Clone Information

BLAST Search Result

Clone Name	bags31d13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	236	5e-59
2	dbj\|AP003527.3\| Oryza sativa (japonica cultivar-group) genomic D...	236	5e-59
3	dbj\|AK120599.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	236	5e-59
4	dbj\|AK103578.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	236	5e-59
5	gb\|AY107878.1\| Zea mays PCO076796 mRNA sequence	147	4e-32
6	emb\|CR955006.2\| Medicago truncatula chromosome 5 clone mth2-5i4,...	62	2e-06
7	gb\|AC083982.13\| Homo sapiens chromosome 8, clone RP11-520P18, co...	44	0.40
8	gb\|AC116136.9\| Mus musculus chromosome 5, clone RP23-116G17, com...	42	1.6
9	ref\|NM_111658.3\| Arabidopsis thaliana unknown protein AT3G07790 ...	42	1.6
10	ref\|XM_632537.1\| Dictyostelium discoideum hypothetical protein (...	42	1.6
11	gb\|AC009176.5\|ATAC009176 Arabidopsis thaliana chromosome III P1 ...	42	1.6
12	gb\|AC013483.7\|ATAC013483 Arabidopsis thaliana chromosome III BAC...	42	1.6
13	emb\|AL121893.21\|HSA189K21 Human DNA sequence from clone RP11-189...	42	1.6
14	gb\|AC100848.2\| Homo sapiens chromosome 18, clone RP11-909B2, com...	42	1.6
15	gb\|AC159132.2\| Pan troglodytes BAC clone CH251-542P7 from chromo...	42	1.6
16	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	42	1.6
17	gb\|AC120353.9\| Mus musculus chromosome 5, clone RP24-239E2, comp...	42	1.6
18	gb\|AC005606.3\| Homo sapiens chromosome 16, P1 clone 109-8C (LANL...	40	6.2
19	ref\|XM_414520.1\| PREDICTED: Gallus gallus similar to 2010005A06R...	40	6.2
20	gb\|AY676328.1\| Gallus gallus protocadherin mRNA, complete cds	40	6.2
21	gb\|AE016853.1\| Pseudomonas syringae pv. tomato str. DC3000 compl...	40	6.2
22	gb\|AC161216.4\| Mus musculus chromosome 7, clone RP23-8K23, compl...	40	6.2
23	ref\|NM_178167.2\| Homo sapiens zinc finger protein 598 (ZNF598), ...	40	6.2
24	gb\|BC010990.2\| Homo sapiens zinc finger protein 598, mRNA (cDNA ...	40	6.2
25	gb\|AC147052.2\| Pan troglodytes BAC clone RP43-143G1 from 7, comp...	40	6.2
26	ref\|XM_738817.1\| Plasmodium chabaudi chabaudi hypothetical prote...	40	6.2
27	ref\|XM_739041.1\| Plasmodium chabaudi chabaudi hypothetical prote...	40	6.2
28	gb\|AC102077.7\| Mus musculus chromosome 7, clone RP23-423B21, com...	40	6.2
29	gb\|AC146125.2\| Pan troglodytes BAC clone RP43-4K13 from 7, compl...	40	6.2
30	gb\|BC010243.1\| Homo sapiens cDNA clone IMAGE:3463566, **** WARNI...	40	6.2
31	emb\|AL158011.13\| Human DNA sequence from clone GS1-215N23 on chr...	40	6.2
32	gb\|BC050477.1\| Homo sapiens zinc finger protein 598, mRNA (cDNA ...	40	6.2
33	dbj\|AP008230.1\| Desulfitobacterium hafniense Y51 genomic DNA, co...	40	6.2
34	gb\|AC135611.25\| Pan troglodytes clone rp43-14h17, complete sequence	40	6.2
35	emb\|BX511303.8\| Zebrafish DNA sequence from clone DKEY-227L13 in...	40	6.2
36	gb\|AC016830.5\| Homo sapiens chromosome 22 clone b81b3 map 22q11,...	40	6.2
37	gb\|AC016027.15\| Homo sapiens chromosome 22 clone b476c20 map 22q...	40	6.2
38	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
39	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
40	gb\|DQ008178.1\| Panorpa multifasciaria isolate Pm12 18S ribosomal...	40	6.2
41	dbj\|AB085460.1\| Uncultured bacterium gene for putative formyltet...	40	6.2
42	dbj\|AB085310.1\| Uncultured bacterium gene for putative formyltet...	40	6.2
43	dbj\|AB085309.1\| Uncultured bacterium gene for putative formyltet...	40	6.2
44	gb\|AC009481.4\|AC009481 Homo sapiens BAC clone RP11-303D3 from 1,...	40	6.2
45	gb\|AY938254.1\| Uncultured eukaryote clone ENI47296.00075 18S rib...	40	6.2
46	gb\|AY956324.1\| Blastocystis hominis isolate 418 18S ribosomal RN...	40	6.2
47	dbj\|AK024487.1\| Homo sapiens mRNA for FLJ00086 protein, partial cds	40	6.2
48	gb\|AC131315.16\| Mus musculus chromosome 7, clone RP24-535I10, co...	40	6.2
49	dbj\|AK105293.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.2
50	dbj\|AK099132.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.2
51	dbj\|AK072914.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.2
52	gb\|AC115901.8\| Mus musculus chromosome 5, clone RP24-465E5, comp...	40	6.2
53	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2
54	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2
55	emb\|BX000501.4\|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa...	40	6.2
56	emb\|BX000494.2\|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa...	40	6.2
57	gb\|DQ133053.1\| Trichobius hirsutulus 18S ribosomal RNA gene, par...	40	6.2
58	gb\|AY446940.1\| Callipallene novaezelandiae 18S ribosomal RNA gen...	40	6.2
59	dbj\|AP000344.1\| Homo sapiens genomic DNA, chromosome 22q11.2, cl...	40	6.2

