K	39	0.003
21	HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (...	39	0.003
22	PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)	39	0.004
23	FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-...	38	0.007
24	FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUS...	38	0.007
25	ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2	37	0.012
26	FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUS...	37	0.012
27	YBD2_YEAST (P38199) Hypothetical 41.7 kDa protein in RIB1-AAC2 i...	36	0.021
28	Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g1...	36	0.021
29	DDX23_HUMAN (Q9BUQ8) Probable ATP-dependent RNA helicase DDX23 (...	32	0.31
30	DDX23_PONPY (Q5RC67) Probable ATP-dependent RNA helicase DDX23 (...	31	0.69
31	VIGLN_CHICK (P81021) Vigilin	30	2.0
32	FMT_RICTY (O33582) Methionyl-tRNA formyltransferase (EC 2.1.2.9)	30	2.0
33	FMT_RICPR (P50932) Methionyl-tRNA formyltransferase (EC 2.1.2.9)	30	2.0
34	YQK1_CAEEL (Q09285) Hypothetical protein C56G2.1 in chromosome III	29	3.4
35	VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding p...	28	4.4
36	ECR1_PYRKO (Q5JIR5) Probable exosome complex RNA-binding protein 1	28	5.8
37	PRD16_HUMAN (Q9HAZ2) PR domain zinc finger protein 16 (PR domain...	28	7.6
38	AP3B_YEAST (P46682) AP-3 complex subunit beta (Beta-adaptin) (Ad...	28	7.6
39	VIGLN_RAT (Q9Z1A6) Vigilin (High density lipoprotein-binding pro...	28	7.6
40	VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding p...	28	7.6
41	HTXA_PSEST (O69060) Probable alpha-ketoglutarate-dependent hypop...	27	9.9

>NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncological ventral|
           antigen 2) (Astrocytic NOVA1-like RNA-binding protein)
          Length = 492

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 14/119 (11%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL--- 171
           +IGKGG TI   Q ++GA I+LS+S +F+PGT +R+ +V G  + +      + EK+   
Sbjct: 47  IIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREI 106

Query: 172 -----------LSEGEESNEAEARPKFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGIK 315
                      + + + +   +   + +L+VPNS+         AT+K+ +E S A ++
Sbjct: 107 PQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQ 165



 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 22/60 (36%), Positives = 38/60 (63%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           ++GKGG T+ ++Q  +GARIQ+S+  EF PGT +R + ++G       A  L+ +++  E
Sbjct: 421 ILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 480



 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 23/65 (35%), Positives = 41/65 (63%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IGKGG+T+     QSGA +QLS+  E      +R++ VSG  ++V KA+  +++K+  +
Sbjct: 145 IIGKGGATVKAVMEQSGAWVQLSQKPEGI-NLQERVVTVSGEPEQVHKAVSAIVQKVQED 203

Query: 181 GEESN 195
            + S+
Sbjct: 204 PQSSS 208

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>NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Fragment)
          Length = 474

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 16/121 (13%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IGKGG TI   Q ++GA I+LS+S +F+PGT +R+ ++ G  + +      + EK+   
Sbjct: 63  IIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREM 122

Query: 181 GEESNEAEARP----------------KFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGI 312
            +  N A+  P                + +++VPNS+         AT+K+ +E S A +
Sbjct: 123 PQ--NVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWV 180

Query: 313 K 315
           +
Sbjct: 181 Q 181



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 38/60 (63%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           ++GKGG T+ ++Q  +GARIQ+S+  EF PGT +R + ++G       A  L+ +++  E
Sbjct: 411 ILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYE 470



 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 22/65 (33%), Positives = 41/65 (63%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IGKGG+T+     QSGA +QLS+  +      +R++ VSG  ++  KA+EL+++K+  +
Sbjct: 161 IIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNRKAVELIIQKIQED 219

Query: 181 GEESN 195
            +  +
Sbjct: 220 PQSGS 224

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>NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Ventral neuron-specific protein 1)
           (Fragment)
          Length = 493

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 40/145 (27%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IGKGG TI   Q ++GA I+LS+S +F+PGT +R+ ++ G  + +      + EK+   
Sbjct: 50  IIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREM 109

Query: 181 GEESNEAEARP----------------------------------------KFRLVVPNS 240
            +  N A+  P                                        + +++VPNS
Sbjct: 110 PQ--NVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNS 167

Query: 241 SCXXXXXXXXATIKSFIEDSHAGIK 315
           +         AT+K+ +E S A ++
Sbjct: 168 TAGLIIGKGGATVKAIMEQSGAWVQ 192



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 38/60 (63%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           ++GKGG T+ ++Q  +GARIQ+S+  EF PGT +R + ++G       A  L+ +++  E
Sbjct: 422 ILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYE 481



