ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags31d10 |
|---|---|
| Clone Library Name | barley_pub |
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 74.7 bits (182), Expect = 8e-14 Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 1/94 (1%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 E+FVG + +D E +L +F + G I ++RLMM+P+T N+G+AF+ F T E A+ AV Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222 Query: 325 LKNXMVR-GKQCGVAPSRDNDTLFVGNICKTWTK 423 N +R GK GV S N+ LFVG+I K+ TK Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTK 256 Score = 40.0 bits (92), Expect = 0.002 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 15/107 (14%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGE-ITEVRLMMNPVTKK-NKGFAFLRFETVEQAKRAVS 321 +FVG + K T+ + + FS+V E +T+V L P KK N+GF FL +E + A +A Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304 Query: 322 DLKNXMVR-----GKQCGVAPSRDND--------TLFVGNICKTWTK 423 L + V+ G P D D LFV N+ T T+ Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTE 351
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 74.7 bits (182), Expect = 8e-14 Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 1/94 (1%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 E+FVG + +D E +L +F + G I ++RLMM+P+T N+G+AF+ F T E A+ AV Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222 Query: 325 LKNXMVR-GKQCGVAPSRDNDTLFVGNICKTWTK 423 N +R GK GV S N+ LFVG+I K+ TK Sbjct: 223 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTK 256 Score = 40.0 bits (92), Expect = 0.002 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 15/107 (14%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGE-ITEVRLMMNPVTKK-NKGFAFLRFETVEQAKRAVS 321 +FVG + K T+ + + FS+V E +T+V L P KK N+GF FL +E + A +A Sbjct: 245 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 304 Query: 322 DLKNXMVR-----GKQCGVAPSRDND--------TLFVGNICKTWTK 423 L + V+ G P D D LFV N+ T T+ Sbjct: 305 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTE 351
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 74.7 bits (182), Expect = 8e-14 Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 1/94 (1%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 E+FVG + +D E +L +F + G I ++RLMM+P+T N+G+AF+ F T E A+ AV Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132 Query: 325 LKNXMVR-GKQCGVAPSRDNDTLFVGNICKTWTK 423 N +R GK GV S N+ LFVG+I K+ TK Sbjct: 133 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTK 166 Score = 40.0 bits (92), Expect = 0.002 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 15/107 (14%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGE-ITEVRLMMNPVTKK-NKGFAFLRFETVEQAKRAVS 321 +FVG + K T+ + + FS+V E +T+V L P KK N+GF FL +E + A +A Sbjct: 155 LFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARR 214 Query: 322 DLKNXMVR-----GKQCGVAPSRDND--------TLFVGNICKTWTK 423 L + V+ G P D D LFV N+ T T+ Sbjct: 215 RLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTE 261
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 69.7 bits (169), Expect = 3e-12 Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 1/94 (1%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 EVFVG + +D E +L +F + G I ++RLMM+P++ +N+G+AF+ F E A+ AV Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225 Query: 325 LKNXMVR-GKQCGVAPSRDNDTLFVGNICKTWTK 423 + +R GK GV S N+ LFVG+I K TK Sbjct: 226 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTK 259 Score = 38.1 bits (87), Expect = 0.008 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGE-ITEVRLMMNPVTKK-NKGFAFLRFETVEQAKRAVS 321 +FVG + K+ T+ ++ + FS+V E + +V L P KK N+GF FL +E + A +A Sbjct: 248 LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 307 Query: 322 DLKNXMVR 345 L + V+ Sbjct: 308 RLMSGKVK 315
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 68.2 bits (165), Expect = 8e-12 Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 E+F+G L +D E +L + ++G+I E+R+MM+ N+G+AF+ F ++AK A+ Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115 Query: 325 LKNXMVR-GKQCGVAPSRDNDTLFVGNICKT 414 L N +R G+ GV S DN LFVG I KT Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKT 146 Score = 30.0 bits (66), Expect = 2.3 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITE--VRLMMNPVTK---KNKGFAFLRFETVEQAKR 312 +FVGG+ K + + SE+ ++TE V +++ P KN+GFAF+ +E+ A Sbjct: 138 LFVGGIPKTKKREE---ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAM 194 Query: 313 A 315 A Sbjct: 195 A 195
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 66.6 bits (161), Expect = 2e-11 Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 E+F+G L +D E +L + ++G+I E+R+MM+ N+G+AF+ F +AK A+ Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQ 115 Query: 325 LKNXMVR-GKQCGVAPSRDNDTLFVGNICKT 414 L N +R G+ GV S DN LFVG I KT Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKT 146 Score = 30.0 bits (66), Expect = 2.3 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITE--VRLMMNPVTK---KNKGFAFLRFETVEQAKR 312 +FVGG+ K + + SE+ ++TE V +++ P KN+GFAF+ +E+ A Sbjct: 138 LFVGGIPKTKKREE---ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAM 194 Query: 313 A 315 A Sbjct: 195 A 195
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 66.2 bits (160), Expect = 3e-11 Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 E+F+G L +D E +L + ++G+I E+R+MM+ N+G+AF+ F +AK A+ Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115 Query: 325 LKNXMVR-GKQCGVAPSRDNDTLFVGNICKT 414 L N +R G+ GV S DN LFVG I KT Sbjct: 116 LNNYEIRNGRLLGVCASVDNCRLFVGGIPKT 146 Score = 30.0 bits (66), Expect = 2.3 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITE--VRLMMNPVTK---KNKGFAFLRFETVEQAKR 312 +FVGG+ K + + SE+ ++TE V +++ P KN+GFAF+ +E+ A Sbjct: 138 LFVGGIPKTKKREE---ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAM 194 Query: 313 A 315 A Sbjct: 195 A 195
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 66.2 bits (160), Expect = 3e-11 Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 E+F+G L +D E +L + ++G+I E+RLMM+ N+G+AF+ F ++AK A+ Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115 Query: 325 LKNXMVR-GKQCGVAPSRDNDTLFVGNICKT 414 L N +R G+ GV S DN LF G I KT Sbjct: 116 LNNYEIRTGRLLGVCASVDNCRLFRGGIPKT 146
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 63.9 bits (154), Expect = 1e-10 Identities = 29/77 (37%), Positives = 48/77 (62%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FV G+ E +L+++FS+ G +T VR+M PVTK ++GF FL F TVE+A A+ + Sbjct: 102 DLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDN 161 Query: 325 LKNXMVRGKQCGVAPSR 375 L + G+ V ++ Sbjct: 162 LNSQEFYGRVLNVQKAK 178
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 60.8 bits (146), Expect = 1e-09 Identities = 28/77 (36%), Positives = 49/77 (63%) Frame = +1 Query: 121 AHXKRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVE 300 A +R+E+++F+GGL D T+ DL+ FS+ GE+ + L ++P+T +++GF F+ F+ E Sbjct: 90 AAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149 Query: 301 QAKRAVSDLKNXMVRGK 351 + V D K + GK Sbjct: 150 SVDK-VMDQKEHKLNGK 165 Score = 48.5 bits (114), Expect = 6e-06 Identities = 21/56 (37%), Positives = 32/56 (57%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKR 312 ++FVGGL D E +R+ F GE+ + L M+ T K +GF F+ F+ E K+ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 60.8 bits (146), Expect = 1e-09 Identities = 28/77 (36%), Positives = 49/77 (63%) Frame = +1 Query: 121 AHXKRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVE 300 A +R+E+++F+GGL D T+ DL+ FS+ GE+ + L ++P+T +++GF F+ F+ E Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149 Query: 301 QAKRAVSDLKNXMVRGK 351 + V D K + GK Sbjct: 150 SVDK-VMDQKEHKLNGK 165 Score = 48.5 bits (114), Expect = 6e-06 Identities = 21/56 (37%), Positives = 32/56 (57%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKR 312 ++FVGGL D E +R+ F GE+ + L M+ T K +GF F+ F+ E K+ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 60.1 bits (144), Expect = 2e-09 Identities = 29/75 (38%), Positives = 48/75 (64%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 E ++FVGGL D E L +VFS+ G+I+EV ++ + T++++GF F+ FE ++ AK A+ Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 319 SDLKNXMVRGKQCGV 363 + V G+Q V Sbjct: 65 MAMNGKSVDGRQIRV 79
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 60.1 bits (144), Expect = 2e-09 Identities = 29/75 (38%), Positives = 48/75 (64%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 E ++FVGGL D E L +VFS+ G+I+EV ++ + T++++GF F+ FE ++ AK A+ Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 319 SDLKNXMVRGKQCGV 363 + V G+Q V Sbjct: 65 MAMNGKSVDGRQIRV 79
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 59.7 bits (143), Expect = 3e-09 Identities = 27/77 (35%), Positives = 49/77 (63%) Frame = +1 Query: 121 AHXKRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVE 300 A +R+E+++F+GGL D T+ DL+ FS+ G++ + L ++P+T +++GF F+ F+ E Sbjct: 88 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147 Query: 301 QAKRAVSDLKNXMVRGK 351 + V D K + GK Sbjct: 148 SVDK-VMDQKEHKLNGK 163 Score = 48.5 bits (114), Expect = 6e-06 Identities = 21/56 (37%), Positives = 32/56 (57%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKR 312 ++FVGGL D E +R+ F GE+ + L M+ T K +GF F+ F+ E K+ Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 59.3 bits (142), Expect = 4e-09 Identities = 28/91 (30%), Positives = 50/91 (54%) Frame = +1 Query: 115 VKAHXKRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFET 294 +K+ +K +F+G L + TE L+ +F + ++ ++ VTKK+ G +L FE Sbjct: 82 LKSFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFED 141 Query: 295 VEQAKRAVSDLKNXMVRGKQCGVAPSRDNDT 387 E+A++A+ +L V GK+ + PS N T Sbjct: 142 KEEAEKAMEELNYTKVNGKEIRIMPSLRNTT 172 Score = 38.1 bits (87), Expect = 0.008 Identities = 22/79 (27%), Positives = 39/79 (49%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ L T D+ FSEVG I + L + TK +AF+ ++ +++A+ Sbjct: 305 IFIKNLPTITTRDDILNFFSEVGPIKSIYL--SNATKVKYLWAFVTYKNSSDSEKAIKRY 362 Query: 328 KNXMVRGKQCGVAPSRDND 384 N RGK+ V ++D + Sbjct: 363 NNFYFRGKKLLVTRAQDKE 381
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 59.3 bits (142), Expect = 4e-09 Identities = 29/75 (38%), Positives = 48/75 (64%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 E ++FVGGL D E L +VFS+ G+I+EV ++ + T++++GF F+ FE ++ AK A+ Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 319 SDLKNXMVRGKQCGV 363 + V G+Q V Sbjct: 65 MAMNGKSVDGRQIRV 79
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 59.3 bits (142), Expect = 4e-09 Identities = 29/75 (38%), Positives = 48/75 (64%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 E ++FVGGL D E L +VFS+ G+I+EV ++ + T++++GF F+ FE ++ AK A+ Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 319 SDLKNXMVRGKQCGV 363 + V G+Q V Sbjct: 65 MAMNGKSVDGRQIRV 79
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 59.3 bits (142), Expect = 4e-09 Identities = 29/75 (38%), Positives = 48/75 (64%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 E ++FVGGL D E L +VFS+ G+I+EV ++ + T++++GF F+ FE ++ AK A+ Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 319 SDLKNXMVRGKQCGV 363 + V G+Q V Sbjct: 65 MAMNGKSVDGRQIRV 79
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 58.9 bits (141), Expect = 5e-09 Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 4/100 (4%) Frame = +1 Query: 118 KAHXKRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFE-- 291 KA ++ ++F+GGL+ D TE +LR+ F + G +T++++M +P T +++GF FL FE Sbjct: 151 KADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKP 210 Query: 292 -TVEQAKRAVSDLKNXMVRGKQCGVAPSRD-NDTLFVGNI 405 +V++ + L ++ K+ +D +FVG I Sbjct: 211 SSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGI 250 Score = 42.0 bits (97), Expect = 6e-04 Identities = 17/59 (28%), Positives = 35/59 (59%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKR 312 K ++FVGG+ D + + FS+ G I + +LM++ T +++GF F+ +++ + R Sbjct: 241 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 299
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 58.5 bits (140), Expect = 6e-09 Identities = 30/81 (37%), Positives = 49/81 (60%) Frame = +1 Query: 142 FEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++VF+GGL + TE+DLR F+ G++TEV +M + KK++GF FL FE E + V+ Sbjct: 96 YKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEE-ESSVEHVT 154 Query: 322 DLKNXMVRGKQCGVAPSRDND 384 + + + GKQ + + D Sbjct: 155 NERYINLNGKQVEIKKAEPRD 175 Score = 38.1 bits (87), Expect = 0.008 Identities = 16/48 (33%), Positives = 30/48 (62%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRF 288 ++FVGGL + T+ +L + F G+I + +M N + +++GF F+ F Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTF 55
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 57.8 bits (138), Expect = 1e-08 Identities = 27/75 (36%), Positives = 46/75 (61%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVGG+D ESDLRK FS+ G + EV++ +N +KG+ F+ FET E A++ + + Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKI-VNDRAGVSKGYGFVTFETQEDAQKILQEA 93 Query: 328 KNXMVRGKQCGVAPS 372 + + K+ + P+ Sbjct: 94 EKLNYKDKKLNIGPA 108
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 57.8 bits (138), Expect = 1e-08 Identities = 27/75 (36%), Positives = 46/75 (61%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVGG+D ESDLRK FS+ G + EV++ +N +KG+ F+ FET E A++ + + Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKI-VNDRAGVSKGYGFVTFETQEDAQKILQEA 93 Query: 328 KNXMVRGKQCGVAPS 372 + + K+ + P+ Sbjct: 94 EKLNYKDKKLNIGPA 108
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 57.4 bits (137), Expect = 1e-08 Identities = 28/69 (40%), Positives = 41/69 (59%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++F+GGL+ + E L VF + G I EV LM + T K++GFAF+ FE+ AK A D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 325 LKNXMVRGK 351 + + GK Sbjct: 69 MNGKSLDGK 77
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 57.4 bits (137), Expect = 1e-08 Identities = 22/81 (27%), Positives = 52/81 (64%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG LD TE+ L ++F+ +G + +R+ + VT+++ G+A++ F +E ++A+ +L Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141 Query: 328 KNXMVRGKQCGVAPSRDNDTL 390 +++G+ C + S+ + +L Sbjct: 142 NYTLIKGRPCRIMWSQRDPSL 162 Score = 45.8 bits (107), Expect = 4e-05 Identities = 25/79 (31%), Positives = 43/79 (54%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAK 309 K + +F+ L + + L+ FS G IT ++M + K+KGF F+ + T E+A Sbjct: 360 KYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEAN 418 Query: 310 RAVSDLKNXMVRGKQCGVA 366 +AV+++ M+ GK VA Sbjct: 419 KAVTEMNQRMLAGKPLYVA 437 Score = 44.7 bits (104), Expect = 9e-05 Identities = 22/69 (31%), Positives = 40/69 (57%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 V++ LD + TE + +F + GEIT + L+ + K +GF F+ + E A++AV +L Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDEL 321 Query: 328 KNXMVRGKQ 354 + +GK+ Sbjct: 322 NDKEYKGKK 330
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 57.4 bits (137), Expect = 1e-08 Identities = 29/75 (38%), Positives = 46/75 (61%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV L +TE DL K+FS+ G ++E+ ++ +TKK KGFAF+ F E A +A S++ Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463 Query: 328 KNXMVRGKQCGVAPS 372 + +G+ V PS Sbjct: 464 DGQVFQGRMLHVLPS 478 Score = 42.7 bits (99), Expect = 3e-04 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNK-------GFAFLRFETVEQA 306 +F+ L+ D TE L++VFS+VG + + KKNK GF F+ + EQA Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISK----KKNKAGVLLSMGFGFVEYRKPEQA 787 Query: 307 KRAVSDLKNXMVRGKQCGV 363 ++A+ L+ +V G + V Sbjct: 788 QKALKQLQGHVVDGHKLEV 806 Score = 36.6 bits (83), Expect = 0.025 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPV-TKKNKGFAFLRFETVEQA 306 K+ ++ V + A ++R++FS GE+ VRL T ++GF F+ F T + A Sbjct: 828 KQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA 887 Query: 307 KRAVSDL 327 KRA + L Sbjct: 888 KRAFNAL 894
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 57.0 bits (136), Expect = 2e-08 Identities = 26/75 (34%), Positives = 46/75 (61%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVGG+D E+DLRK FS+ G + EV++ +N +KG+ F+ FET E A++ + + Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKI-VNDRAGVSKGYGFITFETQEDAQKILQEA 93 Query: 328 KNXMVRGKQCGVAPS 372 + + K+ + P+ Sbjct: 94 EKLNYKDKKLNIGPA 108
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 55.8 bits (133), Expect = 4e-08 Identities = 27/75 (36%), Positives = 47/75 (62%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 E ++F+GGL+ + E L + F++ G I+EV ++ + TK+++GF F+ FE V+ AK A+ Sbjct: 4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAM 63 Query: 319 SDLKNXMVRGKQCGV 363 + V G+Q V Sbjct: 64 MAMNGKSVDGRQIRV 78
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 55.8 bits (133), Expect = 4e-08 Identities = 28/77 (36%), Positives = 46/77 (59%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++F+GGL+++ E L+ VF + G I+EV L++ T K++GFAF+ FE AK A D Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEV-LLIKDRTSKSRGFAFITFENPADAKNAAKD 67 Query: 325 LKNXMVRGKQCGVAPSR 375 + + GK V ++ Sbjct: 68 MNGKSLHGKAIKVEQAK 84
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 55.5 bits (132), Expect = 5e-08 Identities = 26/69 (37%), Positives = 40/69 (57%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++F+GGL+ + E L VF + G I E+ LM + T K++GFAF+ FE+ AK D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 325 LKNXMVRGK 351 + + GK Sbjct: 69 MNGKSLDGK 77
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 55.1 bits (131), Expect = 7e-08 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGGL+ +ATE +R+ F + GEI + L ++P K +GF F+ F+ + K+ V + Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKK-VLE 218 Query: 325 LKNXMVRGKQCGV 363 K V G +C + Sbjct: 219 KKFHTVSGSKCEI 231 Score = 47.8 bits (112), Expect = 1e-05 Identities = 22/69 (31%), Positives = 42/69 (60%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGGL D ++ DL+ F++ GE+ + + M+P T +++GF F+ F+ ++ V D Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK-VLD 134 Query: 325 LKNXMVRGK 351 K + G+ Sbjct: 135 QKEHRLDGR 143
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 54.7 bits (130), Expect = 9e-08 Identities = 25/75 (33%), Positives = 49/75 (65%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVGG+ D TE+DL +VFS G + +++++ +KG+ F+ FET ++A+R +D Sbjct: 35 IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQRLQADG 93 Query: 328 KNXMVRGKQCGVAPS 372 + ++R ++ +AP+ Sbjct: 94 ECVVLRDRKLNIAPA 108