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  236 bits (119), Expect = 5e-59
 Identities = 212/243 (87%)
 Strand = Plus / Plus

                                                                            
Query: 219      aaggaggaggaggcagccgccatactgtatgctctagttgcaggctccactcctggagga 278
                ||||||||||||||||| || ||||| ||||| | ||||||||| |||||||| ||||| 
Sbjct: 17594932 aaggaggaggaggcagctgctatactttatgcgccagttgcaggttccactcccggaggt 17594991

                                                                            
Query: 279      atggcgtacaatgatcctgacaaaggaaagaagtatgatttggaggatctaaggaagaca 338
                ||||| ||| |||||||||| ||||  |||||||| ||||||||||||||||||||||| 
Sbjct: 17594992 atggcataccatgatcctgataaagcgaagaagtacgatttggaggatctaaggaagact 17595051

                                                                            
Query: 339      ccaaacccgttttacattgaatcagggaagaaggcagacaatgggtacagtttcgtgaaa 398
                |||||||| || ||| |||| ||||||||||| ||| |||||||||| ||||| |||| |
Sbjct: 17595052 ccaaacccattctacgttgagtcagggaagaatgcaaacaatgggtatagttttgtgaga 17595111

                                                                            
Query: 399      acaccatcgccagcacctggcgctgatgagtccccgttcatgacatggggcgatatcgat 458
                || |||||||||||||||||||  |||||||| ||||||||||||||||| || || |||
Sbjct: 17595112 acgccatcgccagcacctggcgtggatgagtcaccgttcatgacatggggtgagattgat 17595171

                   
Query: 459      gga 461
                |||
Sbjct: 17595172 gga 17595174



 Score =  117 bits (59), Expect = 3e-23
 Identities = 126/147 (85%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                            
Query: 44       ttggagggtgccaagtttacggccaagaacctgctcatgtaccaccctgccgaccgaggt 103
                ||||||||||||||||| |||||||||||||||||||||||| |||| || ||||| || 
Sbjct: 17594761 ttggagggtgccaagttcacggccaagaacctgctcatgtactacccggctgaccgtggg 17594820

                                                                            
Query: 104      gaagcacctctcactgatgaggagcttgcggtgcggctgaaggggctcaccaaggnagat 163
                || || || || |||||||||||||  || | |||||| |||||| | ||||||| ||||
Sbjct: 17594821 gaggccccgcttactgatgaggagcgcgccgagcggctcaaggggatgaccaagg-agat 17594879

                                           
Query: 164      cgacaagtcaaacaccaggttacatgg 190
                ||||| ||| ||||||||||| |||||
Sbjct: 17594880 cgacaggtcgaacaccaggttccatgg 17594906

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>dbj|AP003527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0564B04
          Length = 64684

 Score =  236 bits (119), Expect = 5e-59
 Identities = 212/243 (87%)
 Strand = Plus / Plus

                                                                         
Query: 219   aaggaggaggaggcagccgccatactgtatgctctagttgcaggctccactcctggagga 278
             ||||||||||||||||| || ||||| ||||| | ||||||||| |||||||| ||||| 
Sbjct: 21280 aaggaggaggaggcagctgctatactttatgcgccagttgcaggttccactcccggaggt 21339