 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 22/65 (33%), Positives = 41/65 (63%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IGKGG+T+     QSGA +QLS+  +      +R++ VSG  ++  KA+EL+++K+  +
Sbjct: 172 IIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNRKAVELIIQKIQED 230

Query: 181 GEESN 195
            +  +
Sbjct: 231 PQSGS 235

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>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative|
           heterogeneous nuclear ribonucleoprotein X) (hnRNP X)
           (CTBP) (CBP)
          Length = 362

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL--- 171
           +IGK G ++   + +SGARI +S  +       +RII ++G  + + KA  ++++KL   
Sbjct: 28  IIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFKAFAMIIDKLEED 82

Query: 172 LSEGEESNEAEARP--KFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGIK 315
           +S    ++ A +RP    RLVVP S C          IK   E + A ++
Sbjct: 83  ISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQ 132



 Score = 35.0 bits (79), Expect = 0.047
 Identities = 19/60 (31%), Positives = 35/60 (58%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG+ G+ IN+ +  SGA+I+++   E   G+ DR + ++G    +  A  L+  +L SE
Sbjct: 299 IIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAASISLAQYLINVRLSSE 355

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>NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Onconeural ventral antigen 1)
           (Paraneoplastic Ri antigen) (Ventral neuron-specific
           protein 1)
          Length = 510

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 38/60 (63%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           ++GKGG T+ ++Q  +GARIQ+S+  EF PGT +R + ++G       A  L+ +++  E
Sbjct: 439 ILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYE 498



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSR---SHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL 171
           +IGKGG TI   Q ++GA I+LS+   S +F+PGT +R+ ++ G  + +      + EK+
Sbjct: 64  IIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKI 123



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/65 (33%), Positives = 41/65 (63%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IGKGG+T+     QSGA +QLS+  +      +R++ VSG  ++  KA+EL+++K+  +
Sbjct: 189 IIGKGGATVKAVMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNRKAVELIIQKIQED 247

Query: 181 GEESN 195
            +  +
Sbjct: 248 PQSGS 252

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>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)|
          Length = 365

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL--- 171
           +IGK G ++   + +SGARI +S  +       +RII ++G  + + KA  ++++KL   
Sbjct: 28  IIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFKAFAMIIDKLEED 82

Query: 172 LSEGEESNEAEARP--KFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGIK 315
           +S    ++ A +RP    RLVVP S C          IK   E + A ++
Sbjct: 83  ISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQ 132



 Score = 35.0 bits (79), Expect = 0.047
 Identities = 19/60 (31%), Positives = 35/60 (58%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG+ G+ IN+ +  SGA+I+++   E   G+ DR + ++G    +  A  L+  +L SE
Sbjct: 302 IIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAASISLAQYLINVRLSSE 358

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>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL--- 171
           +IGK G ++   + +SGARI +S  +       +RII ++G  + + KA  ++++KL   
Sbjct: 28  IIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFKAFAMIIDKLEED 82

Query: 172 LSEGEESNEAEARP--KFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGIK 315
           ++    ++ A +RP    RLVVP + C          IK   E + A ++
Sbjct: 83  INSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQ 132



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 18/60 (30%), Positives = 35/60 (58%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG+ G+ IN+ +  SGA+I+++   E   G++ R + ++G    +  A  L+  +L SE
Sbjct: 294 IIGRQGANINEIRQMSGAQIKIANPVE---GSSGRQVTITGSAASISLAQYLINARLSSE 350

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>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL--- 171
           +IGK G ++   + +SGARI +S  +       +RII ++G  + + KA  ++++KL   
Sbjct: 28  IIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFKAFAMIIDKLEED 82

Query: 172 LSEGEESNEAEARP--KFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGIK 315
           ++    ++ A +RP    RLVVP + C          IK   E + A ++
Sbjct: 83  INSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQ 132



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 18/60 (30%), Positives = 35/60 (58%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG+ G+ IN+ +  SGA+I+++   E   G++ R + ++G    +  A  L+  +L SE
Sbjct: 294 IIGRQGANINEIRQMSGAQIKIANPVE---GSSGRQVTITGSAASISLAQYLINARLSSE 350

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>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic|
           acid-binding protein SUB2.3)
          Length = 356

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL--- 171
           +IGK G ++   + +SGARI +S  +       +RII ++G  + + KA  ++++KL   
Sbjct: 28  IIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFKAFAMIIDKLEED 82

Query: 172 LSEGEESNEAEARP--KFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGIK 315
           ++    ++ A +RP    RLVVP + C          IK   E + A ++
Sbjct: 83  INSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQ 132



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 18/60 (30%), Positives = 35/60 (58%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG+ G+ IN+ +  SGA+I+++   E   G++ R + ++G    +  A  L+  +L SE
Sbjct: 294 IIGRQGANINEIRQMSGAQIKIANPVE---GSSGRQVTITGSAASISLAQYLINARLSSE 350

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>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELV---LEKL 171
           +IGK G T+   + +SGARI +S  +       +RI+ ++G  D + KA  ++    E+ 
Sbjct: 28  IIGKKGETVKKMREESGARINISEGN-----CPERIVTITGPTDAIFKAFAMIAYKFEED 82

Query: 172 LSEGEESNEAEARP--KFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGIK 315
           +     ++ A ++P    RLVVP S C        + IK   E + A ++
Sbjct: 83  IINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 132



 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 19/72 (26%), Positives = 40/72 (55%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IGKGGS I + +  +GA++Q+  + +  P + +R + +SG  D +++ ++ +   +L  
Sbjct: 112 LIGKGGSKIKEIRESTGAQVQV--AGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLES 169

Query: 181 GEESNEAEARPK 216
             +      RPK
Sbjct: 170 PPKGATIPYRPK 181



 Score = 35.8 bits (81), Expect = 0.028
 Identities = 19/60 (31%), Positives = 37/60 (61%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG+ G+ IN+ +  SGA+I+++ + E   G+++R I ++G    +  A  L+  +L SE
Sbjct: 276 IIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPANISLAQYLINARLTSE 332

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>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELV---LEKL 171
           +IGK G T+   + +SGARI +S  +       +RI+ ++G  D + KA  ++    E+ 
Sbjct: 28  IIGKKGETVKKMREESGARINISEGN-----CPERIVTITGPTDAIFKAFAMIAYKFEED 82

Query: 172 LSEGEESNEAEARP--KFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGIK 315
           +     ++ A ++P    RLVVP S C        + IK   E + A ++
Sbjct: 83  IINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 132



 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 19/72 (26%), Positives = 40/72 (55%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IGKGGS I + +  +GA++Q+  + +  P + +R + +SG  D +++ ++ +   +L  
Sbjct: 112 LIGKGGSKIKEIRESTGAQVQV--AGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLES 169

Query: 181 GEESNEAEARPK 216
             +      RPK
Sbjct: 170 PPKGATIPYRPK 181



 Score = 35.8 bits (81), Expect = 0.028
 Identities = 19/60 (31%), Positives = 37/60 (61%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG+ G+ IN+ +  SGA+I+++ + E   G+++R I ++G    +  A  L+  +L SE
Sbjct: 276 IIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPANISLAQYLINARLTSE 332

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>PBP2_YEAST (P38151) PAB1-binding protein 2|
          Length = 413

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           ++G  G+TI+  +S++ ARI +S +     G  +RI+ V G  D+V KA  +++  LL E
Sbjct: 81  IVGHKGATISRIKSETSARINISNN---IRGVPERIVYVRGTCDDVAKAYGMIVRALLEE 137

Query: 181 -GEESNEAEARPKFRLVVPN 237
            G E N  +      L++P+
Sbjct: 138 HGNEDNGEDIEISINLLIPH 157

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>FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP)
          Length = 651

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 22/57 (38%), Positives = 32/57 (56%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL 171
           +IGKGG TI     QSGARI+L RS       N ++  + G   ++  A +L+ EK+
Sbjct: 387 IIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 443



 Score = 35.0 bits (79), Expect = 0.047
 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG+GG  I+  Q +SG +IQ++      P   +R  M++G   E V++ + +L++++ +
Sbjct: 111 IIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGT-PESVQSAKRLLDQIVEK 166

Query: 181 GEES-----NEAEARPKFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGIK 315
           G  +      +        +++P S           TIK   E   AG+K
Sbjct: 167 GRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVK 214



 Score = 34.7 bits (78), Expect = 0.062
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           VIGKGG TI   Q ++G ++ + +      G  D+ + ++G   +V +A E+VLE +  +
Sbjct: 196 VIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELIRDQ 254

Query: 181 G---EESNEAEAR 210
           G   E  NE  +R
Sbjct: 255 GGFREVRNEYGSR 267