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 54.3 bits (129), Expect = 1e-07 Identities = 26/69 (37%), Positives = 40/69 (57%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++F+GGL+ + E L VF + G I E+ LM + T K++GFAF+ E+ AK A D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 325 LKNXMVRGK 351 + + GK Sbjct: 69 MNGKSLDGK 77
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 53.9 bits (128), Expect = 1e-07 Identities = 26/68 (38%), Positives = 39/68 (57%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVGGL + TE D+ VFS+ GEI + L+ + T K+KGF FL +E AV + Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 328 KNXMVRGK 351 ++G+ Sbjct: 98 NGIKIKGR 105
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 53.9 bits (128), Expect = 1e-07 Identities = 27/75 (36%), Positives = 45/75 (60%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV L ++E DL K+FS G ++E+ ++ +TKK KGFAF+ F E A +A +++ Sbjct: 402 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 461 Query: 328 KNXMVRGKQCGVAPS 372 + +G+ V PS Sbjct: 462 DGQVFQGRMLHVLPS 476 Score = 39.3 bits (90), Expect = 0.004 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 7/79 (8%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNK-------GFAFLRFETVEQA 306 +F+ L+ TE L+ VFS+VG I + KKNK GF F+ ++ EQA Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISK----KKNKAGVLLSMGFGFVEYKKPEQA 779 Query: 307 KRAVSDLKNXMVRGKQCGV 363 ++A+ L+ V G + V Sbjct: 780 QKALKQLQGHTVDGHKLEV 798 Score = 37.0 bits (84), Expect = 0.019 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPV-TKKNKGFAFLRFETVEQA 306 K+ ++ V + A + ++R++FS GE+ VRL T ++GF F+ F T + A Sbjct: 820 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 879 Query: 307 KRAVSDL 327 K+A + L Sbjct: 880 KKAFNAL 886
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 53.1 bits (126), Expect = 3e-07 Identities = 33/86 (38%), Positives = 49/86 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVG L D TE ++RK+F + G+ EV + K+KGF F+R ET A+ A +L Sbjct: 78 LFVGNLPPDITEEEMRKLFEKYGKAGEVFI------HKDKGFGFIRLETRTLAEIAKVEL 131 Query: 328 KNXMVRGKQCGVAPSRDNDTLFVGNI 405 N +RGKQ V + + +L V N+ Sbjct: 132 DNMPLRGKQLRVRFACHSASLTVRNL 157
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 53.1 bits (126), Expect = 3e-07 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Frame = +1 Query: 145 EVFVGGLDKDA-TESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++FVGGL+ ++ TE +R+ F E GEI + L M+P K +GF F+ F+ E K+ V Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK-VL 211 Query: 322 DLKNXMVRGKQCGV 363 + K V G +C + Sbjct: 212 EKKFHTVSGSKCEI 225 Score = 48.1 bits (113), Expect = 8e-06 Identities = 22/69 (31%), Positives = 42/69 (60%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGGL D ++ DL+ F++ GE+ + + M+P T +++GF F+ F+ ++ V D Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK-VLD 127 Query: 325 LKNXMVRGK 351 K + G+ Sbjct: 128 QKEHRLDGR 136
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 53.1 bits (126), Expect = 3e-07 Identities = 33/86 (38%), Positives = 49/86 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVG L D TE ++RK+F + G+ EV + K+KGF F+R ET A+ A +L Sbjct: 81 LFVGNLPPDITEEEMRKLFEKYGKAGEVFI------HKDKGFGFIRLETRTLAEIAKVEL 134 Query: 328 KNXMVRGKQCGVAPSRDNDTLFVGNI 405 N +RGKQ V + + +L V N+ Sbjct: 135 DNMPLRGKQLRVRFACHSASLTVRNL 160
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 53.1 bits (126), Expect = 3e-07 Identities = 33/86 (38%), Positives = 49/86 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVG L D TE ++RK+F + G+ EV + K+KGF F+R ET A+ A +L Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFI------HKDKGFGFIRLETRTLAEIAKVEL 129 Query: 328 KNXMVRGKQCGVAPSRDNDTLFVGNI 405 N +RGKQ V + + +L V N+ Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNL 155
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 53.1 bits (126), Expect = 3e-07 Identities = 33/86 (38%), Positives = 49/86 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVG L D TE ++RK+F + G+ EV + K+KGF F+R ET A+ A +L Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFI------HKDKGFGFIRLETRTLAEIAKVEL 129 Query: 328 KNXMVRGKQCGVAPSRDNDTLFVGNI 405 N +RGKQ V + + +L V N+ Sbjct: 130 DNMPLRGKQLRVRFACHSASLTVRNL 155
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 53.1 bits (126), Expect = 3e-07 Identities = 21/81 (25%), Positives = 48/81 (59%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L+ +E+ L +FS +G ++ +R+ + +TK + G+A++ F E ++A+ L Sbjct: 39 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 98 Query: 328 KNXMVRGKQCGVAPSRDNDTL 390 ++G+ C + S+ + +L Sbjct: 99 NYTPIKGRLCRIMWSQRDPSL 119 Score = 46.6 bits (109), Expect = 2e-05 Identities = 27/85 (31%), Positives = 44/85 (51%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAK 309 K + +FV LD + L + F+ G IT ++M K+KGF F+ F T E+A Sbjct: 317 KYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEAT 375 Query: 310 RAVSDLKNXMVRGKQCGVAPSRDND 384 +A+++ +V GK VA ++ D Sbjct: 376 KAITEKNQQIVAGKPLYVAIAQRKD 400 Score = 41.6 bits (96), Expect = 8e-04 Identities = 24/80 (30%), Positives = 38/80 (47%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAK 309 K+ +F+ L D L FS G+I ++ + K+KGF F+ FE AK Sbjct: 121 KKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAK 179 Query: 310 RAVSDLKNXMVRGKQCGVAP 369 A+ L ++ G++ VAP Sbjct: 180 EAIDALNGMLLNGQEIYVAP 199
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 52.8 bits (125), Expect = 3e-07 Identities = 25/70 (35%), Positives = 40/70 (57%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFVG L +ATE DL F G+I +RL +P + + KGF ++ F ++ AK+ V ++ Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EM 426 Query: 328 KNXMVRGKQC 357 + G+ C Sbjct: 427 NGHFIAGRPC 436 Score = 45.4 bits (106), Expect = 5e-05 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 23/109 (21%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS-- 321 VFVG L + + L + F E G I R++M+ + ++KG+ ++ FET E AK AV+ Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324 Query: 322 ------------DLKN---------XMVRGKQCGVAPSRDNDTLFVGNI 405 DL N R G S +DT+FVGN+ Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNL 373
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 52.4 bits (124), Expect = 4e-07 Identities = 25/68 (36%), Positives = 39/68 (57%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+GGL + TE D+ VFS+ GEI + L+ + T K+KGF FL +E AV + Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 328 KNXMVRGK 351 ++G+ Sbjct: 98 NGIKIKGR 105
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 52.4 bits (124), Expect = 4e-07 Identities = 23/74 (31%), Positives = 42/74 (56%) Frame = +1 Query: 142 FEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++V++G L K T L+ FSE G++ ++ P T K+ GF F+ F + E+ + A+ Sbjct: 184 YKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQ 243 Query: 322 DLKNXMVRGKQCGV 363 L N ++ G++ V Sbjct: 244 ALNNSVLEGQKIRV 257 Score = 39.3 bits (90), Expect = 0.004 Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 20/111 (18%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG + ++ +LR + E G I +M + + +++ F F+ +TVE A + L Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKL 145 Query: 328 KNXMVRGKQ------------CGVAPSRDNDTLFV--------GNICKTWT 420 + + G++ +A ++ D+ FV GN+ KT T Sbjct: 146 NDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVT 196
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 51.6 bits (122), Expect = 7e-07 Identities = 20/48 (41%), Positives = 36/48 (75%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRF 288 ++FVGGL + T+ +R+ +S+ GEIT++ +M +P TK+++GF F+ F Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 51.2 bits (121), Expect = 1e-06 Identities = 23/71 (32%), Positives = 42/71 (59%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 K+ ++V L + T+ +L K+F + G I + ++ + +T K +G AF+RF E+A+ A Sbjct: 169 KDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEA 228 Query: 316 VSDLKNXMVRG 348 +S L N + G Sbjct: 229 ISALNNVIPEG 239 Score = 41.2 bits (95), Expect = 0.001 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 + V L +D T+ +L +F G I R+M + T + G+AF+ F + A+ A+ L Sbjct: 87 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSL 146 Query: 328 KNXMVRGKQCGVAPSR------DNDTLFVGNICKTWT 420 VR K+ V+ +R + L+V N+ +T T Sbjct: 147 NGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRTIT 183
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 50.8 bits (120), Expect = 1e-06 Identities = 23/78 (29%), Positives = 42/78 (53%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++++GGL E L+ FS +TE R+M N VT +++G+ F+ F + + A A+S Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 325 LKNXMVRGKQCGVAPSRD 378 + + G V ++D Sbjct: 92 MNGQELNGFNISVNVAKD 109
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 50.8 bits (120), Expect = 1e-06 Identities = 25/68 (36%), Positives = 41/68 (60%) Frame = +1 Query: 115 VKAHXKRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFET 294 +++ K +FVG LD + T++DL++ F +VG+I VRLM T K KGF F+ F Sbjct: 219 IQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278 Query: 295 VEQAKRAV 318 ++ +A+ Sbjct: 279 IDTCMKAM 286 Score = 28.9 bits (63), Expect = 5.1 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Frame = +1 Query: 169 KDATESDLRKVFSEVGEITEVRLMMNPVTK-KNKGFAFLRFETVEQAKRAV 318 K+ +E +++ + +E +IT + + M+ + +NKGFA++ F T + K A+ Sbjct: 134 KEVSEENIKPITTE--QITRIHMPMSKEKRFQNKGFAYVDFATEDALKLAL 182
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 50.8 bits (120), Expect = 1e-06 Identities = 25/68 (36%), Positives = 38/68 (55%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFVG + +ATE L+ +FSEVG + RL+ + T K KG+ F ++ E A A+ +L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 328 KNXMVRGK 351 G+ Sbjct: 78 NGREFSGR 85
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 50.8 bits (120), Expect = 1e-06 Identities = 22/72 (30%), Positives = 41/72 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 V+VG + + E +R F+ G I + + +P+T+K+KGFAF+ +E E A+ A+ + Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191 Query: 328 KNXMVRGKQCGV 363 ++ G+ V Sbjct: 192 NGALMGGRNIKV 203
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 50.8 bits (120), Expect = 1e-06 Identities = 25/80 (31%), Positives = 46/80 (57%) Frame = +1 Query: 133 RKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKR 312 R+ +F+ + ATE D RK+FS GE+ EV + ++ T ++KGFA++ F+ + A Sbjct: 327 RETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAAT 386 Query: 313 AVSDLKNXMVRGKQCGVAPS 372 A +L + +G+ + P+ Sbjct: 387 AFVELDKQIFQGRLLHILPA 406 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKK-----NKGFAFLRFETVEQAKR 312 +F+ L+ T L + F ++ P K+ + GF F F+T EQA Sbjct: 653 IFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANA 712 Query: 313 AVSDLKNXMVRG 348 +S ++ ++ G Sbjct: 713 VISAMEGTILDG 724
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 50.8 bits (120), Expect = 1e-06 Identities = 25/68 (36%), Positives = 38/68 (55%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFVG + +ATE L+ +FSEVG + RL+ + T K KG+ F ++ E A A+ +L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 328 KNXMVRGK 351 G+ Sbjct: 78 NGREFSGR 85
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 50.4 bits (119), Expect = 2e-06 Identities = 26/70 (37%), Positives = 42/70 (60%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKN 333 V GL TE DLR+VFS+ G I +V ++ + +++++GFAF+ FE V+ AK A Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181 Query: 334 XMVRGKQCGV 363 + G++ V Sbjct: 182 MELDGRRIRV 191
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 50.4 bits (119), Expect = 2e-06 Identities = 26/70 (37%), Positives = 42/70 (60%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKN 333 V GL TE DLR+VFS+ G I +V ++ + +++++GFAF+ FE V+ AK A Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181 Query: 334 XMVRGKQCGV 363 + G++ V Sbjct: 182 MELDGRRIRV 191
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 50.4 bits (119), Expect = 2e-06 Identities = 26/70 (37%), Positives = 42/70 (60%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKN 333 V GL TE DLR+VFS+ G I +V ++ + +++++GFAF+ FE V+ AK A Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181 Query: 334 XMVRGKQCGV 363 + G++ V Sbjct: 182 MELDGRRIRV 191
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 50.4 bits (119), Expect = 2e-06 Identities = 21/59 (35%), Positives = 39/59 (66%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++F+GGL + T+ LR F + G +T+ +M +P TK+++GF F+ + TVE+ A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72 Score = 46.2 bits (108), Expect = 3e-05 Identities = 24/73 (32%), Positives = 39/73 (53%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGG+ +D E LR F + G+I + +M + + K +GFAF+ F+ + + V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 325 LKNXMVRGKQCGV 363 K V G C V Sbjct: 165 -KYHTVNGHNCEV 176
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 50.4 bits (119), Expect = 2e-06 Identities = 21/59 (35%), Positives = 39/59 (66%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++F+GGL + T+ LR F + G +T+ +M +P TK+++GF F+ + TVE+ A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72 Score = 46.2 bits (108), Expect = 3e-05 Identities = 24/73 (32%), Positives = 39/73 (53%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGG+ +D E LR F + G+I + +M + + K +GFAF+ F+ + + V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 325 LKNXMVRGKQCGV 363 K V G C V Sbjct: 165 -KYHTVNGHNCEV 176
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/68 (36%), Positives = 38/68 (55%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFVG + +ATE L+ +FSEVG + RL+ + T K KG+ F ++ E A A+ +L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 328 KNXMVRGK 351 G+ Sbjct: 78 NGREFSGR 85
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 3/89 (3%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L D TE+ L + FS G I +R+ + +T+++ G+A++ F+ A+RA+ + Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 328 KNXMVRGKQCGVAPSRDNDTL---FVGNI 405 +++GK + S+ + +L VGNI Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI 101 Score = 45.4 bits (106), Expect = 5e-05 Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Frame = +1 Query: 130 KRKEF-EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQA 306 + KEF V++ +D + L+++F + G V++M + + K+KGF F+ FE E A Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDA 244 Query: 307 KRAVSDLKNXMVRGKQ 354 ++AV ++ + GKQ Sbjct: 245 QKAVDEMNGKELNGKQ 260 Score = 45.1 bits (105), Expect = 7e-05 Identities = 26/73 (35%), Positives = 41/73 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++V LD + LRK FS G IT ++MM ++KGF F+ F + E+A +AV+++ Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 328 KNXMVRGKQCGVA 366 +V K VA Sbjct: 354 NGRIVATKPLYVA 366 Score = 38.5 bits (88), Expect = 0.006 Identities = 19/69 (27%), Positives = 35/69 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ LDK L FS G I +++ + +KG+ F+ FET E A+RA+ + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 328 KNXMVRGKQ 354 ++ ++ Sbjct: 159 NGMLLNDRK 167
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 3/89 (3%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L D TE+ L + FS G I +R+ + +T+++ G+A++ F+ A+RA+ + Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 328 KNXMVRGKQCGVAPSRDNDTL---FVGNI 405 +++GK + S+ + +L VGNI Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI 101 Score = 45.4 bits (106), Expect = 5e-05 Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Frame = +1 Query: 130 KRKEF-EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQA 306 + KEF V++ +D + L+++F + G V++M + + K+KGF F+ FE E A Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDA 244 Query: 307 KRAVSDLKNXMVRGKQ 354 ++AV ++ + GKQ Sbjct: 245 QKAVDEMNGKELNGKQ 260 Score = 45.1 bits (105), Expect = 7e-05 Identities = 26/73 (35%), Positives = 41/73 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++V LD + LRK FS G IT ++MM ++KGF F+ F + E+A +AV+++ Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 328 KNXMVRGKQCGVA 366 +V K VA Sbjct: 354 NGRIVATKPLYVA 366 Score = 38.5 bits (88), Expect = 0.006 Identities = 19/69 (27%), Positives = 35/69 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ LDK L FS G I +++ + +KG+ F+ FET E A+RA+ + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 328 KNXMVRGKQ 354 ++ ++ Sbjct: 159 NGMLLNDRK 167
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 3/89 (3%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L D TE+ L + FS G I +R+ + +T+++ G+A++ F+ A+RA+ + Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 328 KNXMVRGKQCGVAPSRDNDTL---FVGNI 405 +++GK + S+ + +L VGNI Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI 101 Score = 45.1 bits (105), Expect = 7e-05 Identities = 26/73 (35%), Positives = 41/73 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++V LD + LRK FS G IT ++MM ++KGF F+ F + E+A +AV+++ Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 328 KNXMVRGKQCGVA 366 +V K VA Sbjct: 354 NGRIVATKPLYVA 366 Score = 44.7 bits (104), Expect = 9e-05 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Frame = +1 Query: 130 KRKEF-EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQA 306 + KEF V++ +D + L+ +F + G V++M + + K+KGF F+ FE E A Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDA 244 Query: 307 KRAVSDLKNXMVRGKQ 354 ++AV ++ + GKQ Sbjct: 245 QKAVDEMNGKELNGKQ 260 Score = 38.5 bits (88), Expect = 0.006 Identities = 19/69 (27%), Positives = 35/69 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ LDK L FS G I +++ + +KG+ F+ FET E A+RA+ + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 328 KNXMVRGKQ 354 ++ ++ Sbjct: 159 NGMLLNDRK 167