                                                                         
Query: 279   atggcgtacaatgatcctgacaaaggaaagaagtatgatttggaggatctaaggaagaca 338
             ||||| ||| |||||||||| ||||  |||||||| ||||||||||||||||||||||| 
Sbjct: 21340 atggcataccatgatcctgataaagcgaagaagtacgatttggaggatctaaggaagact 21399

                                                                         
Query: 339   ccaaacccgttttacattgaatcagggaagaaggcagacaatgggtacagtttcgtgaaa 398
             |||||||| || ||| |||| ||||||||||| ||| |||||||||| ||||| |||| |
Sbjct: 21400 ccaaacccattctacgttgagtcagggaagaatgcaaacaatgggtatagttttgtgaga 21459

                                                                         
Query: 399   acaccatcgccagcacctggcgctgatgagtccccgttcatgacatggggcgatatcgat 458
             || |||||||||||||||||||  |||||||| ||||||||||||||||| || || |||
Sbjct: 21460 acgccatcgccagcacctggcgtggatgagtcaccgttcatgacatggggtgagattgat 21519

                
Query: 459   gga 461
             |||
Sbjct: 21520 gga 21522



 Score =  117 bits (59), Expect = 3e-23
 Identities = 126/147 (85%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                         
Query: 44    ttggagggtgccaagtttacggccaagaacctgctcatgtaccaccctgccgaccgaggt 103
             ||||||||||||||||| |||||||||||||||||||||||| |||| || ||||| || 
Sbjct: 21109 ttggagggtgccaagttcacggccaagaacctgctcatgtactacccggctgaccgtggg 21168

                                                                         
Query: 104   gaagcacctctcactgatgaggagcttgcggtgcggctgaaggggctcaccaaggnagat 163
             || || || || |||||||||||||  || | |||||| |||||| | ||||||| ||||
Sbjct: 21169 gaggccccgcttactgatgaggagcgcgccgagcggctcaaggggatgaccaagg-agat 21227

                                        
Query: 164   cgacaagtcaaacaccaggttacatgg 190
             ||||| ||| ||||||||||| |||||
Sbjct: 21228 cgacaggtcgaacaccaggttccatgg 21254

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>dbj|AK120599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149F09, full
            insert sequence
          Length = 1879

 Score =  236 bits (119), Expect = 5e-59
 Identities = 212/243 (87%)
 Strand = Plus / Plus

                                                                        
Query: 219  aaggaggaggaggcagccgccatactgtatgctctagttgcaggctccactcctggagga 278
            ||||||||||||||||| || ||||| ||||| | ||||||||| |||||||| ||||| 
Sbjct: 1021 aaggaggaggaggcagctgctatactttatgcgccagttgcaggttccactcccggaggt 1080

                                                                        
Query: 279  atggcgtacaatgatcctgacaaaggaaagaagtatgatttggaggatctaaggaagaca 338
            ||||| ||| |||||||||| ||||  |||||||| ||||||||||||||||||||||| 
Sbjct: 1081 atggcataccatgatcctgataaagcgaagaagtacgatttggaggatctaaggaagact 1140

                                                                        
Query: 339  ccaaacccgttttacattgaatcagggaagaaggcagacaatgggtacagtttcgtgaaa 398
            |||||||| || ||| |||| ||||||||||| ||| |||||||||| ||||| |||| |
Sbjct: 1141 ccaaacccattctacgttgagtcagggaagaatgcaaacaatgggtatagttttgtgaga 1200

                                                                        
Query: 399  acaccatcgccagcacctggcgctgatgagtccccgttcatgacatggggcgatatcgat 458
            || |||||||||||||||||||  |||||||| ||||||||||||||||| || || |||
Sbjct: 1201 acgccatcgccagcacctggcgtggatgagtcaccgttcatgacatggggtgagattgat 1260

               
Query: 459  gga 461
            |||
Sbjct: 1261 gga 1263



 Score =  117 bits (59), Expect = 3e-23
 Identities = 126/147 (85%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                       
Query: 44  ttggagggtgccaagtttacggccaagaacctgctcatgtaccaccctgccgaccgaggt 103
           ||||||||||||||||| |||||||||||||||||||||||| |||| || ||||| || 
Sbjct: 850 ttggagggtgccaagttcacggccaagaacctgctcatgtactacccggctgaccgtggg 909

                                                                       
Query: 104 gaagcacctctcactgatgaggagcttgcggtgcggctgaaggggctcaccaaggnagat 163
           || || || || |||||||||||||  || | |||||| |||||| | ||||||| ||||
Sbjct: 910 gaggccccgcttactgatgaggagcgcgccgagcggctcaaggggatgaccaagg-agat 968