 Score = 33.1 bits (74), Expect = 0.18
 Identities = 32/126 (25%), Positives = 45/126 (35%), Gaps = 21/126 (16%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           VIG+ G  I   Q+ +G RIQ        P   DRI  ++G  D    A E++ + LL  
Sbjct: 286 VIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---DRIAQITGPPDRCQHAAEIITD-LLRS 341

Query: 181 GEESNEAEARP---------------------KFRLVVPNSSCXXXXXXXXATIKSFIED 297
            +  N     P                     +F  +VP             TIKS  + 
Sbjct: 342 VQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQ 401

Query: 298 SHAGIK 315
           S A I+
Sbjct: 402 SGARIE 407

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>FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP) (DNA helicase V) (HDH V)
          Length = 643

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 21/57 (36%), Positives = 32/57 (56%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL 171
           +IGKGG TI     QSGARI+L R+       N ++  + G   ++  A +L+ EK+
Sbjct: 390 IIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 446



 Score = 35.0 bits (79), Expect = 0.047
 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG+GG  I+  Q +SG +IQ++      P   +R  M++G   E V++ + +L++++ +
Sbjct: 114 IIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGT-PESVQSAKRLLDQIVEK 169

Query: 181 GEES-----NEAEARPKFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGIK 315
           G  +      +        +++P S           TIK   E   AG+K
Sbjct: 170 GRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQE--RAGVK 217



 Score = 34.7 bits (78), Expect = 0.062
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           VIGKGG TI   Q ++G ++ + +      G  D+ + ++G   +V +A E+VLE +  +
Sbjct: 199 VIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELIRDQ 257

Query: 181 G---EESNEAEAR 210
           G   E  NE  +R
Sbjct: 258 GGFREVRNEYGSR 270



 Score = 31.6 bits (70), Expect = 0.52
 Identities = 31/126 (24%), Positives = 45/126 (35%), Gaps = 21/126 (16%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           VIG+ G  I   Q+ +G RIQ        P   +RI  ++G  D    A E++ + LL  
Sbjct: 289 VIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---ERIAQITGPPDRCQHAAEIITD-LLRS 344

Query: 181 GEESNEAEARP---------------------KFRLVVPNSSCXXXXXXXXATIKSFIED 297
            +  N     P                     +F  +VP             TIKS  + 
Sbjct: 345 VQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQ 404

Query: 298 SHAGIK 315
           S A I+
Sbjct: 405 SGARIE 410

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>TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein|
          Length = 560

 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGT--NDRIIMVSGLFDEVVKAMELVLEKLL 174
           +IG+GG TI      SGA+I   +  E   GT    R+I +SG   EV  A  L+LEK +
Sbjct: 139 IIGRGGETIRSICKASGAKITCDKESE---GTLLLSRLIKISGTQKEVAAAKHLILEK-V 194

Query: 175 SEGEE 189
           SE EE
Sbjct: 195 SEDEE 199



 Score = 33.9 bits (76), Expect = 0.11
 Identities = 28/104 (26%), Positives = 49/104 (47%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG+ G+ I   + Q+GARI +          ++R++++SG   +V KA +  + ++L+E
Sbjct: 67  IIGRQGANIKQLRKQTGARIDVDTEDV----GDERVLLISGFPVQVCKA-KAAIHQILTE 121

Query: 181 GEESNEAEARPKFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGI 312
                E       +L VP  S          TI+S  + S A I
Sbjct: 122 NTPVFE-------QLSVPQRSVGRIIGRGGETIRSICKASGAKI 158

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>TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein|
          Length = 606

 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGT--NDRIIMVSGLFDEVVKAMELVLEKLL 174
           +IG+GG TI      SGA+I   +  E   GT    R+I +SG   EV  A  L+LEK +
Sbjct: 139 IIGRGGETIRSICKASGAKITCDKESE---GTLLLSRLIKISGTQKEVAAAKHLILEK-V 194

Query: 175 SEGEE 189
           SE EE
Sbjct: 195 SEDEE 199



 Score = 35.4 bits (80), Expect = 0.036
 Identities = 28/104 (26%), Positives = 50/104 (48%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG+ G+ I   + Q+GARI +          ++R++++SG   +V KA +  + ++L+E
Sbjct: 67  IIGRQGANIKQLRKQTGARIDVDTEDV----GDERVLLISGFPVQVCKA-KAAIHQILTE 121

Query: 181 GEESNEAEARPKFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGI 312
               +E       +L VP  S          TI+S  + S A I
Sbjct: 122 NTPVSE-------QLSVPQRSVGRIIGRGGETIRSICKASGAKI 158