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 3/89 (3%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L D TE+ L + FS G I +R+ + +T+++ G+A++ F+ A+RA+ + Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 328 KNXMVRGKQCGVAPSRDNDTL---FVGNI 405 +++GK + S+ + +L VGNI Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI 101 Score = 45.1 bits (105), Expect = 7e-05 Identities = 26/73 (35%), Positives = 41/73 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++V LD + LRK FS G IT ++MM ++KGF F+ F + E+A +AV+++ Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 328 KNXMVRGKQCGVA 366 +V K VA Sbjct: 354 NGRIVATKPLYVA 366 Score = 44.7 bits (104), Expect = 9e-05 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Frame = +1 Query: 130 KRKEF-EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQA 306 + KEF V++ +D + L+ +F + G V++M + + K+KGF F+ FE E A Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDA 244 Query: 307 KRAVSDLKNXMVRGKQ 354 ++AV ++ + GKQ Sbjct: 245 QKAVDEMNGKELNGKQ 260 Score = 38.5 bits (88), Expect = 0.006 Identities = 19/69 (27%), Positives = 35/69 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ LDK L FS G I +++ + +KG+ F+ FET E A+RA+ + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 328 KNXMVRGKQ 354 ++ ++ Sbjct: 159 NGMLLNDRK 167
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 50.4 bits (119), Expect = 2e-06 Identities = 21/59 (35%), Positives = 39/59 (66%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++F+GGL + T+ LR F + G +T+ +M +P TK+++GF F+ + TVE+ A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72 Score = 46.2 bits (108), Expect = 3e-05 Identities = 24/73 (32%), Positives = 39/73 (53%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGG+ +D E LR F + G+I + +M + + K +GFAF+ F+ + + V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 325 LKNXMVRGKQCGV 363 K V G C V Sbjct: 165 -KYHTVNGHNCEV 176
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 50.4 bits (119), Expect = 2e-06 Identities = 21/59 (35%), Positives = 39/59 (66%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++F+GGL + T+ LR F + G +T+ +M +P TK+++GF F+ + TVE+ A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72 Score = 46.2 bits (108), Expect = 3e-05 Identities = 24/73 (32%), Positives = 39/73 (53%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGG+ +D E LR F + G+I + +M + + K +GFAF+ F+ + + V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 325 LKNXMVRGKQCGV 363 K V G C V Sbjct: 165 -KYHTVNGHNCEV 176
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 50.4 bits (119), Expect = 2e-06 Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 V++G + D TE + + S VG + +++M +P T ++KG+AF+ F +E + AV +L Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 328 KNXMV--RGKQCGVAPSRD 378 + R +CG + + D Sbjct: 80 NGYQLGSRFLKCGYSSNSD 98
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 3/89 (3%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L D TE+ L + FS G I +R+ + +T+++ G+A++ F+ A+RA+ + Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 328 KNXMVRGKQCGVAPSRDNDTL---FVGNI 405 +++GK + S+ + +L VGNI Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI 101 Score = 44.3 bits (103), Expect = 1e-04 Identities = 25/73 (34%), Positives = 41/73 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++V LD + LRK F+ G IT ++MM ++KGF F+ F + E+A +AV+++ Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 328 KNXMVRGKQCGVA 366 +V K VA Sbjct: 354 NGRIVATKPLYVA 366 Score = 38.5 bits (88), Expect = 0.006 Identities = 19/69 (27%), Positives = 35/69 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ LDK L FS G I +++ + +KG+ F+ FET E A+RA+ + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158 Query: 328 KNXMVRGKQ 354 ++ ++ Sbjct: 159 NGMLLNDRK 167
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/68 (36%), Positives = 38/68 (55%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFVG + +ATE L+ +FSEVG + RL+ + T K KG+ F ++ E A A+ +L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 328 KNXMVRGK 351 G+ Sbjct: 78 NGREFSGR 85
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/68 (36%), Positives = 38/68 (55%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFVG + +ATE L+ +FSEVG + RL+ + T K KG+ F ++ E A A+ +L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 328 KNXMVRGK 351 G+ Sbjct: 78 NGREFSGR 85
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/68 (36%), Positives = 38/68 (55%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFVG + +ATE L+ +FSEVG + RL+ + T K KG+ F ++ E A A+ +L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 328 KNXMVRGK 351 G+ Sbjct: 78 NGREFSGR 85
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 50.4 bits (119), Expect = 2e-06 Identities = 23/68 (33%), Positives = 40/68 (58%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L T S L ++F+E G + V ++ + VT +++GFAF+ +VE+AK A+ Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175 Query: 328 KNXMVRGK 351 V G+ Sbjct: 176 DGSQVGGR 183
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 50.1 bits (118), Expect = 2e-06 Identities = 24/75 (32%), Positives = 45/75 (60%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ + DATE D +++FS GE+ EV + ++ T ++KGFA++ F+ E A A +L Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362 Query: 328 KNXMVRGKQCGVAPS 372 + +G+ + P+ Sbjct: 363 DKQIFQGRLLHILPA 377 Score = 30.0 bits (66), Expect = 2.3 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 5/86 (5%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNK-----GFAFLRFETVEQAKR 312 +FV L+ T + L + F ++ P K + GF F+ F T EQA Sbjct: 614 IFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGA 673 Query: 313 AVSDLKNXMVRGKQCGVAPSRDNDTL 390 ++ + ++ G + + S +L Sbjct: 674 VIAAMDGAVIDGHKIQLKISHKQSSL 699
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 50.1 bits (118), Expect = 2e-06 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVF-SEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 EF +FVG L ATE+DL +F + + VR+M +P+T ++ F F+RF ++ +RA Sbjct: 191 EFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRA 250 Query: 316 VSDLKNXMVRGKQCGVA 366 + ++ +G+ VA Sbjct: 251 LIEMSGKWFQGRALRVA 267 Score = 37.0 bits (84), Expect = 0.019 Identities = 23/67 (34%), Positives = 32/67 (47%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFVGGL TE LR +F G I VR+ K F++FE A+ ++ L Sbjct: 362 VFVGGLVPKTTEFQLRSLFKPFGPILNVRI------PNGKNCGFVKFEKRIDAEASIQGL 415 Query: 328 KNXMVRG 348 + +V G Sbjct: 416 QGFIVGG 422
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 50.1 bits (118), Expect = 2e-06 Identities = 23/81 (28%), Positives = 42/81 (51%) Frame = +1 Query: 112 MVKAHXKRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFE 291 +V + F VFVG L + T D++ F+ G I++ R++ + T K+KG+ F+ F Sbjct: 96 VVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF 155 Query: 292 TVEQAKRAVSDLKNXMVRGKQ 354 A+ A+ + + G+Q Sbjct: 156 NKWDAENAIQQMGGQWLGGRQ 176 Score = 42.7 bits (99), Expect = 3e-04 Identities = 21/67 (31%), Positives = 36/67 (53%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 V+ GG+ TE +R+ FS G+I E+R+ +KG++F+RF + E A A+ + Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFSSHESAAHAIVSV 269 Query: 328 KNXMVRG 348 + G Sbjct: 270 NGTTIEG 276 Score = 38.9 bits (89), Expect = 0.005 Identities = 19/72 (26%), Positives = 39/72 (54%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L +D TE+ + ++FS++G +++M+ T N + F+ F A A++ + Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 328 KNXMVRGKQCGV 363 + GK+ V Sbjct: 67 NGRKIMGKEVKV 78
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 50.1 bits (118), Expect = 2e-06 Identities = 25/89 (28%), Positives = 52/89 (58%), Gaps = 3/89 (3%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L D TE+ L + FS G + +R+ + +T+++ G+A++ F+ A+RA+ + Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 328 KNXMVRGKQCGVAPSRDNDTL---FVGNI 405 +++GK + S+ + +L VGN+ Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNV 101 Score = 48.5 bits (114), Expect = 6e-06 Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = +1 Query: 130 KRKEF-EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQA 306 K KEF V++ ++ + L+++FS+ G+ V++M +P K+KGF F+ +E E A Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDA 244 Query: 307 KRAVSDLKNXMVRGK 351 +AV ++ + GK Sbjct: 245 NKAVEEMNGKEISGK 259 Score = 45.1 bits (105), Expect = 7e-05 Identities = 24/73 (32%), Positives = 41/73 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +++ LD + LRK FS G IT ++M+ ++KGF F+ F + E+A +AV+++ Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 328 KNXMVRGKQCGVA 366 +V K VA Sbjct: 354 NGRIVGSKPLYVA 366 Score = 38.5 bits (88), Expect = 0.006 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VF+ LDK L FS G I +++ + +KG+AF+ FET E A +A+ + Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158 Query: 328 KNXMVRGKQ 354 ++ ++ Sbjct: 159 NGMLLNDRK 167
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 50.1 bits (118), Expect = 2e-06 Identities = 20/59 (33%), Positives = 40/59 (67%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++F+GGL + T+ LR+ F + G++T+ +M +P TK+++GF F+ + VE+ ++S Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86 Score = 41.2 bits (95), Expect = 0.001 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 ++FVGG+ +D E LR F G+I + +M + + K +GFAF+ F+ + + V Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 50.1 bits (118), Expect = 2e-06 Identities = 20/59 (33%), Positives = 40/59 (67%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++F+GGL + T+ LR+ F + G++T+ +M +P TK+++GF F+ + VE+ ++S Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/73 (30%), Positives = 37/73 (50%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGG+ +D E LR G+I + +M + + K +GFAF+ F+ + + V Sbjct: 119 KIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178 Query: 325 LKNXMVRGKQCGV 363 K + G C V Sbjct: 179 -KYHTINGHNCEV 190
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 50.1 bits (118), Expect = 2e-06 Identities = 21/59 (35%), Positives = 39/59 (66%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++F+GGL + T+ LR F + G +T+ +M +P TK+++GF F+ + TVE+ A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 72 Score = 45.4 bits (106), Expect = 5e-05 Identities = 24/73 (32%), Positives = 38/73 (52%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGG+ +D E LR F + G+I + +M + + K +GFAF+ F+ + V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ 164 Query: 325 LKNXMVRGKQCGV 363 K V G C V Sbjct: 165 -KYHTVNGHNCEV 176
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 50.1 bits (118), Expect = 2e-06 Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 3/89 (3%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L +D TE+ L + FS G I +R+ + +T+++ G+A++ F+ A+RA+ + Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 328 KNXMVRGKQCGVAPSRDNDTL---FVGNI 405 +++G+ + S+ + +L VGNI Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNI 101 Score = 42.7 bits (99), Expect = 3e-04 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++V LD + LRK F G IT ++MM ++KGF F+ F + E+A +AV+++ Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 328 KNXMVRGKQCGVA 366 +V K VA Sbjct: 354 NGRIVATKPLYVA 366 Score = 42.4 bits (98), Expect = 4e-04 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Frame = +1 Query: 130 KRKEF-EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQA 306 + KEF V++ D + L+++F + G V++M + K+KGF F+ FE E A Sbjct: 186 RAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDA 244 Query: 307 KRAVSDLKNXMVRGK 351 ++AV ++ + GK Sbjct: 245 QKAVDEMNGKDMNGK 259 Score = 38.5 bits (88), Expect = 0.006 Identities = 19/69 (27%), Positives = 35/69 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ LDK L FS G I +++ + +KG+ F+ FET E A+RA+ + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158 Query: 328 KNXMVRGKQ 354 ++ ++ Sbjct: 159 NGMLLNDRK 167
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 50.1 bits (118), Expect = 2e-06 Identities = 23/75 (30%), Positives = 43/75 (57%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ + +A+E D R +FS+ G + EV + ++ T K+KGF +++F E A RA L Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSL 371 Query: 328 KNXMVRGKQCGVAPS 372 + +G+ + P+ Sbjct: 372 DKQIFQGRLLHILPA 386 Score = 42.4 bits (98), Expect = 4e-04 Identities = 23/57 (40%), Positives = 37/57 (64%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 + V GL K TE LR+ FS+ G++T+V+LM + K FAF+ +++ + A+RAV Sbjct: 4 LIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRK-FAFIGYKSADAAERAV 59 Score = 29.3 bits (64), Expect = 3.9 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 5/85 (5%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKN-----KGFAFLRFETVEQAKR 312 VFV L+ T L +F + + P K + GF F+ F T EQA Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANV 678 Query: 313 AVSDLKNXMVRGKQCGVAPSRDNDT 387 A+S L ++ G + + S T Sbjct: 679 AISTLDGHVLDGHKLQLKLSHKQGT 703
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 50.1 bits (118), Expect = 2e-06 Identities = 22/73 (30%), Positives = 43/73 (58%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGG+ ++ E+DLR F + G + ++++ T+K +GFAF+ F+ + + + Sbjct: 109 KLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDK-ICL 167 Query: 325 LKNXMVRGKQCGV 363 +N +RGK V Sbjct: 168 SRNHQIRGKHIDV 180 Score = 47.8 bits (112), Expect = 1e-05 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 3/60 (5%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFL---RFETVEQAKRA 315 ++F+GGLD T+ L++ F + GEI +V +M +P TK+++GF F+ R V+ A+ A Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 50.1 bits (118), Expect = 2e-06 Identities = 22/71 (30%), Positives = 42/71 (59%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 K+ ++V L + T+ +L K+F + G I + ++ + +T + +G AF+RF E+A+ A Sbjct: 186 KDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEA 245 Query: 316 VSDLKNXMVRG 348 +S L N + G Sbjct: 246 ISALNNVIPEG 256 Score = 39.7 bits (91), Expect = 0.003 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 + V L +D T+ +L +F G I R+M + T + G+AF+ F + A+ A+ + Sbjct: 104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTV 163 Query: 328 KNXMVRGKQCGVAPSR------DNDTLFVGNICKTWT 420 VR K+ V+ +R + L+V N+ +T T Sbjct: 164 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTIT 200
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 49.7 bits (117), Expect = 3e-06 Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 6/98 (6%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 + V L ++ T+ +LR +FS +GE+ +L+ + V + G+ F+ + T + A+RA+S L Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81 Query: 328 KNXMVRGKQCGVAPSRDND------TLFVGNICKTWTK 423 ++ K V+ +R + L++ + +T T+ Sbjct: 82 NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119 Score = 45.1 bits (105), Expect = 7e-05 Identities = 18/62 (29%), Positives = 38/62 (61%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 K+ +++ GL + T+ D+ +FS G I R++++ T ++G AF+RF+ +A+ A Sbjct: 104 KDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 163 Query: 316 VS 321 ++ Sbjct: 164 IT 165 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/68 (29%), Positives = 36/68 (52%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ L +DA E L ++F G +T V+++ + T K KGF F+ E++ A++ L Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305 Query: 328 KNXMVRGK 351 + K Sbjct: 306 NGYRLGDK 313
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 49.7 bits (117), Expect = 3e-06 Identities = 23/81 (28%), Positives = 41/81 (50%) Frame = +1 Query: 112 MVKAHXKRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFE 291 +V + F VFVG L T D++ F+ G I++ R++ + T K+KG+ F+ F Sbjct: 96 VVSTQRSQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF 155 Query: 292 TVEQAKRAVSDLKNXMVRGKQ 354 A+ A+ + + G+Q Sbjct: 156 NKWDAENAIQQMGGQWLGGRQ 176 Score = 42.7 bits (99), Expect = 3e-04 Identities = 21/67 (31%), Positives = 36/67 (53%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 V+ GG+ TE +R+ FS G+I E+R+ +KG++F+RF + E A A+ + Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSHESAAHAIVSV 269 Query: 328 KNXMVRG 348 + G Sbjct: 270 NGTTIEG 276 Score = 38.9 bits (89), Expect = 0.005 Identities = 19/72 (26%), Positives = 39/72 (54%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L +D TE+ + ++FS++G +++M+ T N + F+ F A A++ + Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 328 KNXMVRGKQCGV 363 + GK+ V Sbjct: 67 NGRKIMGKEVKV 78
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 49.7 bits (117), Expect = 3e-06 Identities = 24/68 (35%), Positives = 39/68 (57%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L + TE LR +F G I ++LMM+ T ++KG+ F+ F E AK+A+ L Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 328 KNXMVRGK 351 + G+ Sbjct: 312 NGFELAGR 319
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 49.7 bits (117), Expect = 3e-06 Identities = 24/68 (35%), Positives = 39/68 (57%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L + TE LR +F G I ++LMM+ T ++KG+ F+ F E AK+A+ L Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 328 KNXMVRGK 351 + G+ Sbjct: 312 NGFELAGR 319
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 49.7 bits (117), Expect = 3e-06 Identities = 21/68 (30%), Positives = 42/68 (61%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VGGL ++ + L F G+IT++++ ++ T+K++GFAF+ FE E A A+ ++ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 328 KNXMVRGK 351 + G+ Sbjct: 68 NESELFGR 75
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 49.7 bits (117), Expect = 3e-06 Identities = 21/68 (30%), Positives = 42/68 (61%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VGGL ++ + L F G+IT++++ ++ T+K++GFAF+ FE E A A+ ++ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 328 KNXMVRGK 351 + G+ Sbjct: 68 NESELFGR 75
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 49.3 bits (116), Expect = 4e-06 Identities = 20/78 (25%), Positives = 44/78 (56%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++F+GGL ++ LR F+ G++ + +++++ T +++GF F+ F A A+S+ Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 325 LKNXMVRGKQCGVAPSRD 378 + + G+ V P+ D Sbjct: 96 MDGKELNGRHIRVNPAND 113
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 49.3 bits (116), Expect = 4e-06 Identities = 19/59 (32%), Positives = 38/59 (64%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++F+GGL + TE LR + + G++T+ +M +P +K+++GF F+ F + + A+S Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68 Score = 40.8 bits (94), Expect = 0.001 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 ++FVGG+ +D E LR+ F E G+I ++ + + K +GF F+ F + + V Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 49.3 bits (116), Expect = 4e-06 Identities = 28/81 (34%), Positives = 43/81 (53%) Frame = +1 Query: 133 RKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKR 312 RK +F+ L A E D R++FS+ GE+ EV L +N T + KGFA ++FE E A Sbjct: 298 RKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIA 357 Query: 313 AVSDLKNXMVRGKQCGVAPSR 375 A + +G+ + P + Sbjct: 358 AYEAQDGKIFQGRLLHILPGK 378