                                      
Query: 164 cgacaagtcaaacaccaggttacatgg 190
           ||||| ||| ||||||||||| |||||
Sbjct: 969 cgacaggtcgaacaccaggttccatgg 995

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>dbj|AK103578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132P14, full
            insert sequence
          Length = 2166

 Score =  236 bits (119), Expect = 5e-59
 Identities = 212/243 (87%)
 Strand = Plus / Plus

                                                                        
Query: 219  aaggaggaggaggcagccgccatactgtatgctctagttgcaggctccactcctggagga 278
            ||||||||||||||||| || ||||| ||||| | ||||||||| |||||||| ||||| 
Sbjct: 993  aaggaggaggaggcagctgctatactttatgcgccagttgcaggttccactcccggaggt 1052

                                                                        
Query: 279  atggcgtacaatgatcctgacaaaggaaagaagtatgatttggaggatctaaggaagaca 338
            ||||| ||| |||||||||| ||||  |||||||| ||||||||||||||||||||||| 
Sbjct: 1053 atggcataccatgatcctgataaagcgaagaagtacgatttggaggatctaaggaagact 1112

                                                                        
Query: 339  ccaaacccgttttacattgaatcagggaagaaggcagacaatgggtacagtttcgtgaaa 398
            |||||||| || ||| |||| ||||||||||| ||| |||||||||| ||||| |||| |
Sbjct: 1113 ccaaacccattctacgttgagtcagggaagaatgcaaacaatgggtatagttttgtgaga 1172

                                                                        
Query: 399  acaccatcgccagcacctggcgctgatgagtccccgttcatgacatggggcgatatcgat 458
            || |||||||||||||||||||  |||||||| ||||||||||||||||| || || |||
Sbjct: 1173 acgccatcgccagcacctggcgtggatgagtcaccgttcatgacatggggtgagattgat 1232

               
Query: 459  gga 461
            |||
Sbjct: 1233 gga 1235



 Score =  117 bits (59), Expect = 3e-23
 Identities = 126/147 (85%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                       
Query: 44  ttggagggtgccaagtttacggccaagaacctgctcatgtaccaccctgccgaccgaggt 103
           ||||||||||||||||| |||||||||||||||||||||||| |||| || ||||| || 
Sbjct: 822 ttggagggtgccaagttcacggccaagaacctgctcatgtactacccggctgaccgtggg 881

                                                                       
Query: 104 gaagcacctctcactgatgaggagcttgcggtgcggctgaaggggctcaccaaggnagat 163
           || || || || |||||||||||||  || | |||||| |||||| | ||||||| ||||
Sbjct: 882 gaggccccgcttactgatgaggagcgcgccgagcggctcaaggggatgaccaagg-agat 940

                                      
Query: 164 cgacaagtcaaacaccaggttacatgg 190
           ||||| ||| ||||||||||| |||||
Sbjct: 941 cgacaggtcgaacaccaggttccatgg 967

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>gb|AY107878.1| Zea mays PCO076796 mRNA sequence
          Length = 928

 Score =  147 bits (74), Expect = 4e-32
 Identities = 306/382 (80%), Gaps = 1/382 (0%)
 Strand = Plus / Plus

                                                                       
Query: 76  gctcatgtaccaccctgccgaccgaggtgaagcacctctcactgatgaggagcttgcggt 135
           |||||||||| |||| || ||||  || ||||| || ||||| || |||||||  || | 
Sbjct: 4   gctcatgtactacccggctgaccagggggaagcgcccctcacggaggaggagcgcgcaga 63

                                                                       
Query: 136 gcggctgaaggggctcaccaaggnagatcgacaagtcaaacaccaggttacatggaaaag 195
           |||||| | |||| | ||||||| ||||  ||||| | ||||||||| ||||||| | ||
Sbjct: 64  gcggctcagggggatgaccaagg-agataaacaagccgaacaccaggctacatggcagag 122

                                                                       
Query: 196 ctctggctgaagacgggaggcccaaggaggaggaggcagccgccatactgtatgctctag 255
           |   |||||| |||| ||||||||||||||||||||  |||||||||||||| || ||||
Sbjct: 123 ccacggctgatgacgcgaggcccaaggaggaggagggggccgccatactgtacgcgctag 182

                                                                       
Query: 256 ttgcaggctccactcctggaggaatggcgtacaatgatcctgacaaaggaaagaagtatg 315
           |||||||||| ||||| ||||| ||||| ||| | || ||||||||    |||||||| |
Sbjct: 183 ttgcaggctctactccgggagggatggcctaccacgaccctgacaagttgaagaagtacg 242

