ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31d13 |
|---|---|
| Clone Library Name | barley_pub |
>DGC14_HUMAN (Q96DF8) DGCR14 protein (DiGeorge syndrome critical region 14) (ES2| protein) Length = 476 Score = 46.6 bits (109), Expect = 3e-05 Identities = 17/26 (65%), Positives = 22/26 (84%) Frame = +3 Query: 381 GYSFVKTPSPAPGADESPFMTWGDID 458 G+ FV TPSPAPG +ESP MTWG+++ Sbjct: 297 GFGFVATPSPAPGVNESPMMTWGEVE 322
>DGC14_MOUSE (O70279) DGCR14 protein (DiGeorge syndrome critical region 14| homolog) (ES2 protein) (Expressed sequence 2 embryonic lethal) Length = 479 Score = 46.6 bits (109), Expect = 3e-05 Identities = 17/26 (65%), Positives = 22/26 (84%) Frame = +3 Query: 381 GYSFVKTPSPAPGADESPFMTWGDID 458 G+ FV TPSPAPG +ESP MTWG+++ Sbjct: 300 GFGFVATPSPAPGVNESPLMTWGEVE 325
>DGC14_DROME (O44424) DGCR14 protein homolog (ES2 protein) (dES2)| Length = 501 Score = 40.4 bits (93), Expect = 0.002 Identities = 15/27 (55%), Positives = 20/27 (74%) Frame = +3 Query: 381 GYSFVKTPSPAPGADESPFMTWGDIDG 461 G+ +++PSP PG SP MTWG+IDG Sbjct: 311 GFDLLRSPSPRPGEAFSPIMTWGEIDG 337
>DGC14_CAEEL (P34420) DGCR14 protein homolog (DiGeorge syndrome critical region| 14 homolog) Length = 531 Score = 38.5 bits (88), Expect = 0.008 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +3 Query: 378 NGYSFVKTPSPAPGADESPFMTWGDIDG 461 N + ++TP+P P +SP MTWG+IDG Sbjct: 324 NSFKLLETPNPNPDDMDSPLMTWGEIDG 351
>DDX31_HUMAN (Q9H8H2) Probable ATP-dependent RNA helicase DDX31 (EC 3.6.1.-)| (DEAD box protein 31) (Helicain) Length = 851 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +3 Query: 18 VHLGSHRVRWRVPSLRPRTCSCTTLPTEVKHLSLMRSLRCG 140 VH RV W +L+ + T P E+KH+ +RSL G Sbjct: 701 VHSSERRVSWAKKALQSFIQAYATYPRELKHIFHVRSLHLG 741
>SY61_DISOM (P24505) Synaptotagmin A (Synaptic vesicle protein O-p65-A)| Length = 427 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = +3 Query: 234 AAILYALVAGST--PGGMAYNDPDKGKKYDLEDLRKTPNPFYIES 362 AA L AL G T P + PDK KKY+ + RKT NP + ES Sbjct: 171 AAELPALDVGGTSDPYVKVFVLPDKKKKYETKVHRKTLNPVFNES 215
>SY65_APLCA (P41823) Synaptotagmin-1 (Synaptotagmin I) (p65)| Length = 428 Score = 29.6 bits (65), Expect = 3.9 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = +3 Query: 264 STPGGMAYNDPDKGKKYDLEDLRKTPNPFYIES 362 S P Y PDK KKY+ + RKT NP + ES Sbjct: 189 SDPYVKVYLLPDKKKKYETKVHRKTLNPVFNES 221
>RBL_PROMP (Q7V2D0) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 471 Score = 29.3 bits (64), Expect = 5.1 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Frame = +3 Query: 192 KALAEDGRPKEEEAAAILYALVAG--STPGGMAYNDPD--KGKKYDLEDLRKTPNPFY 353 K ++G P+EE AAA+ G ST D + KG+ Y +ED+ P FY Sbjct: 33 KCTGQEGVPREEVAAAVAAESSTGTWSTVWSELLTDLEFYKGRCYRIEDVPGDPEAFY 90
>VPS18_BRARE (P59015) Vacuolar protein sorting 18| Length = 974 Score = 29.3 bits (64), Expect = 5.1 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = -2 Query: 184 NLVFDLSIXLGEPLQPHRKLLISERC---FTSVGRVVHEQVLGRKLGTLQR 41 N V +SI L Q H LL+ +R T G+VVHE V K GTLQ+ Sbjct: 321 NFVKPISIVL---TQFHFLLLLPDRVRGICTLNGQVVHEDVFPEKFGTLQK 368
>SY62_DISOM (P24506) Synaptotagmin B (Synaptic vesicle protein O-p65-B)| Length = 439 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = +3 Query: 234 AAILYALVAGST--PGGMAYNDPDKGKKYDLEDLRKTPNPFYIES 362 AA L AL G T P + PDK KKY+ + +KT NP + ES Sbjct: 183 AAELPALDMGGTSDPYVKVFLLPDKKKKYETKVQKKTLNPTFNES 227
>RBL_SYNPX (Q7U5I8) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 471 Score = 28.9 bits (63), Expect = 6.7 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Frame = +3 Query: 192 KALAEDGRPKEEEAAAILYALVAG--STPGGMAYNDPD--KGKKYDLEDLRKTPNPFY 353 K ++G PKEE AAA+ G ST D D KG+ Y +ED+ FY Sbjct: 33 KCTGQEGVPKEEVAAAVAAESSTGTWSTVWSELLTDLDFYKGRCYRIEDVPGDKESFY 90