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 49.3 bits (116), Expect = 4e-06 Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 3/89 (3%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L +D ES L FS G + +R+ + +T+++ G+A++ F+ A+RA+ + Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63 Query: 328 KNXMVRGKQCGVAPSRDNDTL---FVGNI 405 +VR K + S+ + +L VGN+ Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVGNV 92 Score = 41.6 bits (96), Expect = 8e-04 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 V+V +D + L++ F G+IT ++M K+KGF F+ FET E A+ AV L Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKE-DGKSKGFGFVAFETTEAAEAAVQAL 243 Query: 328 K-NXMVRGKQCGVA 366 M GK VA Sbjct: 244 NGKDMGEGKSLYVA 257 Score = 40.0 bits (92), Expect = 0.002 Identities = 26/83 (31%), Positives = 39/83 (46%) Frame = +1 Query: 118 KAHXKRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETV 297 K H ++V LD + LR FS G IT ++M + ++KGF F+ F Sbjct: 279 KRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAA 337 Query: 298 EQAKRAVSDLKNXMVRGKQCGVA 366 +A AV++L +V K VA Sbjct: 338 SEATCAVTELNGRVVGSKPLYVA 360 Score = 35.0 bits (79), Expect = 0.072 Identities = 18/69 (26%), Positives = 33/69 (47%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VF+ LD+ + FS G I ++ + +KG+ F+ FET E A ++ + Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKV 150 Query: 328 KNXMVRGKQ 354 ++ GK+ Sbjct: 151 NGMLLNGKK 159
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 49.3 bits (116), Expect = 4e-06 Identities = 20/68 (29%), Positives = 42/68 (61%) Frame = +1 Query: 118 KAHXKRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETV 297 K K + ++F+GGL + TE LR + + G++T+ +M +P +K+++GF F+ F ++ Sbjct: 13 KKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 72 Query: 298 EQAKRAVS 321 + A++ Sbjct: 73 AEVDAAMA 80 Score = 41.2 bits (95), Expect = 0.001 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 ++FVGG+ +D E LR F E G+I + ++ + + K +GF F+ F+ + + V Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 48.9 bits (115), Expect = 5e-06 Identities = 26/85 (30%), Positives = 46/85 (54%) Frame = +1 Query: 133 RKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKR 312 R +FV L DA+ESDL VFS+ G+I E+ + + + +KGFA++++ + A + Sbjct: 298 RLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQ 357 Query: 313 AVSDLKNXMVRGKQCGVAPSRDNDT 387 A +L +G+ + P+ T Sbjct: 358 AYKELDGKHFQGRLMHILPATAKKT 382 Score = 38.1 bits (87), Expect = 0.008 Identities = 19/70 (27%), Positives = 37/70 (52%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++ + L AT+ D+R +F G++ VR+ + +GF F F + +A+ A+ Sbjct: 703 KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKK-FDRSARGFGFADFVSAREAENAMDA 761 Query: 325 LKNXMVRGKQ 354 LKN + G++ Sbjct: 762 LKNTHLLGRR 771
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 48.9 bits (115), Expect = 5e-06 Identities = 21/60 (35%), Positives = 40/60 (66%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+G L D E +L+K F + GEI ++R++ + +T+K+KG+AF+ F+ +K A ++ Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEI 168
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 48.9 bits (115), Expect = 5e-06 Identities = 30/77 (38%), Positives = 41/77 (53%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 K ++V ++ TE +LRK FS+ G IT +LM + K+KGF F+ F T E+A A Sbjct: 302 KVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDA 360 Query: 316 VSDLKNXMVRGKQCGVA 366 V M GK VA Sbjct: 361 VKTFHGQMFHGKPLYVA 377 Score = 35.4 bits (80), Expect = 0.055 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L TE L F+E +T VRL + + ++ + + F + + A A+ Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85 Query: 328 KNXMVRGKQCGV 363 N ++ GK V Sbjct: 86 NNSLLNGKMIRV 97
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 48.5 bits (114), Expect = 6e-06 Identities = 20/58 (34%), Positives = 38/58 (65%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 ++F+GGL + T+ LR+ F + G +T+ +M +P TK+++GF F+ + VE+ A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93 Score = 45.4 bits (106), Expect = 5e-05 Identities = 23/73 (31%), Positives = 40/73 (54%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGG+ +D E +LR F + G+I + +M + + K +GFAF+ F+ + + V Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 325 LKNXMVRGKQCGV 363 K + G C V Sbjct: 187 -KYHTINGHNCEV 198
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 48.5 bits (114), Expect = 6e-06 Identities = 22/71 (30%), Positives = 40/71 (56%) Frame = +1 Query: 142 FEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 F VFVG L + T D++ F+ G+I++ R++ + T K+KG+ F+ F A+ A+ Sbjct: 97 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 156 Query: 322 DLKNXMVRGKQ 354 + + G+Q Sbjct: 157 HMGGQWLGGRQ 167 Score = 43.5 bits (101), Expect = 2e-04 Identities = 22/71 (30%), Positives = 36/71 (50%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 K V+ GG+ T+ +R+ FS G+I E+R+ KG++F+RF T E A A Sbjct: 203 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 256 Query: 316 VSDLKNXMVRG 348 + + + G Sbjct: 257 IVSVNGTTIEG 267 Score = 33.1 bits (74), Expect = 0.27 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 10/96 (10%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L +D TE + ++FS++G +++ + N + F+ F A A++ + Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAM 68 Query: 328 KNXMVRGKQCGV-----APSRDNDT-----LFVGNI 405 + GK+ V S+ DT +FVG++ Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDL 104
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 48.5 bits (114), Expect = 6e-06 Identities = 22/71 (30%), Positives = 40/71 (56%) Frame = +1 Query: 142 FEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 F VFVG L + T D++ F+ G+I++ R++ + T K+KG+ F+ F A+ A+ Sbjct: 114 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173 Query: 322 DLKNXMVRGKQ 354 + + G+Q Sbjct: 174 HMGGQWLGGRQ 184 Score = 43.5 bits (101), Expect = 2e-04 Identities = 22/71 (30%), Positives = 36/71 (50%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 K V+ GG+ T+ +R+ FS G+I E+R+ KG++F+RF T E A A Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 273 Query: 316 VSDLKNXMVRG 348 + + + G Sbjct: 274 IVSVNGTTIEG 284
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 48.5 bits (114), Expect = 6e-06 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPV-----TKKNKGFAFLRFET 294 K K +V V L +AT+ D+R++FS G++ +RL V + +GFAFL F T Sbjct: 636 KTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTT 695 Query: 295 VEQAKRAVSDLKNXMVRGK 351 +A RA+ LK+ + G+ Sbjct: 696 HTEAARAMEALKHTHLLGR 714 Score = 38.5 bits (88), Expect = 0.006 Identities = 25/76 (32%), Positives = 33/76 (43%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV L T L FS G I E L ++ T + G AFL+F E A A L Sbjct: 223 LFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYKAL 282 Query: 328 KNXMVRGKQCGVAPSR 375 + +G+ V P R Sbjct: 283 DKTIFQGRLLHVLPGR 298
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 48.5 bits (114), Expect = 6e-06 Identities = 22/57 (38%), Positives = 36/57 (63%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 VFVG LD + E L + FS G++ VR++ +P T KGFA+++F+ V ++A+ Sbjct: 276 VFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQAL 332
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 48.5 bits (114), Expect = 6e-06 Identities = 21/56 (37%), Positives = 32/56 (57%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKR 312 ++FVGGL D E +R+ F GE+ + L M+ T K +GF F+ F+ E K+ Sbjct: 35 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 90
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 48.5 bits (114), Expect = 6e-06 Identities = 19/48 (39%), Positives = 33/48 (68%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRF 288 ++F+GGL T+ LR+ F + GE+ E +M +P+TK+++GF F+ F Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68 Score = 47.0 bits (110), Expect = 2e-05 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 4/74 (5%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS- 321 ++FVGGL + T D++ F + G++ + LM + T +++GF F+ FE+ + ++ Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169 Query: 322 ---DLKNXMVRGKQ 354 ++ N MV K+ Sbjct: 170 HFHEINNKMVECKK 183
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 48.5 bits (114), Expect = 6e-06 Identities = 19/48 (39%), Positives = 33/48 (68%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRF 288 ++F+GGL T+ LR+ F + GE+ E +M +P+TK+++GF F+ F Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68 Score = 47.0 bits (110), Expect = 2e-05 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 4/74 (5%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS- 321 ++FVGGL + T D++ F + G++ + LM + T +++GF F+ FE+ + ++ Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169 Query: 322 ---DLKNXMVRGKQ 354 ++ N MV K+ Sbjct: 170 HFHEINNKMVECKK 183
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 48.5 bits (114), Expect = 6e-06 Identities = 19/48 (39%), Positives = 33/48 (68%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRF 288 ++F+GGL T+ LR+ F + GE+ E +M +P+TK+++GF F+ F Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68 Score = 47.8 bits (112), Expect = 1e-05 Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS- 321 ++FVGGL + T D+++ F + G++ + LM + T +++GF F+ FE+ + ++ Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169 Query: 322 ---DLKNXMVRGKQ 354 ++ N MV K+ Sbjct: 170 HFHEINNKMVECKK 183
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 48.5 bits (114), Expect = 6e-06 Identities = 20/58 (34%), Positives = 38/58 (65%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 ++F+GGL + T+ LR+ F + G +T+ +M +P TK+++GF F+ + VE+ A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93 Score = 45.4 bits (106), Expect = 5e-05 Identities = 23/73 (31%), Positives = 40/73 (54%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGG+ +D E +LR F + G+I + +M + + K +GFAF+ F+ + + V Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 325 LKNXMVRGKQCGV 363 K + G C V Sbjct: 187 -KYHTINGHNCEV 198
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 48.5 bits (114), Expect = 6e-06 Identities = 20/58 (34%), Positives = 38/58 (65%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 ++F+GGL + T+ LR+ F + G +T+ +M +P TK+++GF F+ + VE+ A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93 Score = 45.4 bits (106), Expect = 5e-05 Identities = 23/73 (31%), Positives = 40/73 (54%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGG+ +D E +LR F + G+I + +M + + K +GFAF+ F+ + + V Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 325 LKNXMVRGKQCGV 363 K + G C V Sbjct: 187 -KYHTINGHNCEV 198
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 48.5 bits (114), Expect = 6e-06 Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 6/98 (6%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 + V L ++ T+ +LR +FS +GE+ +L+ + V + G+ F+ + T + A+RA++ L Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 Query: 328 KNXMVRGKQCGVAPSRDND------TLFVGNICKTWTK 423 ++ K V+ +R + L++ + +T T+ Sbjct: 82 NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119 Score = 45.1 bits (105), Expect = 7e-05 Identities = 18/62 (29%), Positives = 38/62 (61%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 K+ +++ GL + T+ D+ +FS G I R++++ T ++G AF+RF+ +A+ A Sbjct: 104 KDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 163 Query: 316 VS 321 ++ Sbjct: 164 IT 165 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ L +DA E L ++F G +T V+++ + T K KGF F+ E+A A++ L Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305 Query: 328 KNXMVRGK 351 + K Sbjct: 306 NGYRLGDK 313
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 48.1 bits (113), Expect = 8e-06 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +++G + + E LR+ FS+ G +T +RL + T +KG+A++ FE E AK + Sbjct: 43 IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADTM 102 Query: 328 KNXMV--RGKQCG-VAPSRDNDTLFVGNICK 411 N + R +C V P + + LF+G K Sbjct: 103 NNYLFCERLLKCEFVPPEKVHPRLFIGCTAK 133
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 48.1 bits (113), Expect = 8e-06 Identities = 18/59 (30%), Positives = 39/59 (66%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++F+GGL + TE LR + + G++T+ +M +P +K+++GF F+ F ++ + A++ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68 Score = 41.2 bits (95), Expect = 0.001 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 ++FVGG+ +D E LR F E G+I + ++ + + K +GF F+ F+ + + V Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 48.1 bits (113), Expect = 8e-06 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGGL + TE +LR F + GEI + + +P T +++GFAF+ F E + VS Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK-VSA 115 Query: 325 LKNXMVRGKQCGVAPSR-DNDTLFVGNI 405 ++ K+ ++ + +FVG + Sbjct: 116 ADEHIINSKKVDPKKAKARHGKIFVGGL 143 Score = 43.1 bits (100), Expect = 3e-04 Identities = 21/78 (26%), Positives = 40/78 (51%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAK 309 K + ++FVGGL + ++ +++ F + G I EV + + + KGF F+ F++ EQ Sbjct: 132 KARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDS-EQVV 190 Query: 310 RAVSDLKNXMVRGKQCGV 363 + + GK+ V Sbjct: 191 TDLLKTPKQKIAGKEVDV 208
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 48.1 bits (113), Expect = 8e-06 Identities = 23/79 (29%), Positives = 45/79 (56%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAK 309 K + +++ LD + L+++FSE G +T ++M+NP ++GF F+ + E+A Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEAL 386 Query: 310 RAVSDLKNXMVRGKQCGVA 366 RA+S++ M+ K +A Sbjct: 387 RALSEMNGKMIGRKPLYIA 405 Score = 42.7 bits (99), Expect = 3e-04 Identities = 22/69 (31%), Positives = 37/69 (53%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ LD L + FS G I ++ M+ VT ++KG+ F++FE E A+ A+ L Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196 Query: 328 KNXMVRGKQ 354 ++ KQ Sbjct: 197 NGMLMNDKQ 205
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 48.1 bits (113), Expect = 8e-06 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 2/88 (2%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +++ GL + T+ DL K+ G+I + +++ T K KG+ F+ F++ A++AVS L Sbjct: 64 LYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSAL 123 Query: 328 KNXMVRGKQCGVAPSRDND--TLFVGNI 405 K G Q +A ++ D L++ N+ Sbjct: 124 K---ANGVQAQMAKQQEQDPTNLYISNL 148
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 48.1 bits (113), Expect = 8e-06 Identities = 27/75 (36%), Positives = 38/75 (50%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAK 309 K K V+V L + T+ DL+ F E G+IT ++M K+KGF F+ FE + A Sbjct: 211 KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSA-VVMKDGEGKSKGFGFVNFENADDAA 269 Query: 310 RAVSDLKNXMVRGKQ 354 RAV L K+ Sbjct: 270 RAVESLNGHKFDDKE 284
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 48.1 bits (113), Expect = 8e-06 Identities = 21/59 (35%), Positives = 39/59 (66%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++F+GGL+ +ES LR F G +T+ +++NP TK+++ F F+ + VE+A A++ Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66 Score = 45.4 bits (106), Expect = 5e-05 Identities = 27/93 (29%), Positives = 51/93 (54%) Frame = +1 Query: 121 AHXKRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVE 300 AH K K+ +FVGGL D E DL + FS+ G + + ++ + + K +GF F+ F+ + Sbjct: 93 AHAKVKK--LFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHD 150 Query: 301 QAKRAVSDLKNXMVRGKQCGVAPSRDNDTLFVG 399 A +A + +K ++G + V + + ++ G Sbjct: 151 AADKA-AVVKFHPIQGHRVEVKKAVPKEDIYSG 182
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 48.1 bits (113), Expect = 8e-06 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 19/105 (18%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVG L + L+K F +G + R++ T +++G+ ++ FE A++A+ ++ Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 328 KNXMV-------------------RGKQCGVAPSRDNDTLFVGNI 405 + + R K+ G PS +DTLF+GN+ Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNL 274 Score = 47.4 bits (111), Expect = 1e-05 Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 3/82 (3%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+G L +A + ++F++ GE+ VR+ +P T++ KGF +++F +E AK+A+ L Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328 Query: 328 KNXMVRGKQCGV---APSRDND 384 + + + + +P +ND Sbjct: 329 QGEYIDNRPVRLDFSSPRPNND 350
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.1 bits (113), Expect = 8e-06 Identities = 25/68 (36%), Positives = 41/68 (60%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFV + D + L+++F E G V+++ + + K+KGF F+R+ET E A++AV DL Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 328 KNXMVRGK 351 + GK Sbjct: 260 HGKSIDGK 267 Score = 47.4 bits (111), Expect = 1e-05 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%) Frame = +1 Query: 130 KRKEF---EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVE 300 K+K++ ++VG LD D TE L K F G + R+ +PVT+ G+ ++ F Sbjct: 11 KKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA 70 Query: 301 QAKRAVSDLKNXMVRGKQCGVAPSRDNDTL---FVGNI 405 A+ A++ + ++ GK + S+ +D L VGNI Sbjct: 71 DAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNI 108 Score = 33.5 bits (75), Expect = 0.21 Identities = 17/69 (24%), Positives = 35/69 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ LDK L +FS G I +++ + +KG+A++ F+++ A RA+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHM 165 Query: 328 KNXMVRGKQ 354 + +Q Sbjct: 166 NGVRLNNRQ 174
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.1 bits (113), Expect = 8e-06 Identities = 25/68 (36%), Positives = 41/68 (60%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFV + D + L+++F E G V+++ + + K+KGF F+R+ET E A++AV DL Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 328 KNXMVRGK 351 + GK Sbjct: 260 HGKSIDGK 267 Score = 47.4 bits (111), Expect = 1e-05 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%) Frame = +1 Query: 130 KRKEF---EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVE 300 K+K++ ++VG LD D TE L K F G + R+ +PVT+ G+ ++ F Sbjct: 11 KKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA 70 Query: 301 QAKRAVSDLKNXMVRGKQCGVAPSRDNDTL---FVGNI 405 A+ A++ + ++ GK + S+ +D L VGNI Sbjct: 71 DAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNI 108 Score = 33.5 bits (75), Expect = 0.21 Identities = 17/69 (24%), Positives = 35/69 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ LDK L +FS G I +++ + +KG+A++ F+++ A RA+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHM 165 Query: 328 KNXMVRGKQ 354 + +Q Sbjct: 166 NGVRLNNRQ 174