                                                                       
Query: 316 atttggaggatctaaggaagacaccaaacccgttttacattgaatcagggaagaaggcag 375
           || ||||||| || |||||||| || ||||| || ||| | || || |  |||||||| |
Sbjct: 243 atctggaggacctgaggaagaccccgaaccctttctacctcgagtcggacaagaaggccg 302

                                                                       
Query: 376 acaatgggtacagtttcgtgaaaacaccatcgccagcacctggcgctgatgagtccccgt 435
            ||| ||||||||||| ||||  ||||| ||||| ||||| ||||  || ||||| ||||
Sbjct: 303 gcaacgggtacagttttgtgaggacaccgtcgccggcacccggcgtggacgagtcgccgt 362

                                 
Query: 436 tcatgacatggggcgatatcga 457
           ||||||| ||||| || |||||
Sbjct: 363 tcatgacgtggggtgagatcga 384

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>emb|CR955006.2| Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE
          Length = 108871

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 106/131 (80%)
 Strand = Plus / Minus

                                                                         
Query: 306   aagaagtatgatttggaggatctaaggaagacaccaaacccgttttacattgaatcaggg 365
             ||||||||||||||||||||| | |||||||| || || ||||||||  | ||||| |||
Sbjct: 56637 aagaagtatgatttggaggatttgaggaagactccgaatccgttttatttggaatctggg 56578

                                                                         
Query: 366   aagaaggcagacaatgggtacagtttcgtgaaaacaccatcgccagcacctggcgctgat 425
             ||||| || || ||||| || || |  || || || ||||| || ||||| || ||||||
Sbjct: 56577 aagaaagctgataatggttatagctatgttaagacgccatctcctgcaccgggagctgat 56518

                        
Query: 426   gagtccccgtt 436
             ||||| |||||
Sbjct: 56517 gagtctccgtt 56507

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>gb|AC083982.13| Homo sapiens chromosome 8, clone RP11-520P18, complete sequence
          Length = 173910

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 211    ggaggcccaaggaggaggaggcagcc 236
              ||||||||||||||||||| ||||||
Sbjct: 102519 ggaggcccaaggaggaggatgcagcc 102494

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>gb|AC116136.9| Mus musculus chromosome 5, clone RP23-116G17, complete sequence
          Length = 212184

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 220    aggaggaggaggcagccgcca 240
              |||||||||||||||||||||
Sbjct: 211550 aggaggaggaggcagccgcca 211570

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>ref|NM_111658.3| Arabidopsis thaliana unknown protein AT3G07790 mRNA, complete cds
          Length = 1852

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                        
Query: 311  gtatgatttggaggatctaaggaagacaccaaacccgttttacattgaatcagggaagaa 370
            ||||||| | || ||||||||||| ||||| || || || ||  | |||||||  |||| 
Sbjct: 1082 gtatgatcttgatgatctaaggaaaacaccgaatcctttctatgtggaatcagataagag 1141

                                 
Query: 371  ggcagacaatgggtacagttt 391
            ||||||||||||||| |||||
Sbjct: 1142 ggcagacaatgggtatagttt 1162

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>ref|XM_632537.1| Dictyostelium discoideum hypothetical protein (DDB0187102), partial
           mRNA
          Length = 747

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 167 caagtcaaacaccaggttaca 187
           |||||||||||||||||||||
Sbjct: 716 caagtcaaacaccaggttaca 736

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>gb|AC009176.5|ATAC009176 Arabidopsis thaliana chromosome III P1 MLP3 genomic sequence, complete
             sequence
          Length = 79296

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                         
Query: 311   gtatgatttggaggatctaaggaagacaccaaacccgttttacattgaatcagggaagaa 370
             ||||||| | || ||||||||||| ||||| || || || ||  | |||||||  |||| 
Sbjct: 74446 gtatgatcttgatgatctaaggaaaacaccgaatcctttctatgtggaatcagataagag 74505

                                  
Query: 371   ggcagacaatgggtacagttt 391
             ||||||||||||||| |||||
Sbjct: 74506 ggcagacaatgggtatagttt 74526

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>gb|AC013483.7|ATAC013483 Arabidopsis thaliana chromosome III BAC F17A17 genomic sequence,
             complete sequence
          Length = 121054

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                         
Query: 311   gtatgatttggaggatctaaggaagacaccaaacccgttttacattgaatcagggaagaa 370
             ||||||| | || ||||||||||| ||||| || || || ||  | |||||||  |||| 
Sbjct: 39480 gtatgatcttgatgatctaaggaaaacaccgaatcctttctatgtggaatcagataagag 39539