>RBL_SYNPW (P96486) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 471 Score = 28.9 bits (63), Expect = 6.7 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Frame = +3 Query: 192 KALAEDGRPKEEEAAAILYALVAG--STPGGMAYNDPD--KGKKYDLEDLRKTPNPFY 353 K ++G PKEE AAA+ G ST D D KG+ Y +ED+ FY Sbjct: 33 KCTGQEGVPKEEVAAAVAAESSTGTWSTVWSELLTDLDFYKGRCYRIEDVPGDKESFY 90
>TY3H_RAT (P04177) Tyrosine 3-monooxygenase (EC 1.14.16.2) (Tyrosine| 3-hydroxylase) (TH) Length = 498 Score = 28.5 bits (62), Expect = 8.7 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = +3 Query: 150 SPRXIDKSNTRLHGKALAEDGRPKEEEAAAILYALVAGSTPG 275 SPR I + ++L ED R + E AAA A VA S PG Sbjct: 31 SPRFIGRR------QSLIEDARKEREAAAAAAAAAVASSEPG 66
>SYT2_RAT (P29101) Synaptotagmin-2 (Synaptotagmin II) (SytII)| Length = 422 Score = 28.5 bits (62), Expect = 8.7 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = +3 Query: 234 AAILYALVAGST--PGGMAYNDPDKGKKYDLEDLRKTPNPFYIES 362 AA L AL G T P + PDK KKY+ + RKT NP + E+ Sbjct: 166 AAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNET 210
>SYT2_MOUSE (P46097) Synaptotagmin-2 (Synaptotagmin II) (SytII)| Length = 422 Score = 28.5 bits (62), Expect = 8.7 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = +3 Query: 234 AAILYALVAGST--PGGMAYNDPDKGKKYDLEDLRKTPNPFYIES 362 AA L AL G T P + PDK KKY+ + RKT NP + E+ Sbjct: 166 AAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNET 210
>SYT2_HUMAN (Q8N9I0) Synaptotagmin-2 (Synaptotagmin II) (SytII)| Length = 419 Score = 28.5 bits (62), Expect = 8.7 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = +3 Query: 234 AAILYALVAGST--PGGMAYNDPDKGKKYDLEDLRKTPNPFYIES 362 AA L AL G T P + PDK KKY+ + RKT NP + E+ Sbjct: 163 AAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNET 207
>SPT51_ARATH (Q9STN3) Putative transcription elongation factor SPT5 homolog 1| Length = 1054 Score = 28.5 bits (62), Expect = 8.7 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Frame = +3 Query: 267 TPGGMAYNDPDKGKKYDLEDLRKTPNPFYIESGKKADNGYSFVKTPSP----APGADESP 434 +P AY P G + TP Y ++G D+G ++ PSP PG +P Sbjct: 859 SPPSRAYEAPTPGSGW-----ASTPGGSYSDAGTPRDHGSAYANAPSPYLPSTPGQPMTP 913
>MA2A1_MOUSE (P27046) Alpha-mannosidase 2 (EC 3.2.1.114) (Alpha-mannosidase II)| (Mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase) (MAN II) (Golgi alpha-mannosidase II) (Mannosidase alpha class 2A member 1) (AMAN II) Length = 1150 Score = 28.5 bits (62), Expect = 8.7 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 16/108 (14%) Frame = +3 Query: 111 LSLMRSLRCG*RGSPRXIDKSNTRLHGKALAEDGRPKEEEAAAILYALVAGSTPGG---- 278 ++L S+ G RGSP + + LH LA P++ L+A +GS P Sbjct: 77 INLSESVEDGPRGSPGNASQGSIHLHSPQLALQADPRD-----CLFASQSGSQPRDVQML 131 Query: 279 -----MAYNDPDKGK-------KYDLEDLRKTPNPFYIESGKKADNGY 386 + +++PD G KY+ ++ P ++ D G+ Sbjct: 132 DVYDLIPFDNPDGGVWKQGFDIKYEADEWDHEPLQVFVVPHSHNDPGW 179
>SYT1_CHICK (P47191) Synaptotagmin-1 (Synaptotagmin I) (SytI) (p65)| Length = 424 Score = 28.5 bits (62), Expect = 8.7 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = +3 Query: 234 AAILYALVAGST--PGGMAYNDPDKGKKYDLEDLRKTPNPFYIE 359 AA L AL G T P + PDK KKY+ + RKT NP + E Sbjct: 168 AAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPVFNE 211
>EF1A_MAIZE (Q41803) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 28.5 bits (62), Expect = 8.7 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%) Frame = +2 Query: 11 GYGTSGQSPSTL-EGAKFTAKNLLMYHPAD--RGEAPLTD---EELAVRLKGL-TKXDRQ 169 GY SG E A FT++ ++M HP G AP+ D +AV+ L TK DR+ Sbjct: 311 GYVASGSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRR 370 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,509,101 Number of Sequences: 219361 Number of extensions: 1663780 Number of successful extensions: 4790 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4639 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4786 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