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.1 bits (113), Expect = 8e-06 Identities = 25/68 (36%), Positives = 41/68 (60%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFV + D + L+++F E G V+++ + + K+KGF F+R+ET E A++AV DL Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 328 KNXMVRGK 351 + GK Sbjct: 260 HGKSIDGK 267 Score = 47.4 bits (111), Expect = 1e-05 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%) Frame = +1 Query: 130 KRKEF---EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVE 300 K+K++ ++VG LD D TE L K F G + R+ +PVT+ G+ ++ F Sbjct: 11 KKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA 70 Query: 301 QAKRAVSDLKNXMVRGKQCGVAPSRDNDTL---FVGNI 405 A+ A++ + ++ GK + S+ +D L VGNI Sbjct: 71 DAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNI 108 Score = 33.5 bits (75), Expect = 0.21 Identities = 17/69 (24%), Positives = 35/69 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ LDK L +FS G I +++ + +KG+A++ F+++ A RA+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHM 165 Query: 328 KNXMVRGKQ 354 + +Q Sbjct: 166 NGVRLNNRQ 174
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.1 bits (113), Expect = 8e-06 Identities = 25/68 (36%), Positives = 41/68 (60%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFV + D + L+++F E G V+++ + + K+KGF F+R+ET E A++AV DL Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 328 KNXMVRGK 351 + GK Sbjct: 260 HGKSIDGK 267 Score = 47.4 bits (111), Expect = 1e-05 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%) Frame = +1 Query: 130 KRKEF---EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVE 300 K+K++ ++VG LD D TE L K F G + R+ +PVT+ G+ ++ F Sbjct: 11 KKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA 70 Query: 301 QAKRAVSDLKNXMVRGKQCGVAPSRDNDTL---FVGNI 405 A+ A++ + ++ GK + S+ +D L VGNI Sbjct: 71 DAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNI 108 Score = 33.5 bits (75), Expect = 0.21 Identities = 17/69 (24%), Positives = 35/69 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ LDK L +FS G I +++ + +KG+A++ F+++ A RA+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHM 165 Query: 328 KNXMVRGKQ 354 + +Q Sbjct: 166 NGVRLNNRQ 174
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.1 bits (113), Expect = 8e-06 Identities = 25/68 (36%), Positives = 41/68 (60%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFV + D + L+++F E G V+++ + + K+KGF F+R+ET E A++AV DL Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 328 KNXMVRGK 351 + GK Sbjct: 260 HGKSIDGK 267 Score = 47.4 bits (111), Expect = 1e-05 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%) Frame = +1 Query: 130 KRKEF---EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVE 300 K+K++ ++VG LD D TE L K F G + R+ +PVT+ G+ ++ F Sbjct: 11 KKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA 70 Query: 301 QAKRAVSDLKNXMVRGKQCGVAPSRDNDTL---FVGNI 405 A+ A++ + ++ GK + S+ +D L VGNI Sbjct: 71 DAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNI 108 Score = 33.5 bits (75), Expect = 0.21 Identities = 17/69 (24%), Positives = 35/69 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ LDK L +FS G I +++ + +KG+A++ F+++ A RA+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHM 165 Query: 328 KNXMVRGKQ 354 + +Q Sbjct: 166 NGVRLNNRQ 174
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.1 bits (113), Expect = 8e-06 Identities = 25/68 (36%), Positives = 41/68 (60%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFV + D + L+++F E G V+++ + + K+KGF F+R+ET E A++AV DL Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 328 KNXMVRGK 351 + GK Sbjct: 260 HGKSIDGK 267 Score = 47.4 bits (111), Expect = 1e-05 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%) Frame = +1 Query: 130 KRKEF---EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVE 300 K+K++ ++VG LD D TE L K F G + R+ +PVT+ G+ ++ F Sbjct: 11 KKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA 70 Query: 301 QAKRAVSDLKNXMVRGKQCGVAPSRDNDTL---FVGNI 405 A+ A++ + ++ GK + S+ +D L VGNI Sbjct: 71 DAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNI 108 Score = 33.5 bits (75), Expect = 0.21 Identities = 17/69 (24%), Positives = 35/69 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ LDK L +FS G I +++ + +KG+A++ F+++ A RA+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHM 165 Query: 328 KNXMVRGKQ 354 + +Q Sbjct: 166 NGVRLNNRQ 174
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 47.8 bits (112), Expect = 1e-05 Identities = 23/61 (37%), Positives = 35/61 (57%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 K+ VFVG LD + E L K F G I VR++ +P T KGFA+++F ++ +A Sbjct: 226 KQRSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKA 285 Query: 316 V 318 + Sbjct: 286 L 286
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 47.8 bits (112), Expect = 1e-05 Identities = 22/60 (36%), Positives = 38/60 (63%) Frame = +1 Query: 142 FEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 F VG L D TE+DL F E +T +RL+++P+T++++GF ++ FET + A++ Sbjct: 94 FTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALA 151
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 47.8 bits (112), Expect = 1e-05 Identities = 22/70 (31%), Positives = 39/70 (55%) Frame = +1 Query: 142 FEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 F V+VG L D L ++FSE G++ E R++ + T +++GF F+ V++ A+S Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303 Query: 322 DLKNXMVRGK 351 L + G+ Sbjct: 304 ALDGQNLEGR 313 Score = 41.2 bits (95), Expect = 0.001 Identities = 19/72 (26%), Positives = 37/72 (51%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 +E ++FVG L D L +F + G + ++ N T +++GF F+ +V++A+ A Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207 Query: 316 VSDLKNXMVRGK 351 V + G+ Sbjct: 208 VEKFNRYDLNGR 219
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 47.8 bits (112), Expect = 1e-05 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFVG + D +E + ++F++VG + +L+++P T KG+ F F E AV L Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 328 KNXMVRGKQCGVA-PSRD 378 N + ++ V PS D Sbjct: 69 NNSELGPRKIRVEFPSND 86
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 47.4 bits (111), Expect = 1e-05 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA--VS 321 VFVG LD + +E L K F G I VR++ +P T KGFA+++F + +A ++ Sbjct: 261 VFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNKALLLN 320 Query: 322 DLKNXMVRGKQCGVAPSRD 378 D K + +G++ V R+ Sbjct: 321 DKKMAVGKGRKLRVTRCRN 339
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 47.4 bits (111), Expect = 1e-05 Identities = 19/49 (38%), Positives = 33/49 (67%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFE 291 ++FVGGLD T+ LR FS+ GE+ + +M + T +++GF F++F+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59 Score = 46.6 bits (109), Expect = 2e-05 Identities = 24/84 (28%), Positives = 48/84 (57%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 K ++FVGG+ + E++LR+ F + G +TEV ++ + ++ +GF F+ FE + +A Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170 Query: 316 VSDLKNXMVRGKQCGVAPSRDNDT 387 V ++ + GK+ V + D+ Sbjct: 171 V-NMHFHDIMGKKVEVKRAEPRDS 193
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 47.4 bits (111), Expect = 1e-05 Identities = 19/49 (38%), Positives = 33/49 (67%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFE 291 ++FVGGLD T+ LR FS+ GE+ + +M + T +++GF F++F+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59 Score = 44.7 bits (104), Expect = 9e-05 Identities = 22/81 (27%), Positives = 47/81 (58%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGG+ + E++L++ F+ G +TEV ++ + ++ +GF F+ FE + +AV + Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 173 Query: 325 LKNXMVRGKQCGVAPSRDNDT 387 + + GK+ V + D+ Sbjct: 174 MHFHDIMGKKVEVKRAEPRDS 194
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 47.4 bits (111), Expect = 1e-05 Identities = 19/49 (38%), Positives = 33/49 (67%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFE 291 ++FVGGLD T+ LR FS+ GE+ + +M + T +++GF F++F+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59 Score = 46.6 bits (109), Expect = 2e-05 Identities = 24/84 (28%), Positives = 48/84 (57%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 K ++FVGG+ + E++LR+ F + G +TEV ++ + ++ +GF F+ FE + +A Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170 Query: 316 VSDLKNXMVRGKQCGVAPSRDNDT 387 V ++ + GK+ V + D+ Sbjct: 171 V-NMHFHDIMGKKVEVKRAEPRDS 193
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 47.4 bits (111), Expect = 1e-05 Identities = 27/90 (30%), Positives = 44/90 (48%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 K +F+G L TE LRK+F ++ + +TKK+ G+ +L F+ A+ A Sbjct: 109 KTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESA 168 Query: 316 VSDLKNXMVRGKQCGVAPSRDNDTLFVGNI 405 + + G++ + PS N TLF NI Sbjct: 169 RKEFNYTVFFGQEVKIMPSMKN-TLFRKNI 197
>DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 353 Score = 47.4 bits (111), Expect = 1e-05 Identities = 26/67 (38%), Positives = 39/67 (58%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 EVF+G L +D E L +F VG + E RLMM + N+GFA+ R+ + A+ A++ Sbjct: 59 EVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQAAIAT 117 Query: 325 LKNXMVR 345 L N +R Sbjct: 118 LHNHPLR 124
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 47.0 bits (110), Expect = 2e-05 Identities = 23/72 (31%), Positives = 41/72 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV G+ ++ATE D+ F+E GEI + L ++ T KG+ + +ET ++A+ A+ L Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134 Query: 328 KNXMVRGKQCGV 363 + G+ V Sbjct: 135 NGQDLMGQPISV 146
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 47.0 bits (110), Expect = 2e-05 Identities = 23/72 (31%), Positives = 41/72 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV G+ ++ATE D+ F+E GEI + L ++ T KG+ + +ET ++A+ A+ L Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134 Query: 328 KNXMVRGKQCGV 363 + G+ V Sbjct: 135 NGQDLMGQPISV 146
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 47.0 bits (110), Expect = 2e-05 Identities = 24/70 (34%), Positives = 41/70 (58%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKN 333 V GL TE DLR+VFS G ++ V ++ + T +++GFAF+ FE ++ +K A+ Sbjct: 121 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 180 Query: 334 XMVRGKQCGV 363 + G++ V Sbjct: 181 MELDGRRIRV 190
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 47.0 bits (110), Expect = 2e-05 Identities = 25/86 (29%), Positives = 46/86 (53%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +++ GL T+ DL K+ G+I + +++ T K KG+ F+ F++ A++AVS L Sbjct: 64 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123 Query: 328 KNXMVRGKQCGVAPSRDNDTLFVGNI 405 K V+ Q +D L++ N+ Sbjct: 124 KASGVQA-QMAKQQEQDPTNLYISNL 148
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 47.0 bits (110), Expect = 2e-05 Identities = 18/59 (30%), Positives = 37/59 (62%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++F+GGL + TE LR + + G +T+ +M +P +K+++GF F+ F + + A++ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68 Score = 44.3 bits (103), Expect = 1e-04 Identities = 19/58 (32%), Positives = 35/58 (60%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 ++FVGG+ +D E LR+ F E G+I + ++ + + K +GFAF+ F+ + + V Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 47.0 bits (110), Expect = 2e-05 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 +E ++FVGGL+ + E L FS G I+EV ++ + T++++GF F+ F E A A Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63 Query: 316 VSDLKNXMVRGKQCGV 363 + + + G+Q V Sbjct: 64 MRAMNGESLDGRQIRV 79
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 47.0 bits (110), Expect = 2e-05 Identities = 20/48 (41%), Positives = 31/48 (64%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRF 288 ++F+GGL + LR FS+ GEI E +M +P TK+++GF F+ F Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69 Score = 46.2 bits (108), Expect = 3e-05 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS- 321 ++FVGGL + D+++ F + G++ + LM + T +++GF F+ FE + ++ Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170 Query: 322 ---DLKNXMVRGKQ 354 ++ N MV K+ Sbjct: 171 HFHEINNKMVECKK 184
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 47.0 bits (110), Expect = 2e-05 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +++G + K E L++ F++ G +T +RL + T +KG+A++ +E E AK + Sbjct: 43 IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTM 102 Query: 328 KNXMV--RGKQCG-VAPSRDNDTLFVGNICKT 414 N + R +C V P + + LF+G C T Sbjct: 103 NNYLFCERLLKCEFVTPEKVHPRLFIG--CNT 132
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 47.0 bits (110), Expect = 2e-05 Identities = 22/68 (32%), Positives = 40/68 (58%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +++G L+++ TE D+ VFSE G +V L + T +++GFA+L++E AV +L Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 328 KNXMVRGK 351 + G+ Sbjct: 93 NGFKIGGR 100
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 47.0 bits (110), Expect = 2e-05 Identities = 24/70 (34%), Positives = 41/70 (58%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKN 333 V GL TE DLR+VFS G ++ V ++ + T +++GFAF+ FE ++ +K A+ Sbjct: 123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182 Query: 334 XMVRGKQCGV 363 + G++ V Sbjct: 183 MELDGRRIRV 192
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 47.0 bits (110), Expect = 2e-05 Identities = 20/48 (41%), Positives = 31/48 (64%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRF 288 ++F+GGL + LR FS+ GEI E +M +P TK+++GF F+ F Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69 Score = 46.2 bits (108), Expect = 3e-05 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS- 321 ++FVGGL + D+++ F + G++ + LM + T +++GF F+ FE + ++ Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170 Query: 322 ---DLKNXMVRGKQ 354 ++ N MV K+ Sbjct: 171 HFHEINNKMVECKK 184
>DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 352 Score = 47.0 bits (110), Expect = 2e-05 Identities = 25/67 (37%), Positives = 39/67 (58%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 EV++G L +D E L +F VG + E RLMM + N+GFA+ R+ + A+ A++ Sbjct: 59 EVYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQAAIAT 117 Query: 325 LKNXMVR 345 L N +R Sbjct: 118 LHNHQLR 124
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 46.6 bits (109), Expect = 2e-05 Identities = 21/71 (29%), Positives = 41/71 (57%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 ++ ++V GL K T+ +L ++FS+ G I R++++ VT ++G F+RF+ +A+ A Sbjct: 130 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 189 Query: 316 VSDLKNXMVRG 348 + L G Sbjct: 190 IKGLNGQKPSG 200 Score = 38.1 bits (87), Expect = 0.008 Identities = 19/60 (31%), Positives = 33/60 (55%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV L D+ ES L ++F G + V+++ + T K KGF F+ ++A A++ L Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 46.6 bits (109), Expect = 2e-05 Identities = 21/63 (33%), Positives = 41/63 (65%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 EF++FVG L+K ATE ++ ++F + G + +V LM + ++++G F+++ + E A A+ Sbjct: 210 EFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY-RQSRGCGFVKYSSKETAMAAI 268 Query: 319 SDL 327 L Sbjct: 269 DGL 271 Score = 46.6 bits (109), Expect = 2e-05 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 11/104 (10%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVG + + ATE ++R F + G + EV L+ + T + +G F+++ T + A RA+ Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180 Query: 325 LKNXMVRGKQCGVAPSRDND-----------TLFVGNICKTWTK 423 L N + G R D LFVG++ K T+ Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATE 224
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 46.6 bits (109), Expect = 2e-05 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 7/99 (7%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAK 309 + ++ ++VGGLD+ +ES L ++ + G + V + + VT ++GF F+ F E A Sbjct: 9 RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68 Query: 310 RAVSDLKNXMVRGKQCGVAPSRDND-------TLFVGNI 405 A+ L + GK V + ++ +FVGN+ Sbjct: 69 YAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNL 107 Score = 39.3 bits (90), Expect = 0.004 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 3/92 (3%) Frame = +1 Query: 121 AHXKRKEF--EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTK-KNKGFAFLRFE 291 AH K + +FVG LD + E L FS G I +V +M V +KGFAF+ F Sbjct: 91 AHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFA 150 Query: 292 TVEQAKRAVSDLKNXMVRGKQCGVAPSRDNDT 387 + E + A+ + + + V+ + D+ Sbjct: 151 SFEASDTALEAMNGQFLCNRAITVSYAFKRDS 182
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 46.6 bits (109), Expect = 2e-05 Identities = 28/86 (32%), Positives = 44/86 (51%) Frame = +1 Query: 133 RKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKR 312 R + VFVG L ES L + F + G I VR++ NP+T +GF ++ FE + Sbjct: 282 RDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHL 341 Query: 313 AVSDLKNXMVRGKQCGVAPSRDNDTL 390 A+ L N + G++ V S + + L Sbjct: 342 ALK-LNNSELMGRKLRVMRSVNKEKL 366
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 46.6 bits (109), Expect = 2e-05 Identities = 23/73 (31%), Positives = 43/73 (58%) Frame = +1 Query: 133 RKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKR 312 +K +F+ + +TE D +K+FS GE+ EV + ++ T +KGFA++ F E+A + Sbjct: 322 QKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQ 381 Query: 313 AVSDLKNXMVRGK 351 A +L + +G+ Sbjct: 382 AYIELDKQIFQGR 394 Score = 29.6 bits (65), Expect = 3.0 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTK-KNK----GFAFLRFETVEQAKR 312 +F+ L+ T L F ++ P K KNK GF F+ F T EQA Sbjct: 642 IFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQATA 701 Query: 313 AVSDLKNXMVRG 348 +S + ++ G Sbjct: 702 VISAMDGTVIDG 713
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 46.6 bits (109), Expect = 2e-05 Identities = 27/86 (31%), Positives = 45/86 (52%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +++G L D TE +L+++FS GEI+E + K FAFL+ + A+RA DL Sbjct: 115 LYIGNLTSDVTEEELKELFSPYGEISEAFI------NAEKNFAFLKIDYRANAERAKKDL 168 Query: 328 KNXMVRGKQCGVAPSRDNDTLFVGNI 405 M + K + + + T+ V N+ Sbjct: 169 DGRMRKNKPIRIRFAPNATTIRVKNL 194