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>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL--- 171
           +IGK G T+   + QS ARI +S          +RI  ++G    V  A+ ++  KL   
Sbjct: 32  IIGKKGETVKRIREQSSARITISEG-----SCPERITTITGSTAAVFHAVSMIAFKLDED 86

Query: 172 LSEGEESNEAEARP--KFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGIK 315
           L     +  + +RP    RLV+P S C          IK   E + A ++
Sbjct: 87  LCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQ 136



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELV 159
           VIG+ GS I++ +  SGA I++    E   G  +R + ++G    +  A  L+
Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTITGSPVSIALAQYLI 305

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>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC|
           stretch-binding protein) (CSBP)
          Length = 463

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/53 (37%), Positives = 31/53 (58%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELV 159
           +IGKGG  I   + +SGA I++    E   G+ DRII ++G  D++  A  L+
Sbjct: 402 IIGKGGQRIKQIRHESGASIKIDEPLE---GSEDRIITITGTQDQIQNAQYLL 451



 Score = 34.3 bits (77), Expect = 0.081
 Identities = 19/68 (27%), Positives = 39/68 (57%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG  G+ I + +  +   I+L +  E  P + DR++++ G  D VV+ ++++L+ L+SE
Sbjct: 159 IIGVKGAKIKELRENTQTTIKLFQ--ECCPHSTDRVVLIGGKPDRVVECIKIILD-LISE 215

Query: 181 GEESNEAE 204
                 A+
Sbjct: 216 SPIKGRAQ 223

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>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)|
          Length = 463

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/53 (37%), Positives = 31/53 (58%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELV 159
           +IGKGG  I   + +SGA I++    E   G+ DRII ++G  D++  A  L+
Sbjct: 402 IIGKGGQRIKQIRHESGASIKIDEPLE---GSEDRIITITGTQDQIQNAQYLL 451



 Score = 34.3 bits (77), Expect = 0.081
 Identities = 19/68 (27%), Positives = 39/68 (57%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG  G+ I + +  +   I+L +  E  P + DR++++ G  D VV+ ++++L+ L+SE
Sbjct: 159 IIGVKGAKIKELRENTQTTIKLFQ--ECCPHSTDRVVLIGGKPDRVVECIKIILD-LISE 215

Query: 181 GEESNEAE 204
                 A+
Sbjct: 216 SPIKGRAQ 223

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>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K|
          Length = 463

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/53 (37%), Positives = 31/53 (58%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELV 159
           +IGKGG  I   + +SGA I++    E   G+ DRII ++G  D++  A  L+
Sbjct: 402 IIGKGGQRIKQIRHESGASIKIDEPLE---GSEDRIITITGTQDQIQNAQYLL 451



 Score = 34.3 bits (77), Expect = 0.081
 Identities = 19/68 (27%), Positives = 39/68 (57%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG  G+ I + +  +   I+L +  E  P + DR++++ G  D VV+ ++++L+ L+SE
Sbjct: 159 IIGVKGAKIKELRENTQTTIKLFQ--ECCPHSTDRVVLIGGKPDRVVECIKIILD-LISE 215

Query: 181 GEESNEAE 204
                 A+
Sbjct: 216 SPIKGRAQ 223

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>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)|
           (Transformation up-regulated nuclear protein) (TUNP)
          Length = 463

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/53 (37%), Positives = 31/53 (58%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELV 159
           +IGKGG  I   + +SGA I++    E   G+ DRII ++G  D++  A  L+
Sbjct: 402 IIGKGGQRIKQIRHESGASIKIDEPLE---GSEDRIITITGTQDQIQNAQYLL 451



 Score = 34.3 bits (77), Expect = 0.081
 Identities = 19/68 (27%), Positives = 39/68 (57%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG  G+ I + +  +   I+L +  E  P + DR++++ G  D VV+ ++++L+ L+SE
Sbjct: 159 IIGVKGAKIKELRENTQTTIKLFQ--ECCPHSTDRVVLIGGKPDRVVECIKIILD-LISE 215

Query: 181 GEESNEAE 204
                 A+
Sbjct: 216 SPIKGRAQ 223

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>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL--- 171
           +IGK G T+   + QS ARI +S          +RI  ++G    V  A+ ++  KL   
Sbjct: 32  IIGKKGETVKRIREQSSARITISEG-----SCPERITTITGSTAAVFHAVSMIAFKLDED 86

Query: 172 --LSEGEESNEAEARPKFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGIK 315
              +     N +      RLV+P S C          IK   E + A ++
Sbjct: 87  LCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQ 136



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELV 159
           VIG+ GS I++ +  SGA I++    E   G  +R + ++G    +  A  L+
Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTITGSPVSIALAQYLI 305

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>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (MAP2 RNA trans-acting protein 1) (MARTA1)
          Length = 721

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG+GG  IN  Q  SG ++Q+S      P   +R + ++G  + V KA +++L+ ++S 
Sbjct: 160 IIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA-KMMLDDIVSR 215

Query: 181 G---------EESNEAEARPKFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGIK 315
           G         + +N  +      +++P             TIK   E   AG+K
Sbjct: 216 GRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVK 267



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL 171
           VIG+GG  +     Q+GA +++SR        N ++ ++ G   ++  A +L+ EK+
Sbjct: 440 VIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKI 496



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTN-DRIIMVSGLFDEVVKAMELVLEKL 171
           VIGKGG TI   Q ++G ++ L +       TN D+ + + G   +V +A E+V++ L
Sbjct: 249 VIGKGGETIKQLQERAGVKMILIQDGS--QNTNVDKPLRIIGDPYKVQQACEMVMDIL 304

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>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (p75)
          Length = 707

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG+GG  IN  Q  SG ++Q+S      P   +R + ++G  + V KA +++L+ ++S 
Sbjct: 159 IIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA-KMMLDDIVSR 214

Query: 181 G---------EESNEAEARPKFRLVVPNSSCXXXXXXXXATIKSFIEDSHAGIK 315
           G         + +N  +      +++P             TIK   E   AG+K
Sbjct: 215 GRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVK 266



 Score = 30.8 bits (68), Expect = 0.89
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL 171
           VIG+GG  +     Q+GA +++SR          ++ ++ G   ++    +L+ EK+
Sbjct: 437 VIGRGGENVKAINQQTGAFVEISRQLPPTGTPTSKLFIIRGSPQQIDHCRQLIEEKI 493



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTN-DRIIMVSGLFDEVVKAMELVLEKL 171
           VIGKGG TI   Q ++G ++ L +       TN D+ + + G   +V +A E+V++ L
Sbjct: 248 VIGKGGETIKQLQERAGVKMILIQDGS--QNTNVDKPLRIIGDPYKVQQACEMVMDIL 303

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>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2|
          Length = 769

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 21/61 (34%), Positives = 36/61 (59%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG+GG  IN  Q  SG ++Q+S      P   +R + ++G  + V KA +L+L+ ++S 
Sbjct: 223 IIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGSPEAVQKA-KLMLDDIVSR 278

Query: 181 G 183
           G
Sbjct: 279 G 279



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL 171
           VIG+GG  +     Q GA +++SR        N ++ ++ G   ++  A + + EK+
Sbjct: 501 VIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIEHAKQPIEEKI 557



 Score = 27.7 bits (60), Expect = 7.6
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTN-DRIIMVSGLFDEVVKAMELVLEKL 171
           VIGKGG TI   Q ++G ++   +       TN D+ + + G   +V +A E+V++ L
Sbjct: 311 VIGKGGETIKQLQERAGVKMIFIQDGS--QNTNVDKPLRIIGDPYKVQQACEMVMDIL 366

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>FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUSE-binding|
           protein 3)
          Length = 572

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKL 171
           VIGKGG  I     QSGA ++L R+       N R   + G+  ++  A +L+ EK+
Sbjct: 369 VIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKV 425



 Score = 33.1 bits (74), Expect = 0.18
 Identities = 21/73 (28%), Positives = 41/73 (56%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           VIG+GG TI   Q ++G ++ + +     P   D+ + ++G   +V +A E+VLE ++ E
Sbjct: 177 VIGRGGETIKQLQERTGVKMVMIQDGP-LPTGADKPLRITGDAFKVQQAREMVLE-IIRE 234

Query: 181 GEESNEAEARPKF 219
            ++++    R  F
Sbjct: 235 KDQADFRGVRGDF 247



 Score = 30.8 bits (68), Expect = 0.89
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELV 159
           +IG+GG  I+  Q++SG +IQ++      P   +R  +++G  + + +A  L+
Sbjct: 92  IIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQAKRLL 141



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           VIG+ G  I   Q+ +G RIQ        P   +R   V G  D    A  ++ E +L+ 
Sbjct: 268 VIGRNGEMIKKIQNDAGVRIQFKPDDGISP---ERAAQVMGPPDRCQHAAHIISELILTA 324

Query: 181 GE 186
            E
Sbjct: 325 QE 326

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>YBD2_YEAST (P38199) Hypothetical 41.7 kDa protein in RIB1-AAC2 intergenic|
           region
          Length = 381