                                  
Query: 371   ggcagacaatgggtacagttt 391
             ||||||||||||||| |||||
Sbjct: 39540 ggcagacaatgggtatagttt 39560

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>emb|AL121893.21|HSA189K21 Human DNA sequence from clone RP11-189K21 on chromosome 20 Contains the
              5' end of the C20orf12 gene for chromosome 20 open reading
              frame 12, the GCNT1P gene for glucosaminyl (N-acetyl)
              transferase 1 core 2 (beta-1,6-N-acetylglucosaminyl
              transferase pseudogene, the POLR3F gene for RNA polymerase
              III (DNA directed) polypeptide F (39 kDa), the RPL21P3 gene
              for ribosomal protein L21 pseudogene 3, the RBBP9 gene for
              retinoblastoma binding protein 9, the 5' end of the SEC23B
              gene for Sec23 (S. cerevisae) homolog B, the RPS19P1 gene
              for ribosomal protein S19 pseudogene 1 and three CpG
              islands, complete sequence
          Length = 151136

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 210    gggaggcccaaggaggaggag 230
              |||||||||||||||||||||
Sbjct: 132113 gggaggcccaaggaggaggag 132133

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>gb|AC100848.2| Homo sapiens chromosome 18, clone RP11-909B2, complete sequence
          Length = 209251

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 210    gggaggcccaaggaggaggag 230
              |||||||||||||||||||||
Sbjct: 147611 gggaggcccaaggaggaggag 147591

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>gb|AC159132.2| Pan troglodytes BAC clone CH251-542P7 from chromosome unknown, complete
             sequence
          Length = 168297

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 210   gggaggcccaaggaggaggag 230
             |||||||||||||||||||||
Sbjct: 51098 gggaggcccaaggaggaggag 51078

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 403     catcgccagcacctggcgctg 423
               |||||||||||||||||||||
Sbjct: 2348969 catcgccagcacctggcgctg 2348989

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>gb|AC120353.9| Mus musculus chromosome 5, clone RP24-239E2, complete sequence
          Length = 182659

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 220   aggaggaggaggcagccgcca 240
             |||||||||||||||||||||
Sbjct: 56023 aggaggaggaggcagccgcca 56043

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>gb|AC005606.3| Homo sapiens chromosome 16, P1 clone 109-8C (LANL), complete sequence
          Length = 80662

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 204   gaagacgggaggcccaaggaggaggaggcagc 235
             |||| ||| ||||||||| |||||||||||||
Sbjct: 60191 gaaggcggtaggcccaagaaggaggaggcagc 60160

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>ref|XM_414520.1| PREDICTED: Gallus gallus similar to 2010005A06Rik protein
           (LOC416194), mRNA
          Length = 4071

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 aagctctggctgaagacggg 212
           ||||||||||||||||||||
Sbjct: 953 aagctctggctgaagacggg 934

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>gb|AY676328.1| Gallus gallus protocadherin mRNA, complete cds
          Length = 3150

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 193  aagctctggctgaagacggg 212
            ||||||||||||||||||||
Sbjct: 1505 aagctctggctgaagacggg 1486

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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     acatggaaaagctctggctg 204
               ||||||||||||||||||||
Sbjct: 2564097 acatggaaaagctctggctg 2564078

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>gb|AC161216.4| Mus musculus chromosome 7, clone RP23-8K23, complete sequence
          Length = 228889

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    ttgaatcagggaagaaggca 374
              ||||||||||||||||||||
Sbjct: 193750 ttgaatcagggaagaaggca 193731

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>ref|NM_178167.2| Homo sapiens zinc finger protein 598 (ZNF598), mRNA
          Length = 3210

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 204  gaagacgggaggcccaaggaggaggaggcagc 235
            |||| ||| ||||||||| |||||||||||||
Sbjct: 1120 gaaggcggtaggcccaagaaggaggaggcagc 1151

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>gb|BC010990.2| Homo sapiens zinc finger protein 598, mRNA (cDNA clone
           IMAGE:3939824), partial cds
          Length = 2607

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 204 gaagacgggaggcccaaggaggaggaggcagc 235
           |||| ||| ||||||||| |||||||||||||
Sbjct: 392 gaaggcggtaggcccaagaaggaggaggcagc 423

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>gb|AC147052.2| Pan troglodytes BAC clone RP43-143G1 from 7, complete sequence
          Length = 170236

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   caggctccactcctggagga 278
             ||||||||||||||||||||
Sbjct: 70055 caggctccactcctggagga 70036