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 46.6 bits (109), Expect = 2e-05 Identities = 21/71 (29%), Positives = 41/71 (57%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 ++ ++V GL K T+ +L ++FS+ G I R++++ VT ++G F+RF+ +A+ A Sbjct: 135 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 194 Query: 316 VSDLKNXMVRG 348 + L G Sbjct: 195 IKGLNGQKPSG 205 Score = 38.1 bits (87), Expect = 0.008 Identities = 19/60 (31%), Positives = 33/60 (55%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV L D+ ES L ++F G + V+++ + T K KGF F+ ++A A++ L Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 46.6 bits (109), Expect = 2e-05 Identities = 26/77 (33%), Positives = 42/77 (54%) Frame = +1 Query: 124 HXKRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQ 303 H KR+ VFVG LD + E L K F G+I VR++ + T KGFA+++F+ + Sbjct: 355 HDKRRS--VFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQS 412 Query: 304 AKRAVSDLKNXMVRGKQ 354 +A+ + + GK+ Sbjct: 413 VSKALLLHEKKIHEGKK 429
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 46.6 bits (109), Expect = 2e-05 Identities = 21/71 (29%), Positives = 41/71 (57%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 ++ ++V GL K T+ +L ++FS+ G I R++++ VT ++G F+RF+ +A+ A Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 182 Query: 316 VSDLKNXMVRG 348 + L G Sbjct: 183 IKGLNGQKPSG 193 Score = 38.1 bits (87), Expect = 0.008 Identities = 19/60 (31%), Positives = 33/60 (55%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV L D+ ES L ++F G + V+++ + T K KGF F+ ++A A++ L Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 46.6 bits (109), Expect = 2e-05 Identities = 24/76 (31%), Positives = 40/76 (52%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 +E ++FVG L D L +F G + ++ N T +++GF F+ TVE+A++A Sbjct: 53 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 112 Query: 316 VSDLKNXMVRGKQCGV 363 V L + G+Q V Sbjct: 113 VELLNGYDMDGRQLTV 128 Score = 40.8 bits (94), Expect = 0.001 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Frame = +1 Query: 133 RKEFE----VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVE 300 R +FE V+VG L D S L ++FSE G++ R++ + T +++GF F+ + Sbjct: 142 RGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSES 201 Query: 301 QAKRAVSDLKNXMVRGK 351 + A++ L + G+ Sbjct: 202 EVNDAIAALDGQTLDGR 218
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 46.6 bits (109), Expect = 2e-05 Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 3/89 (3%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L D TE+ L + FS G I +R+ + T+++ G+A++ F+ A+RA+ + Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 328 KNXMVRGKQCGVAPSRDNDTL---FVGNI 405 +++G+ + S+ + L VGN+ Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNV 101 Score = 45.4 bits (106), Expect = 5e-05 Identities = 21/68 (30%), Positives = 41/68 (60%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 V++ +D + LR++FS G V++MM+ T +++GF F+ + E+A++AVS++ Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 328 KNXMVRGK 351 V G+ Sbjct: 252 NGKEVNGR 259 Score = 41.6 bits (96), Expect = 8e-04 Identities = 25/73 (34%), Positives = 39/73 (53%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++V LD + LRK FS G IT ++M +KGF F+ F + E+A +AV+++ Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353 Query: 328 KNXMVRGKQCGVA 366 +V K VA Sbjct: 354 NGRIVSTKPLYVA 366 Score = 35.4 bits (80), Expect = 0.055 Identities = 18/69 (26%), Positives = 34/69 (49%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VF+ LD+ L FS G I +++ + ++G+ F+ FET E A RA+ + Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158 Query: 328 KNXMVRGKQ 354 ++ ++ Sbjct: 159 NGMLLNDRK 167
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 46.6 bits (109), Expect = 2e-05 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 +E ++FVGGL+ + E L FS G I+EV ++ + T++++GF F+ F E A A Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63 Query: 316 VSDLKNXMVRGKQCGV 363 + + + G+Q V Sbjct: 64 MRAMNGESLDGRQIRV 79
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 46.2 bits (108), Expect = 3e-05 Identities = 28/86 (32%), Positives = 47/86 (54%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVG L D TE + +++F++ GE EV + K KGF F++ E+ A+ A ++L Sbjct: 291 LFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAEL 344 Query: 328 KNXMVRGKQCGVAPSRDNDTLFVGNI 405 + +RG+Q V + L V N+ Sbjct: 345 DDTPMRGRQLRVRFATHAAALSVRNL 370
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 46.2 bits (108), Expect = 3e-05 Identities = 22/69 (31%), Positives = 40/69 (57%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV + D DLR+ F G I +V + ++ T++ +GFA+++FE V A+ A+ +L Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71 Query: 328 KNXMVRGKQ 354 + G+Q Sbjct: 72 DRKWICGRQ 80
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 46.2 bits (108), Expect = 3e-05 Identities = 22/69 (31%), Positives = 40/69 (57%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV + D DLR+ F G I +V + ++ T++ +GFA+++FE V A+ A+ +L Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71 Query: 328 KNXMVRGKQ 354 + G+Q Sbjct: 72 DRKWICGRQ 80
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 46.2 bits (108), Expect = 3e-05 Identities = 28/86 (32%), Positives = 47/86 (54%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVG L D TE + +++F++ GE EV + K KGF F++ E+ A+ A ++L Sbjct: 299 LFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAEL 352 Query: 328 KNXMVRGKQCGVAPSRDNDTLFVGNI 405 + +RG+Q V + L V N+ Sbjct: 353 DDTPMRGRQLRVRFATHAAALSVRNL 378
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 46.2 bits (108), Expect = 3e-05 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 21/118 (17%) Frame = +1 Query: 115 VKAHXKRKEFE-------VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGF 273 V+A + +EF+ +FVG L D L ++F + G + ++ N T +++GF Sbjct: 120 VEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGF 179 Query: 274 AFLRFETVEQAKRAVSDLKNXMVRGK--------QCGVAPSRDNDT------LFVGNI 405 F+ TVE+A++AV V G+ + G P R T ++VGNI Sbjct: 180 GFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNI 237 Score = 38.9 bits (89), Expect = 0.005 Identities = 17/81 (20%), Positives = 43/81 (53%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 + + ++VG + ++ L ++FSE G++ R++ + T +++GF F+ + + A Sbjct: 228 QSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDA 287 Query: 316 VSDLKNXMVRGKQCGVAPSRD 378 +++L + G+ V + D Sbjct: 288 IANLDGQSLDGRTIRVNVAED 308
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 46.2 bits (108), Expect = 3e-05 Identities = 20/58 (34%), Positives = 35/58 (60%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 ++FVGGL + E LR+ F + G + V+L+ + T K +GFAF+ F+ + +A+ Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181 Score = 41.6 bits (96), Expect = 8e-04 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 11/98 (11%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++F+GGL TE +L+ + + G++ +V +M + TK+++GF F+ + RA + Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92 Query: 325 ----LKNXMVRGKQCGVAPSRDN-------DTLFVGNI 405 + V K+ P R++ LFVG + Sbjct: 93 RPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGL 130
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 46.2 bits (108), Expect = 3e-05 Identities = 24/89 (26%), Positives = 50/89 (56%), Gaps = 3/89 (3%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +++G L D TE+ L + FS G I +R+ + T+++ G+A++ F+ A+RA+ + Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 328 KNXMVRGKQCGVAPSRDNDTL---FVGNI 405 +++G+ + S+ + L VGN+ Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNV 101 Score = 41.6 bits (96), Expect = 8e-04 Identities = 25/73 (34%), Positives = 39/73 (53%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++V LD + LRK FS G IT ++M +KGF F+ F + E+A +AV+++ Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353 Query: 328 KNXMVRGKQCGVA 366 +V K VA Sbjct: 354 NGRIVSTKPLYVA 366 Score = 35.4 bits (80), Expect = 0.055 Identities = 18/69 (26%), Positives = 34/69 (49%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VF+ LD L FS G+I +++ + ++G+ F+ FET E A RA+ + Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158 Query: 328 KNXMVRGKQ 354 ++ ++ Sbjct: 159 NGMLLNDRK 167
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 45.8 bits (107), Expect = 4e-05 Identities = 23/78 (29%), Positives = 40/78 (51%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG +D AT +L F G + V ++ + + KGFA++ F E + +++ L Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA-L 231 Query: 328 KNXMVRGKQCGVAPSRDN 381 + RG+Q V P R N Sbjct: 232 DESLFRGRQIKVIPKRTN 249
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 45.8 bits (107), Expect = 4e-05 Identities = 23/78 (29%), Positives = 40/78 (51%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG +D AT +L F G + V ++ + + KGFA++ F E + +++ L Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA-L 231 Query: 328 KNXMVRGKQCGVAPSRDN 381 + RG+Q V P R N Sbjct: 232 DESLFRGRQIKVIPKRTN 249
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 45.8 bits (107), Expect = 4e-05 Identities = 23/78 (29%), Positives = 40/78 (51%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG +D AT +L F G + V ++ + + KGFA++ F E + +++ L Sbjct: 169 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA-L 227 Query: 328 KNXMVRGKQCGVAPSRDN 381 + RG+Q V P R N Sbjct: 228 DESLFRGRQIKVIPKRTN 245
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 45.8 bits (107), Expect = 4e-05 Identities = 20/58 (34%), Positives = 35/58 (60%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 ++FVGG+ +D E LR+ F + G+I + +M + + K +GFAF+ FE + + V Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163 Score = 44.3 bits (103), Expect = 1e-04 Identities = 17/59 (28%), Positives = 39/59 (66%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 ++F+GGL + T+ LR+ F + G +T+ +M +P +K+++GF F+ + + ++ A++ Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMT 73
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 45.8 bits (107), Expect = 4e-05 Identities = 20/64 (31%), Positives = 40/64 (62%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 ++ ++V GL K T+ +L ++FS+ G I R++++ VT ++G F+RF+ +A+ A Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182 Query: 316 VSDL 327 + L Sbjct: 183 IKGL 186 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV L DA ES L ++F G +T V+++ + T K KGF F+ ++A A++ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 45.8 bits (107), Expect = 4e-05 Identities = 20/64 (31%), Positives = 40/64 (62%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 ++ ++V GL K T+ +L ++FS+ G I R++++ VT ++G F+RF+ +A+ A Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182 Query: 316 VSDL 327 + L Sbjct: 183 IKGL 186 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV L DA ES L ++F G +T V+++ + T K KGF F+ ++A A++ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 45.8 bits (107), Expect = 4e-05 Identities = 20/64 (31%), Positives = 40/64 (62%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 ++ ++V GL K T+ +L ++FS+ G I R++++ VT ++G F+RF+ +A+ A Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182 Query: 316 VSDL 327 + L Sbjct: 183 IKGL 186 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV L DA ES L ++F G +T V+++ + T K KGF F+ ++A A++ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 45.8 bits (107), Expect = 4e-05 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVE 300 ++FVGGL D E +R+ F GE+ + L M+ T K +GF F+ F E Sbjct: 173 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFNQEE 224
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 45.8 bits (107), Expect = 4e-05 Identities = 19/71 (26%), Positives = 42/71 (59%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 E+ FVGGL +++L + FS+ GE+ + +++ + T +++GF F+ F+ + K A+ Sbjct: 5 EYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 64 Query: 319 SDLKNXMVRGK 351 ++ + G+ Sbjct: 65 DEMNGKELDGR 75
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 45.8 bits (107), Expect = 4e-05 Identities = 20/64 (31%), Positives = 40/64 (62%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 ++ ++V GL K T+ +L ++FS+ G I R++++ VT ++G F+RF+ +A+ A Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182 Query: 316 VSDL 327 + L Sbjct: 183 IKGL 186 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV L DA ES L ++F G +T V+++ + T K KGF F+ ++A A++ L Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 45.8 bits (107), Expect = 4e-05 Identities = 26/73 (35%), Positives = 41/73 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++V LD + LRK FS G IT ++MM ++KGF F+ F + E+A +AV+++ Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 328 KNXMVRGKQCGVA 366 +V K VA Sbjct: 354 NGRIVATKPLYVA 366 Score = 44.7 bits (104), Expect = 9e-05 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Frame = +1 Query: 130 KRKEF-EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQA 306 + KEF V++ +D + L+ +F + G V++M + + K+KGF F+ FE E A Sbjct: 186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDA 244 Query: 307 KRAVSDLKNXMVRGKQ 354 ++AV ++ + GKQ Sbjct: 245 QKAVDEMNGKELNGKQ 260 Score = 38.9 bits (89), Expect = 0.005 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKN--KGFAFLRFETVEQAKRAVS 321 +FV LDK L S G I L N V +N KG+ F+ FET E A+RA+ Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNI----LSCNVVCDENGSKGYGFVHFETHEAAERAIK 156 Query: 322 DLKNXMVRGKQ 354 + ++ G++ Sbjct: 157 KMNGMLLNGRK 167
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 45.8 bits (107), Expect = 4e-05 Identities = 23/68 (33%), Positives = 38/68 (55%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L + TE LR +F G+I + LM + T ++KG+ F+ F E A+RA+ L Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324 Query: 328 KNXMVRGK 351 + G+ Sbjct: 325 NGFELAGR 332
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 45.8 bits (107), Expect = 4e-05 Identities = 19/68 (27%), Positives = 41/68 (60%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VGGL + TE L F G+I ++++ + +++++GFAF+ +E E A A+ ++ Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 328 KNXMVRGK 351 + + G+ Sbjct: 68 NDSELCGR 75
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 45.8 bits (107), Expect = 4e-05 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVG L + T ++R +FS+ G+I+E ++ K F F+ ++ +A A+ + Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSEADEAIQN 54 Query: 325 LKNXMVRGKQCGVAPS----RDNDTLFVGNICKTWT 420 L + M+ G V S + + L VGNI + T Sbjct: 55 LHHYMLNGMAMNVEMSKGKPKTSTKLHVGNISSSCT 90 Score = 40.8 bits (94), Expect = 0.001 Identities = 23/73 (31%), Positives = 34/73 (46%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++ VG + T +LR F E G + E ++ K +AF+ E VE A A+S Sbjct: 79 KLHVGNISSSCTNQELRAKFEEYGPVVECDIV--------KDYAFVHMERVEDAMEAISG 130 Query: 325 LKNXMVRGKQCGV 363 L N +GK V Sbjct: 131 LDNTAFQGKLMSV 143
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 45.4 bits (106), Expect = 5e-05 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Frame = +1 Query: 124 HXKRKEF---EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFET 294 H RK+ ++FVGGL T++ LRK F G+I E ++ + T K++G+ F+ Sbjct: 23 HGSRKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 82 Query: 295 VEQAKRAVSDLKNXMVRGKQCGV 363 A RA D N ++ G++ V Sbjct: 83 RAAADRACKD-PNPIIDGRKANV 104
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 45.4 bits (106), Expect = 5e-05 Identities = 22/77 (28%), Positives = 43/77 (55%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ + + E D RK+FS GE+ EV + ++ T ++KGFA++ F+ + A A +L Sbjct: 347 LFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVEL 406 Query: 328 KNXMVRGKQCGVAPSRD 378 + +G+ + P + Sbjct: 407 DKQIFQGRLLHILPGEE 423
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 45.4 bits (106), Expect = 5e-05 Identities = 27/86 (31%), Positives = 44/86 (51%) Frame = +1 Query: 133 RKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKR 312 R + VFVG L +S L + F + G I VR++ NP+T +GF ++ FE + Sbjct: 288 RDKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHL 347 Query: 313 AVSDLKNXMVRGKQCGVAPSRDNDTL 390 A+ L N + G++ V S + + L Sbjct: 348 ALK-LNNSELMGRKLRVMRSVNKEKL 372
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 45.4 bits (106), Expect = 5e-05 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 3/89 (3%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L + E L+ F + G++ +R+ + T +KG+ F+ FE E AK + Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 328 KNXMV--RGKQCGV-APSRDNDTLFVGNI 405 N ++ R +C V P + ++ LFVG+I Sbjct: 107 NNYLMGERIIKCHVIPPEKVHEKLFVGSI 135
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 45.1 bits (105), Expect = 7e-05 Identities = 20/73 (27%), Positives = 42/73 (57%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 V+VG L + L +FSE G++ E R++ + + ++KGF F+ +++ ++ + A+ L Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265 Query: 328 KNXMVRGKQCGVA 366 + G+Q V+ Sbjct: 266 DGADLDGRQIRVS 278 Score = 38.1 bits (87), Expect = 0.008 Identities = 15/71 (21%), Positives = 36/71 (50%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 + ++FVG L + + L ++F G + V ++ + +T +++GF F+ +V + + A Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149 Query: 319 SDLKNXMVRGK 351 + G+ Sbjct: 150 QQFNGYELDGR 160
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 45.1 bits (105), Expect = 7e-05 Identities = 20/71 (28%), Positives = 39/71 (54%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 ++ ++V L + T+ L +F + G+I + ++ + T +G AF+RF E+A+ A Sbjct: 162 RDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEA 221 Query: 316 VSDLKNXMVRG 348 +S L N + G Sbjct: 222 ISALNNVIPEG 232 Score = 40.4 bits (93), Expect = 0.002 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 6/97 (6%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 + V L +D + +L +F +G I R+M + T + G+ F+ F + A RA+++L Sbjct: 80 LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNL 139 Query: 328 KNXMVRGKQCGVAPSRD------NDTLFVGNICKTWT 420 VR K+ V+ +R + L+V N+ ++ T Sbjct: 140 NGITVRNKRIKVSFARPGGEQLRDTNLYVTNLSRSIT 176
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 45.1 bits (105), Expect = 7e-05 Identities = 21/61 (34%), Positives = 36/61 (59%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 K+ +FVG LD + E L K F G+I VR++ + T KGFA+++F+ ++ +A Sbjct: 277 KKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKA 336 Query: 316 V 318 + Sbjct: 337 L 337