 Score = 36.2 bits (82), Expect = 0.021
 Identities = 18/60 (30%), Positives = 34/60 (56%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IGK G+TI    ++ G +I  S+  +F P +++RII + G    +   +  + E +LS+
Sbjct: 171 IIGKAGATIKSLINKHGVKIVASK--DFLPASDERIIEIQGFPGSITNVLIEISEIILSD 228



 Score = 35.8 bits (81), Expect = 0.028
 Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 32/129 (24%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKA---MELVLEKL 171
           +IG  GSTI+  ++ +  +I +S   E  PG +DRI+  +G    V  A   +  VL K 
Sbjct: 58  IIGTKGSTISRIRAANAVKIGIS---EKVPGCSDRILSCAGNVINVANAIGDIVDVLNKR 114

Query: 172 LSEGEESNEAEARPKF-----------------------------RLVVPNSSCXXXXXX 264
             E E++ E EA   +                             RL+V NS        
Sbjct: 115 NPENEDAAEGEAEEHYYFHFLNHILPAPSKDEIRDLQQLEDIGYVRLIVANSHISSIIGK 174

Query: 265 XXATIKSFI 291
             ATIKS I
Sbjct: 175 AGATIKSLI 183

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>Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g18375|
          Length = 606

 Score = 36.2 bits (82), Expect = 0.021
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           VIGK GS IN+ + ++ A I +S+      G  D ++ VSG    V  A+  ++ +L  +
Sbjct: 409 VIGKSGSVINEIRKRTNANICISK------GKKDDLVEVSGEVSSVRDALIQIVLRLRED 462

Query: 181 --GEESNEAEARPKFRLVVPNSSCXXXXXXXXATIKSFI 291
             G++ + A  +P  R    N S          T+ SF+
Sbjct: 463 VLGDKDSVATRKPPAR--TDNCSFLSGSSNAGYTLPSFM 499



 Score = 31.2 bits (69), Expect = 0.69
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLS 177
           V+GKGG  + + +  SGA I++S S        D I ++SG  +++  A  LV   ++S
Sbjct: 550 VMGKGGGNLENIRRISGAMIEISASK---TSHGDHIALLSGTLEQMRCAENLVQAFVMS 605



 Score = 31.2 bits (69), Expect = 0.69
 Identities = 25/77 (32%), Positives = 39/77 (50%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           VIGKGGSTI   +  SG+ I+++ S          II+ +    + +K+M +    LL E
Sbjct: 326 VIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQE 385

Query: 181 GEESNEAEARPKFRLVV 231
                +AE   K +L+V
Sbjct: 386 YINDEDAE-NVKMQLLV 401

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>DDX23_HUMAN (Q9BUQ8) Probable ATP-dependent RNA helicase DDX23 (EC 3.6.1.-)|
           (DEAD box protein 23) (100 kDa U5 snRNP-specific
           protein) (U5-100kD) (PRP28 homolog)
          Length = 820

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +1

Query: 130 DEVVKAMELVLEKLLSEGEESNEAEARPKF 219
           D+ +KA  L LE+LL++ +   EAEA+PKF
Sbjct: 134 DKKLKAQPLSLEELLAKKKAEEEAEAKPKF 163

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>DDX23_PONPY (Q5RC67) Probable ATP-dependent RNA helicase DDX23 (EC 3.6.1.-)|
           (DEAD box protein 23)
          Length = 820

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +1

Query: 130 DEVVKAMELVLEKLLSEGEESNEAEARPKF 219
           D+  KA  L LE+LL++ +   EAEA+PKF
Sbjct: 134 DKKPKAQPLSLEELLAKKKAEEEAEAKPKF 163

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>VIGLN_CHICK (P81021) Vigilin|
          Length = 1270

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDR---IIMVSGLFDEVVKAMELVLEKL 171
           +IGKGG  I   +  +GARI        FP + D+   +I + G  +E VK  +  LE L
Sbjct: 742 LIGKGGGNIRKVRDNTGARI-------IFPTSEDKDQELITIMGT-EEAVKEAQKELEAL 793

Query: 172 L 174
           +
Sbjct: 794 I 794

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>FMT_RICTY (O33582) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 303

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/50 (22%), Positives = 27/50 (54%)
 Frame = +2

Query: 2   SLARVVQLLMTSNLSLGLVFNYRAAMSFSLVQMTESSWSLDCLMK*LRPW 151
           +LA +  ++     S G+ + ++   +   +   ES++S+DC ++ + PW
Sbjct: 178 TLANIDNIVPVKQSSNGVTYAHKLTKAEGKINWYESAYSIDCKIRGMNPW 227

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>FMT_RICPR (P50932) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 303