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>ref|XM_738817.1| Plasmodium chabaudi chabaudi hypothetical protein (PC105513.00.0)
           partial mRNA
          Length = 1142

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 298 acaaaggaaagaagtatgat 317
           ||||||||||||||||||||
Sbjct: 218 acaaaggaaagaagtatgat 237

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>ref|XM_739041.1| Plasmodium chabaudi chabaudi hypothetical protein (PC100198.00.0)
           partial mRNA
          Length = 307

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 298 acaaaggaaagaagtatgat 317
           ||||||||||||||||||||
Sbjct: 218 acaaaggaaagaagtatgat 237

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>gb|AC102077.7| Mus musculus chromosome 7, clone RP23-423B21, complete sequence
          Length = 229721

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   ttgaatcagggaagaaggca 374
             ||||||||||||||||||||
Sbjct: 90100 ttgaatcagggaagaaggca 90081

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>gb|AC146125.2| Pan troglodytes BAC clone RP43-4K13 from 7, complete sequence
          Length = 172424

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   caggctccactcctggagga 278
             ||||||||||||||||||||
Sbjct: 29714 caggctccactcctggagga 29695

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>gb|BC010243.1| Homo sapiens cDNA clone IMAGE:3463566, **** WARNING: chimeric clone
           ****
          Length = 2629

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 204 gaagacgggaggcccaaggaggaggaggcagc 235
           |||| ||| ||||||||| |||||||||||||
Sbjct: 425 gaaggcggtaggcccaagaaggaggaggcagc 456

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>emb|AL158011.13| Human DNA sequence from clone GS1-215N23 on chromosome 1q24.1-31.1
              Contains the 3' end of the C1orf19 gene for chromosome 1
              open reading frame 19, complete sequence
          Length = 169048

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    gggaggcccaaggaggagga 229
              ||||||||||||||||||||
Sbjct: 143527 gggaggcccaaggaggagga 143508

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>gb|BC050477.1| Homo sapiens zinc finger protein 598, mRNA (cDNA clone MGC:54362
            IMAGE:6055142), complete cds
          Length = 3210

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 204  gaagacgggaggcccaaggaggaggaggcagc 235
            |||| ||| ||||||||| |||||||||||||
Sbjct: 1120 gaaggcggtaggcccaagaaggaggaggcagc 1151

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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 359     atcagggaagaaggcagaca 378
               ||||||||||||||||||||
Sbjct: 1471414 atcagggaagaaggcagaca 1471433

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>gb|AC135611.25| Pan troglodytes clone rp43-14h17, complete sequence
          Length = 215721

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    cagcacctggcgctgatgag 428
              ||||||||||||||||||||
Sbjct: 146113 cagcacctggcgctgatgag 146094

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>emb|BX511303.8| Zebrafish DNA sequence from clone DKEY-227L13 in linkage group 14,
              complete sequence
          Length = 190512

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    tgatgaggagcttgcggtgc 137
              ||||||||||||||||||||
Sbjct: 121955 tgatgaggagcttgcggtgc 121936

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>gb|AC016830.5| Homo sapiens chromosome 22 clone b81b3 map 22q11, complete sequence
          Length = 192720

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   cagcacctggcgctgatgag 428
             ||||||||||||||||||||
Sbjct: 59312 cagcacctggcgctgatgag 59293

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>gb|AC016027.15| Homo sapiens chromosome 22 clone b476c20 map 22q11, complete sequence
          Length = 174991

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   cagcacctggcgctgatgag 428
             ||||||||||||||||||||
Sbjct: 54593 cagcacctggcgctgatgag 54574

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    ccaaggaggaggaggcagcc 236
              ||||||||||||||||||||
Sbjct: 280010 ccaaggaggaggaggcagcc 279991

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    ccaaggaggaggaggcagcc 236
              ||||||||||||||||||||
Sbjct: 259302 ccaaggaggaggaggcagcc 259283

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>gb|DQ008178.1| Panorpa multifasciaria isolate Pm12 18S ribosomal RNA gene, partial
            sequence
          Length = 1843

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  gcaggctccactcctggagg 277
            ||||||||||||||||||||
Sbjct: 1215 gcaggctccactcctggagg 1196

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>dbj|AB085460.1| Uncultured bacterium gene for putative formyltetrahydrofolate
           synthetase, partial cds, clone:FNF03
          Length = 1029

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 ggaaaagctctggctgaaga 208
           ||||||||||||||||||||
Sbjct: 850 ggaaaagctctggctgaaga 869