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 45.1 bits (105), Expect = 7e-05 Identities = 20/60 (33%), Positives = 37/60 (61%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKN 333 V L ++ E +LR +F ++G + + + + VT KGFAF+ FE+ + A RA+++L + Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 45.1 bits (105), Expect = 7e-05 Identities = 26/73 (35%), Positives = 39/73 (53%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 +V+VGGL DAT +L ++F G I +V V ++ GFAF+ ++ V A+ AV Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVW-----VARRPPGFAFVEYDDVRDAEDAVRA 58 Query: 325 LKNXMVRGKQCGV 363 L + CGV Sbjct: 59 LDGSRI----CGV 67
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 45.1 bits (105), Expect = 7e-05 Identities = 24/73 (32%), Positives = 41/73 (56%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVGGL T++ LRK F G+I E ++ + T K++G+ F+ A+RA D Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 325 LKNXMVRGKQCGV 363 N ++ G++ V Sbjct: 72 -PNPIIDGRKANV 83
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 45.1 bits (105), Expect = 7e-05 Identities = 24/62 (38%), Positives = 35/62 (56%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAK 309 +R +F+G LD TESDLR+ F G ITEV + P + + FL+FE ++ + Sbjct: 370 QRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDI-KRPSRGQTSTYGFLKFENLDMSH 428 Query: 310 RA 315 RA Sbjct: 429 RA 430
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 45.1 bits (105), Expect = 7e-05 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 ++FVGGL D E LR+ F + G+I V ++ + T K +GFAF+ F+ + + + Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKII 173 Score = 43.9 bits (102), Expect = 2e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRF 288 ++F+GGLD T+ L+ F + G I +V +M +P TK+++GF F+ + Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITY 72
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 45.1 bits (105), Expect = 7e-05 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FVG L D E +R F G I ++ ++++ T K +GFAF+ F+ + + V Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182 Query: 325 LKNXMVRGKQCGV--APSRDND 384 K + GK V A + ND Sbjct: 183 -KQHQLNGKMVDVKKALPKQND 203 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/48 (37%), Positives = 33/48 (68%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRF 288 ++F+GGLD T+ +L+ F + G I +V +M +P TK+++GF F+ + Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITY 79
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 44.7 bits (104), Expect = 9e-05 Identities = 21/56 (37%), Positives = 34/56 (60%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 V L +D E+DL+++F G I+ + L + T ++KGFAF+ F E A RA++ Sbjct: 243 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 298
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 44.7 bits (104), Expect = 9e-05 Identities = 21/56 (37%), Positives = 34/56 (60%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 V L +D E+DL+++F G I+ + L + T ++KGFAF+ F E A RA++ Sbjct: 243 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 298
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 44.7 bits (104), Expect = 9e-05 Identities = 20/75 (26%), Positives = 41/75 (54%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 E+ FVGGL + L + FS+ G+IT+ +++ + T +++GF F+ F+ + + A+ Sbjct: 5 EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAI 64 Query: 319 SDLKNXMVRGKQCGV 363 + + G+ V Sbjct: 65 EGMNGQELDGRNITV 79
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++F+G L ++ATE ++R +F + G++ E ++ K + F+ E A+ A+ + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 325 LKNXMVRGKQCGVAPSRD----NDTLFVGNICKTWT 420 L + + G V S++ + L VGNI T T Sbjct: 55 LHHYKLHGVNINVEASKNKSKASTKLHVGNISPTCT 90 Score = 35.8 bits (81), Expect = 0.042 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++ VG + T +LR F E G + E ++ K +AF+ E E A A+ Sbjct: 79 KLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRG 130 Query: 325 LKNXMVRGKQCGV 363 L N +GK+ V Sbjct: 131 LDNTEFQGKRMHV 143
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++F+G L ++ATE ++R +F + G++ E ++ K + F+ E A+ A+ + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 325 LKNXMVRGKQCGVAPSRD----NDTLFVGNICKTWT 420 L + + G V S++ + L VGNI T T Sbjct: 55 LHHYKLHGVNINVEASKNKSKASTKLHVGNISPTCT 90 Score = 35.8 bits (81), Expect = 0.042 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++ VG + T +LR F E G + E ++ K +AF+ E E A A+ Sbjct: 79 KLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRG 130 Query: 325 LKNXMVRGKQCGV 363 L N +GK+ V Sbjct: 131 LDNTEFQGKRMHV 143
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++F+G L ++ATE ++R +F + G++ E ++ K + F+ E A+ A+ + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 325 LKNXMVRGKQCGVAPSRD----NDTLFVGNICKTWT 420 L + + G V S++ + L VGNI T T Sbjct: 55 LHHYKLHGVNINVEASKNKSKASTKLHVGNISPTCT 90 Score = 35.8 bits (81), Expect = 0.042 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++ VG + T +LR F E G + E ++ K +AF+ E E A A+ Sbjct: 79 KLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRG 130 Query: 325 LKNXMVRGKQCGV 363 L N +GK+ V Sbjct: 131 LDNTEFQGKRMHV 143
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++F+G L ++ATE ++R +F + G++ E ++ K + F+ E A+ A+ + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 325 LKNXMVRGKQCGVAPSRD----NDTLFVGNICKTWT 420 L + + G V S++ + L VGNI T T Sbjct: 55 LHHYKLHGVNINVEASKNKSKASTKLHVGNISPTCT 90 Score = 35.8 bits (81), Expect = 0.042 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++ VG + T +LR F E G + E ++ K +AF+ E E A A+ Sbjct: 79 KLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRG 130 Query: 325 LKNXMVRGKQCGV 363 L N +GK+ V Sbjct: 131 LDNTEFQGKRMHV 143
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++F+G L ++ATE ++R +F + G++ E ++ K + F+ E A+ A+ + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 325 LKNXMVRGKQCGVAPSRD----NDTLFVGNICKTWT 420 L + + G V S++ + L VGNI T T Sbjct: 55 LHHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCT 90 Score = 35.8 bits (81), Expect = 0.042 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++ VG + T +LR F E G + E ++ K +AF+ E E A A+ Sbjct: 79 KLHVGNISPTCTNKELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRG 130 Query: 325 LKNXMVRGKQCGV 363 L N +GK+ V Sbjct: 131 LDNTEFQGKRMHV 143
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++F+G L ++ATE ++R +F + G++ E ++ K + F+ E A+ A+ + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 325 LKNXMVRGKQCGVAPSRD----NDTLFVGNICKTWT 420 L + + G V S++ + L VGNI T T Sbjct: 55 LHHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCT 90 Score = 35.8 bits (81), Expect = 0.042 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++ VG + T +LR F E G + E ++ K +AF+ E E A A+ Sbjct: 79 KLHVGNISPTCTNKELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRG 130 Query: 325 LKNXMVRGKQCGV 363 L N +GK+ V Sbjct: 131 LDNTEFQGKRMHV 143
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++F+G L ++ATE ++R +F + G++ E ++ K + F+ E A+ A+ + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 325 LKNXMVRGKQCGVAPSRD----NDTLFVGNICKTWT 420 L + + G V S++ + L VGNI T T Sbjct: 55 LHHYKLHGVNINVEASKNKSKASTKLHVGNISPTCT 90 Score = 35.8 bits (81), Expect = 0.042 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++ VG + T +LR F E G + E ++ K +AF+ E E A A+ Sbjct: 79 KLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRG 130 Query: 325 LKNXMVRGKQCGV 363 L N +GK+ V Sbjct: 131 LDNTEFQGKRMHV 143
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAK 309 +R +F+G LD +E +LR+ F + G I EV ++ P + +AFL+F+ ++ A Sbjct: 6 QRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEV-VIKRPARGQGGAYAFLKFQNLDMAH 64 Query: 310 RAVSDLKNXMVRGKQCGVAPSRDNDT--LFVGNI 405 RA + ++ + + N T L+VG + Sbjct: 65 RAKVAMSGRVIGRNPIKIGYGKANPTTRLWVGGL 98
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 564 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAK 309 +R +F+G LD +E +LR+ F + G I EV ++ P + +AFL+F+ ++ A Sbjct: 6 QRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEV-VIKRPARGQGGAYAFLKFQNLDMAH 64 Query: 310 RAVSDLKNXMVRGKQCGVAPSRDNDT--LFVGNI 405 RA + ++ + + N T L+VG + Sbjct: 65 RAKVAMSGRVIGRNPIKIGYGKANPTTRLWVGGL 98
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 44.3 bits (103), Expect = 1e-04 Identities = 20/57 (35%), Positives = 37/57 (64%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 VF+ L D+ E +L ++ + GE+ VR++++P T+ +KG AF +F T E A++ + Sbjct: 336 VFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCL 392 Score = 38.9 bits (89), Expect = 0.005 Identities = 17/60 (28%), Positives = 34/60 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVG L A L ++FS+VG + + ++ +K +GF ++ F +E +RA+ ++ Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 44.3 bits (103), Expect = 1e-04 Identities = 21/83 (25%), Positives = 42/83 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +F+ L E DL+ +F G++ +V + ++ T KGFA++ F + A RA +L Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384 Query: 328 KNXMVRGKQCGVAPSRDNDTLFV 396 +G+ V P++ ++ + Sbjct: 385 DAKPFQGRLLHVLPAKARSSILL 407 Score = 38.9 bits (89), Expect = 0.005 Identities = 21/74 (28%), Positives = 38/74 (51%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAK 309 K K ++ + L +AT+ D++ + G++ VR+ + +GFAF F T +A Sbjct: 717 KPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKK-FDRSARGFAFAEFVTAREAA 775 Query: 310 RAVSDLKNXMVRGK 351 A+ LKN + G+ Sbjct: 776 NAMRALKNTHLLGR 789
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 44.3 bits (103), Expect = 1e-04 Identities = 25/75 (33%), Positives = 41/75 (54%) Frame = +1 Query: 133 RKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKR 312 +K ++ V GL TE DL++ FS GE+ V++ + T +KGF F+RF E + Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 160 Query: 313 AVSDLKNXMVRGKQC 357 +S + M+ G+ C Sbjct: 161 VMS--QRHMIDGRWC 173 Score = 35.0 bits (79), Expect = 0.072 Identities = 18/48 (37%), Positives = 29/48 (60%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRF 288 +VFVG +D TE +LR+ FS+ G++ +V + K + FAF+ F Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVF-----IPKPFRAFAFVTF 234
>DND1_XENLA (Q6DCB7) Dead end protein homolog 1| Length = 371 Score = 44.3 bits (103), Expect = 1e-04 Identities = 27/80 (33%), Positives = 42/80 (52%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 EVF+G + +D E L +F VG++ E RLMM + N+GFA+ R+ + QA A+ Sbjct: 78 EVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMMT-FSGLNRGFAYARYISRRQAISAIMS 136 Query: 325 LKNXMVRGKQCGVAPSRDND 384 L + K C + R + Sbjct: 137 LNGFEIT-KGCCIVVCRSTE 155
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 43.9 bits (102), Expect = 2e-04 Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 7/99 (7%) Frame = +1 Query: 130 KRKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAK 309 + ++ V+VGGLD+ +E L ++F + G + + + VT +++G+ F+ F + E A Sbjct: 9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68 Query: 310 RAVSDLKNXMVRGKQCGV----APSRDND---TLFVGNI 405 A+ + + GK V A +++ D +F+GN+ Sbjct: 69 YAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNL 107 Score = 39.7 bits (91), Expect = 0.003 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Frame = +1 Query: 121 AHXKRKEF--EVFVGGLDKDATESDLRKVFSEVGEITEV-RLMMNPVTKKNKGFAFLRFE 291 AH K + +F+G LD + E L FS G I + ++M +P T +KG+AF+ F Sbjct: 91 AHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA 150 Query: 292 TVEQAKRAV 318 + + + A+ Sbjct: 151 SFDASDAAI 159
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 43.9 bits (102), Expect = 2e-04 Identities = 18/64 (28%), Positives = 40/64 (62%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 ++ ++V GL K ++ ++ ++FS+ G I R++++ VT ++G F+RF+ +A+ A Sbjct: 123 RDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 182 Query: 316 VSDL 327 + L Sbjct: 183 IKGL 186 Score = 40.8 bits (94), Expect = 0.001 Identities = 20/60 (33%), Positives = 34/60 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV L +A ES L ++F G +T V+++ + T K KGF F+ ++A A++ L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/68 (33%), Positives = 36/68 (52%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVG L D T+ LRK F G+I ++R+ + K KGFAF+ F+ E + + D Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDK 300 Query: 328 KNXMVRGK 351 + G+ Sbjct: 301 SCRKIAGR 308 Score = 38.1 bits (87), Expect = 0.008 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 17/104 (16%) Frame = +1 Query: 118 KAHXKRKEFEVFVGGLDKDATESDLRKVF--------SEVGEITE---VRLMM------N 246 K ++ V++G L D T+ DL + F E +TE RL M N Sbjct: 117 KKKKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRLSMPRVAAKN 176 Query: 247 PVTKKNKGFAFLRFETVEQAKRAVSDLKNXMVRGKQCGVAPSRD 378 KNKGF ++ F+ VEQ K AV +L + G+ + S + Sbjct: 177 SNAMKNKGFCYMFFKNVEQMK-AVLELSESHLNGRNMLIKDSEN 219
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 43.9 bits (102), Expect = 2e-04 Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVF-SEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 +FVG L + TES L ++F + + +++ + VT +KG+ F++F ++ + A+S+ Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224 Query: 325 LKNXMVRGKQCGVAPSRDNDTLFVGN 402 ++ + G+ V P+ GN Sbjct: 225 MQGVFLNGRAIKVGPTSGQQQHVSGN 250 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRL 237 VF+GGL TE +LR F G I V++ Sbjct: 315 VFIGGLSSLVTEDELRAYFQPFGTIVYVKI 344
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 43.9 bits (102), Expect = 2e-04 Identities = 17/71 (23%), Positives = 42/71 (59%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 E+ FVGGL + DL++ FS+ G++ + +++ + + +++GF F+ F+ + + A+ Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64 Query: 319 SDLKNXMVRGK 351 ++ + G+ Sbjct: 65 EEMNGKELDGR 75
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 43.9 bits (102), Expect = 2e-04 Identities = 20/68 (29%), Positives = 41/68 (60%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 V++ +D + LR++FS G V++MM+ + +++GF F+ + E+A++AVS++ Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 328 KNXMVRGK 351 V G+ Sbjct: 252 NGKEVNGR 259 Score = 39.3 bits (90), Expect = 0.004 Identities = 24/73 (32%), Positives = 38/73 (52%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++V LD + LRK F G IT ++M +KGF F+ F + E+A +AV+++ Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353 Query: 328 KNXMVRGKQCGVA 366 +V K VA Sbjct: 354 NGRIVSTKPLYVA 366 Score = 35.0 bits (79), Expect = 0.072 Identities = 18/69 (26%), Positives = 34/69 (49%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VF+ LD+ L FS G I +++ + ++G+ F+ FET E A RA+ + Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTM 158 Query: 328 KNXMVRGKQ 354 ++ ++ Sbjct: 159 NGMLLNDRK 167
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L D +E+DL VF+E G + V+L + T + +GF F+ E + A+ L Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 328 KNXMVRGKQCGV--APSRDN 381 G+ V A R+N Sbjct: 63 DGAEWMGRDLKVNKAKPREN 82
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 43.9 bits (102), Expect = 2e-04 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 14/104 (13%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 ++ ++FVG L D L ++F + G + ++ N T +++GF F+ TVE+A +A Sbjct: 95 EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKA 154 Query: 316 VS-----DLKNXMV-------RGKQCGVAPSRDNDT--LFVGNI 405 V DL ++ RG + AP T ++VGNI Sbjct: 155 VELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNI 198 Score = 41.2 bits (95), Expect = 0.001 Identities = 16/70 (22%), Positives = 40/70 (57%) Frame = +1 Query: 142 FEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 + ++VG + D ++ L +VFSE G++ R++ + + +++GF F+ + + A++ Sbjct: 191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIA 250 Query: 322 DLKNXMVRGK 351 +L + G+ Sbjct: 251 NLDGQTLDGR 260
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F| Length = 941 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/76 (32%), Positives = 44/76 (57%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++FV L ++ +L ++FS G I +VRL ++ + K+ KG A++ FE +A+RAV+ Sbjct: 725 KIFVRNLHPACSKEELHELFSPFGTIKDVRL-VHKLNKQFKGIAYVEFEKPGEAQRAVAG 783 Query: 325 LKNXMVRGKQCGVAPS 372 + +G VA S Sbjct: 784 RDGCLFKGMNISVAIS 799
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 43.9 bits (102), Expect = 2e-04 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 6/97 (6%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 + V L +D T+ +L +F +G I R+M + T + G+AF+ F ++RA+ L Sbjct: 112 LIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSL 171 Query: 328 KNXMVRGKQCGVAPSR------DNDTLFVGNICKTWT 420 VR K+ V+ +R + L+V N+ +T T Sbjct: 172 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTIT 208
>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic| region Length = 713 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/68 (33%), Positives = 37/68 (54%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVG LDK+ T +L + FS G+I ++ L+ P FAF+++ET E A A+ Sbjct: 348 IFVGQLDKETTREELNRRFSTHGKIQDINLIFKPTNI----FAFIKYETEEAAAAALESE 403 Query: 328 KNXMVRGK 351 + + K Sbjct: 404 NHAIFLNK 411 Score = 34.7 bits (78), Expect = 0.094 Identities = 19/89 (21%), Positives = 46/89 (51%), Gaps = 4/89 (4%) Frame = +1 Query: 148 VFVGGLDKDATESDL----RKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 +FV L ++ +L + F + G++ V+++ + N+ +AF+++ AK A Sbjct: 95 IFVASLAAALSDDELCLSVTENFKKYGDLARVKVLRD---NANRPYAFVQYNNDHDAKHA 151 Query: 316 VSDLKNXMVRGKQCGVAPSRDNDTLFVGN 402 + + ++ G++ P++ N TL++ N Sbjct: 152 LIRAQGTLLNGRRLRCEPAKVNRTLYLKN 180
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 43.5 bits (101), Expect = 2e-04 Identities = 23/68 (33%), Positives = 37/68 (54%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFVG L +A E L + F + G I VR++ +P T KGFA+++F+ +A+ Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331 Query: 328 KNXMVRGK 351 + M G+ Sbjct: 332 EKKMPEGR 339
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 43.5 bits (101), Expect = 2e-04 Identities = 21/75 (28%), Positives = 39/75 (52%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 E+ FVGGL E L FS+ GE+ + +++ + T +++GF F+ F+ + K A+ Sbjct: 7 EYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66 Query: 319 SDLKNXMVRGKQCGV 363 + + G+ V Sbjct: 67 EGMNGQDLDGRSITV 81