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/50 (22%), Positives = 27/50 (54%)
 Frame = +2

Query: 2   SLARVVQLLMTSNLSLGLVFNYRAAMSFSLVQMTESSWSLDCLMK*LRPW 151
           +LA +  ++     S G+ + ++   +   +   ES++S+DC ++ + PW
Sbjct: 178 TLANIDNIVPIKQSSNGITYAHKLTKAEGKINWYESAYSIDCKIRGMNPW 227

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>YQK1_CAEEL (Q09285) Hypothetical protein C56G2.1 in chromosome III|
          Length = 867

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IG  G TI +   ++  R+ + + HE       +I  V G  DE+   ++++  +    
Sbjct: 543 IIGVKGKTIKELSVRTNVRMLIRQHHETDKVKTHQICQVRGKRDEINHCLQMLRRRF--P 600

Query: 181 GEESNEAEARPKFRLVVPNSS 243
                E   +P    V+PNS+
Sbjct: 601 PARFPELNLQPVVPPVLPNSN 621

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>VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding protein)|
           (HDL-binding protein)
          Length = 1268

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDR---IIMVSGLFD---EVVKAMELVL 162
           +IGKGG  I   +  +GAR+        FP   D+   +I + G  D   E  K +E ++
Sbjct: 742 LIGKGGGKIRKVRDSTGARV-------IFPAAEDKDQDLITIIGKEDAVREAQKELEALI 794

Query: 163 EKLLSEGEES 192
           + L +  E+S
Sbjct: 795 QNLDNVVEDS 804

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>ECR1_PYRKO (Q5JIR5) Probable exosome complex RNA-binding protein 1|
          Length = 257

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           +IGKGGS IN  ++ +G RI + +         +  + VSG  DE+ +   L +E +L  
Sbjct: 162 LIGKGGSMINMIKTLTGTRIIVGQ---------NGWVWVSGKNDELER---LAIEAILKV 209

Query: 181 GEESN 195
             ES+
Sbjct: 210 DRESH 214

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>PRD16_HUMAN (Q9HAZ2) PR domain zinc finger protein 16 (PR domain-containing|
           protein 16) (Transcription factor MEL1)
          Length = 1276

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 76  HEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSEG 183
           H FFP  +++++  +G   + +KA+  + EK    G
Sbjct: 672 HSFFPPPDEQLLTATGAAGDSIKAIASIAEKYFGPG 707

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>AP3B_YEAST (P46682) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related|
           protein complex 3 beta subunit) (Clathrin assembly
           protein large beta chain) (Clathrin assembly protein
           complex 3 beta large chain)
          Length = 809

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDEVVKAMELVLEKLLSE 180
           + GKG   +N F SQ+G + +L    EFF    +R         +++K +E   ++   E
Sbjct: 727 ISGKGN--VNTFTSQNGKKYRLQSLDEFFSDIPER----KSKPRKIIKVVEESSDEDEDE 780

Query: 181 GEESNE 198
            EES++
Sbjct: 781 SEESSD 786

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>VIGLN_RAT (Q9Z1A6) Vigilin (High density lipoprotein-binding protein)|
           (HDL-binding protein)
          Length = 1268

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDR---IIMVSGLFD---EVVKAMELVL 162
           +IGKGG  I   +  +GARI        FP   D+   +I + G  D   E  K +E ++
Sbjct: 742 LIGKGGGKIRKVRDSTGARI-------IFPAAEDKDQDLITIIGKEDAVREAQKELEALI 794

Query: 163 EKL 171
           + L
Sbjct: 795 QNL 797

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>VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding protein)|
           (HDL-binding protein)
          Length = 1268

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +1

Query: 1   VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDR---IIMVSGLFD---EVVKAMELVL 162
           +IGKGG  I   +  +GARI        FP   D+   +I + G  D   E  K +E ++
Sbjct: 742 LIGKGGGKIRKVRDSTGARI-------IFPAAEDKDQDLITIIGKEDAVREAQKELEALI 794

Query: 163 EKL 171
           + L
Sbjct: 795 QNL 797

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>HTXA_PSEST (O69060) Probable alpha-ketoglutarate-dependent hypophosphite|
           dioxygenase (EC 1.-.-.-)
          Length = 286

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 31  DFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLFDE 135
           +F+  SGA +Q  +   F+P TND  + +    DE
Sbjct: 105 NFKPPSGAPVQWHQDWAFYPHTNDDFLTLGIFLDE 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.133    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,609,887
Number of Sequences: 219361
Number of extensions: 542506
Number of successful extensions: 1074
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result