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>dbj|AB085310.1| Uncultured bacterium gene for putative formyltetrahydrofolate
           synthetase, partial cds, clone:BNH01
          Length = 1057

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 ggaaaagctctggctgaaga 208
           ||||||||||||||||||||
Sbjct: 854 ggaaaagctctggctgaaga 873

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>dbj|AB085309.1| Uncultured bacterium gene for putative formyltetrahydrofolate
           synthetase, partial cds, clone:BNG12
          Length = 1057

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 ggaaaagctctggctgaaga 208
           ||||||||||||||||||||
Sbjct: 854 ggaaaagctctggctgaaga 873

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>gb|AC009481.4|AC009481 Homo sapiens BAC clone RP11-303D3 from 1, complete sequence
          Length = 191896

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   gggaggcccaaggaggagga 229
             ||||||||||||||||||||
Sbjct: 81586 gggaggcccaaggaggagga 81605

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>gb|AY938254.1| Uncultured eukaryote clone ENI47296.00075 18S ribosomal RNA gene,
           partial sequence
          Length = 597

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 gcaggctccactcctggagg 277
           ||||||||||||||||||||
Sbjct: 553 gcaggctccactcctggagg 534

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>gb|AY956324.1| Blastocystis hominis isolate 418 18S ribosomal RNA gene, partial
            sequence
          Length = 1666

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  gcaggctccactcctggagg 277
            ||||||||||||||||||||
Sbjct: 1101 gcaggctccactcctggagg 1082

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>dbj|AK024487.1| Homo sapiens mRNA for FLJ00086 protein, partial cds
          Length = 4456

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 204  gaagacgggaggcccaaggaggaggaggcagc 235
            |||| ||| ||||||||| |||||||||||||
Sbjct: 1904 gaaggcggtaggcccaagaaggaggaggcagc 1935

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>gb|AC131315.16| Mus musculus chromosome 7, clone RP24-535I10, complete sequence
          Length = 213958

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   ttgaatcagggaagaaggca 374
             ||||||||||||||||||||
Sbjct: 45043 ttgaatcagggaagaaggca 45062

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>dbj|AK105293.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G09, full
           insert sequence
          Length = 3799

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 209 cgggaggcccaaggaggagg 228
           ||||||||||||||||||||
Sbjct: 623 cgggaggcccaaggaggagg 604

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>dbj|AK099132.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023051M04, full
           insert sequence
          Length = 3065

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 217 ccaaggaggaggaggcagcc 236
           ||||||||||||||||||||
Sbjct: 753 ccaaggaggaggaggcagcc 772

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>dbj|AK072914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150I16, full
           insert sequence
          Length = 3183

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 217 ccaaggaggaggaggcagcc 236
           ||||||||||||||||||||
Sbjct: 868 ccaaggaggaggaggcagcc 887

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>gb|AC115901.8| Mus musculus chromosome 5, clone RP24-465E5, complete sequence
          Length = 219828

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    tacatggaaaagctctggct 203
              ||||||||||||||||||||
Sbjct: 111135 tacatggaaaagctctggct 111116

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    ccaaggaggaggaggcagcc 236
              ||||||||||||||||||||
Sbjct: 259302 ccaaggaggaggaggcagcc 259283

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    ccaaggaggaggaggcagcc 236
              ||||||||||||||||||||
Sbjct: 280010 ccaaggaggaggaggcagcc 279991

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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   ccaaggaggaggaggcagcc 236
             ||||||||||||||||||||
Sbjct: 45691 ccaaggaggaggaggcagcc 45710

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>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152222

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   ccaaggaggaggaggcagcc 236
             ||||||||||||||||||||
Sbjct: 13061 ccaaggaggaggaggcagcc 13042

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>gb|DQ133053.1| Trichobius hirsutulus 18S ribosomal RNA gene, partial sequence
          Length = 1442

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 gcaggctccactcctggagg 277
           ||||||||||||||||||||
Sbjct: 811 gcaggctccactcctggagg 792

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>gb|AY446940.1| Callipallene novaezelandiae 18S ribosomal RNA gene, partial
           sequence
          Length = 902

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 gcaggctccactcctggagg 277
           ||||||||||||||||||||
Sbjct: 277 gcaggctccactcctggagg 258

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>dbj|AP000344.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1269D1
          Length = 186421

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    cagcacctggcgctgatgag 428
              ||||||||||||||||||||
Sbjct: 100339 cagcacctggcgctgatgag 100320


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,371,066
Number of Sequences: 3902068
Number of extensions: 4371066
Number of successful extensions: 98063
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 97709
Number of HSP's gapped (non-prelim): 348
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result