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 43.5 bits (101), Expect = 2e-04 Identities = 25/75 (33%), Positives = 40/75 (53%) Frame = +1 Query: 133 RKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKR 312 +K ++ V GL TE DL+ FS GE+ V++ + T +KGF F+RF E + Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 160 Query: 313 AVSDLKNXMVRGKQC 357 +S + M+ G+ C Sbjct: 161 VMS--QRHMIDGRWC 173 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRF 288 +VFVG +D T +L++ F + GE+ +V + K + FAF+ F Sbjct: 192 KVFVGRCTEDMTAEELQQFFCQYGEVVDVF-----IPKPFRAFAFVTF 234
>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)| Length = 700 Score = 43.5 bits (101), Expect = 2e-04 Identities = 26/86 (30%), Positives = 45/86 (52%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L D T+ +LR++F GEI+E+ + +K F FL+ + A++A L Sbjct: 304 LYVGNLTNDITDDELREMFKPYGEISEI------FSNLDKNFTFLKVDYHPNAEKAKRAL 357 Query: 328 KNXMVRGKQCGVAPSRDNDTLFVGNI 405 M +G+Q V + + L V N+ Sbjct: 358 DGSMRKGRQLRVRFAPNATILRVSNL 383
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 43.5 bits (101), Expect = 2e-04 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Frame = +1 Query: 172 DATE-SDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKNXMVRG 348 DAT DLR+ F G I +V + ++ T++ +GFA+++FE V A+ A+ +L V G Sbjct: 19 DATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCG 78 Query: 349 KQ 354 +Q Sbjct: 79 RQ 80
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 43.1 bits (100), Expect = 3e-04 Identities = 22/80 (27%), Positives = 41/80 (51%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV L + ES+L VFS G+I E+ + + +KGFA++++ + A A +L Sbjct: 297 LFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNL 356 Query: 328 KNXMVRGKQCGVAPSRDNDT 387 + +G+ + P+ T Sbjct: 357 DGKIFQGRLLHILPASQKKT 376 Score = 38.1 bits (87), Expect = 0.008 Identities = 19/70 (27%), Positives = 37/70 (52%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++ + L AT+ D+R +F G++ VR+ + +GF F F + +A+ A+ Sbjct: 698 KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKK-FDRSARGFGFADFVSAREAENAMDA 756 Query: 325 LKNXMVRGKQ 354 LKN + G++ Sbjct: 757 LKNTHLLGRR 766
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 42.7 bits (99), Expect = 3e-04 Identities = 20/70 (28%), Positives = 37/70 (52%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKN 333 + L T +DLR+ F G+I +V + + ++++KGF F+RF A+ A+ Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82 Query: 334 XMVRGKQCGV 363 +V G++ V Sbjct: 83 KLVDGRELRV 92
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 42.7 bits (99), Expect = 3e-04 Identities = 17/64 (26%), Positives = 39/64 (60%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 ++ ++V GL K ++ ++ ++FS+ G I R++++ T ++G F+RF+ +A+ A Sbjct: 123 RDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEA 182 Query: 316 VSDL 327 + L Sbjct: 183 IKGL 186 Score = 40.8 bits (94), Expect = 0.001 Identities = 20/60 (33%), Positives = 34/60 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV L +A ES L ++F G +T V+++ + T K KGF F+ ++A A++ L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 42.7 bits (99), Expect = 3e-04 Identities = 21/58 (36%), Positives = 36/58 (62%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 ++F+G + K TE+D+R +FS G+I E R++ P ++G AF+ F T A+ A+ Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRTMAQTAI 165 Score = 38.1 bits (87), Expect = 0.008 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 14/107 (13%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLM----MNPVTKKNKGFAFLRFETVEQAKR 312 ++FVG + + +E DLR++F + G + E+ ++ NP ++KG F+ F T + A Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNP--PQSKGCCFVTFYTRKAALE 74 Query: 313 AVSDLKNXMV-----RGKQCGVAPSRDNDT-----LFVGNICKTWTK 423 A + L N V Q A S N+ LF+G I K T+ Sbjct: 75 AQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTE 121
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 42.7 bits (99), Expect = 3e-04 Identities = 21/58 (36%), Positives = 36/58 (62%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 ++F+G + K TE+D+R +FS G+I E R++ P ++G AF+ F T A+ A+ Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAI 165 Score = 37.7 bits (86), Expect = 0.011 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 14/107 (13%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLM----MNPVTKKNKGFAFLRFETVEQAKR 312 ++FVG + + +E DLR++F + G + E+ ++ NP ++KG F+ F T + A Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNP--PQSKGCCFVTFYTRKAALE 74 Query: 313 AVSDLKNXMV-----RGKQCGVAPSRDNDT-----LFVGNICKTWTK 423 A + L N V Q A S N+ LF+G I K T+ Sbjct: 75 AQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTE 121
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 42.7 bits (99), Expect = 3e-04 Identities = 18/75 (24%), Positives = 41/75 (54%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 V+VG L + L +FSE G++ + +++ + + +++GF F+ + + E+ A+ L Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249 Query: 328 KNXMVRGKQCGVAPS 372 + G+ V+P+ Sbjct: 250 DGVDLNGRAIRVSPA 264 Score = 38.9 bits (89), Expect = 0.005 Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 + ++FVG L A + L ++F G + V ++ + +T +++GF F+ + E+ + A Sbjct: 86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145 Query: 319 SDLKNXMVRGK----QCGVAPSRDNDTLFVG 399 + G+ G P + ++ F G Sbjct: 146 QQFNGYELDGRALRVNSGPPPEKRENSSFRG 176
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 42.7 bits (99), Expect = 3e-04 Identities = 18/75 (24%), Positives = 41/75 (54%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 V+VG L + L +FSE G++ + +++ + + +++GF F+ + + E+ A+ L Sbjct: 196 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 255 Query: 328 KNXMVRGKQCGVAPS 372 + G+ V+P+ Sbjct: 256 DGVDLNGRAIRVSPA 270 Score = 37.0 bits (84), Expect = 0.019 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 4/92 (4%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 + ++FVG L A + L ++F G + V ++ + +T +++GF F+ + E+ + A Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145 Query: 319 SDLKNXMVRGK----QCGVAPSRDNDTLFVGN 402 + G+ G P + ++ F N Sbjct: 146 QQFNGYELDGRALRVNSGPPPEKRENSSFREN 177
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 42.7 bits (99), Expect = 3e-04 Identities = 20/58 (34%), Positives = 37/58 (63%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 VF+ L D+ E L +V + G++ VR++++P T+ +KG AF +F T E A++ ++ Sbjct: 326 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 383 Score = 38.9 bits (89), Expect = 0.005 Identities = 17/60 (28%), Positives = 34/60 (56%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVG L A L ++FS+VG + + ++ +K +GF ++ F +E +RA+ ++ Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 42.7 bits (99), Expect = 3e-04 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 6/97 (6%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 + V L +D T+ +L +F +G I R+M + T + G+AF+ F + ++RA+ L Sbjct: 129 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 188 Query: 328 KNXMVRGKQCGVAPSR------DNDTLFVGNICKTWT 420 VR K+ V+ +R + L+V N+ +T T Sbjct: 189 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTIT 225
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 42.7 bits (99), Expect = 3e-04 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 6/97 (6%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 + V L +D T+ +L +F +G I R+M + T + G+AF+ F + ++RA+ L Sbjct: 127 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 186 Query: 328 KNXMVRGKQCGVAPSR------DNDTLFVGNICKTWT 420 VR K+ V+ +R + L+V N+ +T T Sbjct: 187 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTIT 223
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 42.4 bits (98), Expect = 4e-04 Identities = 18/73 (24%), Positives = 42/73 (57%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L + L +F+E G++ E R++ + + ++KGF F+ + ++ ++A++ L Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318 Query: 328 KNXMVRGKQCGVA 366 + G+Q V+ Sbjct: 319 NGADLDGRQIRVS 331 Score = 38.5 bits (88), Expect = 0.006 Identities = 16/71 (22%), Positives = 34/71 (47%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 + ++FVG L + + L ++F G + V ++ + VT +++GF F+ T + + A Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157 Query: 319 SDLKNXMVRGK 351 G+ Sbjct: 158 QQFNGYEFEGR 168
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 42.4 bits (98), Expect = 4e-04 Identities = 26/80 (32%), Positives = 40/80 (50%) Frame = +1 Query: 133 RKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKR 312 R + VFVG L ES + K F + G I VR++ + +T KGF ++ FE + Sbjct: 284 RDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHL 343 Query: 313 AVSDLKNXMVRGKQCGVAPS 372 A+ L N + G++ V S Sbjct: 344 ALK-LNNSELMGRKLRVMRS 362 Score = 28.1 bits (61), Expect = 8.8 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 22/113 (19%) Frame = +1 Query: 133 RKEFEVFVGGLDKDATESDLRKVFSEVGEITEVRL-------------------MMNPVT 255 + E VFVG L + L+ F E G+I VR ++P Sbjct: 182 KNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQ 241 Query: 256 KKNKGFAFLRFET--VEQAKRAVSDLKNXM-VRGKQCGVAPSRDNDTLFVGNI 405 K + + E+ + KR + + + +R SRD ++FVGN+ Sbjct: 242 KNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNL 294
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 42.4 bits (98), Expect = 4e-04 Identities = 21/78 (26%), Positives = 40/78 (51%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FVG + D T + F + G+I + L+ + T KG+ ++ FE+ ++A+ L Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKAL-QL 124 Query: 328 KNXMVRGKQCGVAPSRDN 381 ++GK+ V+ R N Sbjct: 125 NGGELKGKKIAVSRKRTN 142
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 42.4 bits (98), Expect = 4e-04 Identities = 21/73 (28%), Positives = 40/73 (54%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +++ LD + L+++FSE G +T ++MMN ++GF F+ + E+A A+ ++ Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEM 388 Query: 328 KNXMVRGKQCGVA 366 M+ K VA Sbjct: 389 NGKMIGRKPLYVA 401 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/69 (31%), Positives = 36/69 (52%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VF+ LD L + FS G I ++ M+ V ++KG+ F++FE E A+ A+ L Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 192 Query: 328 KNXMVRGKQ 354 ++ KQ Sbjct: 193 NGMLLNDKQ 201
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 42.4 bits (98), Expect = 4e-04 Identities = 21/69 (30%), Positives = 39/69 (56%) Frame = +1 Query: 145 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 ++ + L +AT+ D+R +FS G++ VRL +GF F+ + TV +A+ A+ Sbjct: 720 KILIKNLPFEATKRDIRDLFSSQGQLKSVRL-PKKFDNTTRGFGFVEYSTVREAQSAMEA 778 Query: 325 LKNXMVRGK 351 LK+ + G+ Sbjct: 779 LKHTHLLGR 787
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 42.4 bits (98), Expect = 4e-04 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 13/103 (12%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKN 333 V L ATE LR+VF + T +R+ N + KGFAF+ F + E AK A+ N Sbjct: 418 VNNLSYSATEDSLREVFEKA---TSIRIPQNQ--GRAKGFAFIEFSSAEDAKDAMDSCNN 472 Query: 334 XMVRGKQC-------------GVAPSRDNDTLFVGNICKTWTK 423 + G+ G S + TLFV + + T+ Sbjct: 473 TEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSEDTTE 515 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV GL +D TE L++ F G + R++ + T +KGF F+ F T E AK A + Sbjct: 504 LFVRGLSEDTTEETLKEAFD--GSVN-ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAM 560 Query: 328 KNXMVRGKQ 354 ++ + G + Sbjct: 561 EDGEIDGNK 569
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 42.0 bits (97), Expect = 6e-04 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTK-KNKGFAFLRFETVEQAKR 312 K ++V GL K T+ +L +F+ G I R++ N + KG F+RF+ E+A R Sbjct: 282 KGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATR 341 Query: 313 AVSDLKNXMVRGKQCGVAPSRDNDTLFV 396 A+ L G PS D + V Sbjct: 342 AIIALN---------GTTPSSCTDPIVV 360 Score = 36.2 bits (82), Expect = 0.032 Identities = 15/62 (24%), Positives = 33/62 (53%) Frame = +1 Query: 142 FEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 + +F+ L + E+ L ++F G + V+++ +P T + KG+ F+ ++A A+ Sbjct: 438 YPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIR 497 Query: 322 DL 327 L Sbjct: 498 AL 499
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 42.0 bits (97), Expect = 6e-04 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Frame = +1 Query: 136 KEFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTK-KNKGFAFLRFETVEQAKR 312 K ++V GL K T+ +L +F+ G I R++ N + KG F+RF+ E+A R Sbjct: 246 KGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATR 305 Query: 313 AVSDLKNXMVRGKQCGVAPSRDNDTLFV 396 A+ L G PS D + V Sbjct: 306 AIIALN---------GTTPSSCTDPIVV 324 Score = 36.2 bits (82), Expect = 0.032 Identities = 15/62 (24%), Positives = 33/62 (53%) Frame = +1 Query: 142 FEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVS 321 + +F+ L + E+ L ++F G + V+++ +P T + KG+ F+ ++A A+ Sbjct: 402 YPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIR 461 Query: 322 DL 327 L Sbjct: 462 AL 463
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 41.6 bits (96), Expect = 8e-04 Identities = 20/75 (26%), Positives = 39/75 (52%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAV 318 E+ FVGGL + L FS+ GE+ + +++ + T +++GF F+ F+ + K A+ Sbjct: 7 EYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66 Query: 319 SDLKNXMVRGKQCGV 363 + + G+ V Sbjct: 67 EGMNGQDLDGRSITV 81
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 41.6 bits (96), Expect = 8e-04 Identities = 21/74 (28%), Positives = 40/74 (54%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKN 333 V L + LR+VF + G + +V + + TK+++GFAF+RF A+ A+ + Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77 Query: 334 XMVRGKQCGVAPSR 375 ++ G++ V +R Sbjct: 78 AVLDGRELRVQMAR 91
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 41.6 bits (96), Expect = 8e-04 Identities = 20/68 (29%), Positives = 39/68 (57%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV + ++A E ++++ F + GEI + L ++ T +KG+A + +ET +QA A L Sbjct: 75 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134 Query: 328 KNXMVRGK 351 + G+ Sbjct: 135 NGAEIMGQ 142
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 41.6 bits (96), Expect = 8e-04 Identities = 21/74 (28%), Positives = 40/74 (54%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKN 333 V L + LR+VF + G + +V + + TK+++GFAF+RF A+ A+ + Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 334 XMVRGKQCGVAPSR 375 ++ G++ V +R Sbjct: 77 AVLDGRELRVQMAR 90
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 41.6 bits (96), Expect = 8e-04 Identities = 21/74 (28%), Positives = 40/74 (54%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKN 333 V L + LR+VF + G + +V + + TK+++GFAF+RF A+ A+ + Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 334 XMVRGKQCGVAPSR 375 ++ G++ V +R Sbjct: 77 AVLDGRELRVQMAR 90
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 41.6 bits (96), Expect = 8e-04 Identities = 21/74 (28%), Positives = 40/74 (54%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKN 333 V L + LR+VF + G + +V + + TK+++GFAF+RF A+ A+ + Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 334 XMVRGKQCGVAPSR 375 ++ G++ V +R Sbjct: 77 AVLDGRELRVQMAR 90
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 41.6 bits (96), Expect = 8e-04 Identities = 21/74 (28%), Positives = 40/74 (54%) Frame = +1 Query: 154 VGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDLKN 333 V L + LR+VF + G + +V + + TK+++GFAF+RF A+ A+ + Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 334 XMVRGKQCGVAPSR 375 ++ G++ V +R Sbjct: 77 AVLDGRELRVQMAR 90
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/55 (36%), Positives = 36/55 (65%) Frame = +1 Query: 163 LDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 + K +ES LR+ FS G+I ++ ++ + TK++KG AF++F QA RA+ ++ Sbjct: 32 ISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEM 86 Score = 38.1 bits (87), Expect = 0.008 Identities = 18/54 (33%), Positives = 31/54 (57%) Frame = +1 Query: 163 LDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 324 + K TE DLR+ F G+I ++ N VT ++KG ++R+ QA +A+ + Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAIEN 180
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 41.2 bits (95), Expect = 0.001 Identities = 19/69 (27%), Positives = 36/69 (52%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 +FV L+ +++ES +++ F G I V L+ + +T K KG+AF+ + K A Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199 Query: 328 KNXMVRGKQ 354 + G++ Sbjct: 200 DGQKIDGRR 208
>NONA_DROLR (Q9GRX4) Protein no-on-transient A| Length = 698 Score = 41.2 bits (95), Expect = 0.001 Identities = 26/86 (30%), Positives = 43/86 (50%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 ++VG L D T+ +LR++F GEI E+ + K F FL+ + A++A L Sbjct: 283 LYVGNLTNDITDEELREMFKPYGEIGEI------FSNLEKNFTFLKVDYHINAEKAKRAL 336 Query: 328 KNXMVRGKQCGVAPSRDNDTLFVGNI 405 M +G+Q V + + L V N+ Sbjct: 337 DGSMRKGRQLRVRFAPNATILRVSNL 362
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 41.2 bits (95), Expect = 0.001 Identities = 19/54 (35%), Positives = 35/54 (64%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAK 309 +FVGG TE++LR+ F + + +V+ M+ + ++KG+ F+ FET +QA+ Sbjct: 69 IFVGGFPTSTTETELREHFEKFFAVKDVK-MVKSLDGQSKGYGFITFETEDQAE 121
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 40.8 bits (94), Expect = 0.001 Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +1 Query: 139 EFEVFVGGLDKDATESDLRKVFSEV-GEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRA 315 EF +FVG L +SDL F + T +++++PVT ++ + F+RF + ++ + A Sbjct: 181 EFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHA 240 Query: 316 VSDLKNXMVRGK 351 + ++ + +G+ Sbjct: 241 LMHMQGYLCQGR 252 Score = 36.2 bits (82), Expect = 0.032 Identities = 18/65 (27%), Positives = 34/65 (52%) Frame = +1 Query: 148 VFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSDL 327 VFVGGL + +E DL+ F G I +++ KG F+++ A++A++ + Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPF------GKGCGFVQYSEKSAAEKAINTM 352 Query: 328 KNXMV 342 + +V Sbjct: 353 QGALV 357 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,016,030 Number of Sequences: 219361 Number of extensions: 658678 Number of successful extensions: 2537 Number of sequences better than 10.0: 383 Number of HSP's better than 10.0 without gapping: 2243 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2479 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
