ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags31d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009392.1| Triticum aestivum clone wlm96.pk037.f18:fis, full... 751 0.0
2ref|NM_197149.1| Oryza sativa (japonica cultivar-group) putative... 414 e-112
3dbj|AK071544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 408 e-111
4gb|AY108206.1| Zea mays PCO093732 mRNA sequence 317 2e-83
5gb|BT017894.1| Zea mays clone EL01N0515C03.c mRNA sequence 285 6e-74
6gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genom... 155 2e-34
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 155 2e-34
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
9gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 gen... 147 4e-32
10dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 147 4e-32
12gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 50 0.007
13gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 44 0.41
14gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta... 44 0.41
15gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.41
16emb|AL354833.9| Human DNA sequence from clone RP11-157L14 on chr... 42 1.6
17emb|AL080274.21|HS1012F16 Human DNA sequence from clone RP5-1012... 42 1.6
18gb|AC147383.4| Pan troglodytes BAC clone RP43-157C2 from 7, comp... 40 6.3
19gb|AC002540.1| Homo sapiens BAC clone GS1-25M2 from 7, complete ... 40 6.3
20emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete ... 40 6.3
21emb|AJ009897.1|TNAJ9897 Thermotoga neapolitana argC, argJ genes ... 40 6.3
22gb|AC108487.2| Homo sapiens chromosome 3 clone RP11-733E24, comp... 40 6.3
23gb|AC025946.9| Homo sapiens chromosome 10 clone RP11-543F8, comp... 40 6.3
24gb|AC152954.1| Mus musculus 6 BAC RP23-296N5 (Roswell Park Cance... 40 6.3
25gb|AC006986.3|AC006986 Homo sapiens BAC clone RP11-155J5 from Y,... 40 6.3
26gb|AC025812.11|AC025812 Homo sapiens chromosome 3 clone RP11-182... 40 6.3
27gb|AC087653.6| Homo sapiens chromosome 11, clone RP1-259N9, comp... 40 6.3
28gb|AC011286.7| Homo sapiens BAC clone RP11-4H21 from 2, complete... 40 6.3
29dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 6.3
30gb|AF152365.1|AF152365 Homo sapiens constitutive fragile region ... 40 6.3
31gb|AF115103.1|AF115103 Streptococcus thermophilus bacteriophage ... 40 6.3
32emb|BX005050.6| Zebrafish DNA sequence from clone CH211-11A11, c... 40 6.3 
>gb|BT009392.1| Triticum aestivum clone wlm96.pk037.f18:fis, full insert mRNA
            sequence
          Length = 1654

 Score =  751 bits (379), Expect = 0.0
 Identities = 437/454 (96%), Gaps = 3/454 (0%)
 Strand = Plus / Plus

                                                                        
Query: 15   ttactatcagcttcactccaaatcttatctgcatgaaacgtggcatgcaatctactatgt 74
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 989  ttactatcagcttcactccaaatcttatctgcatgaaacgtgggatgcaatctactatgt 1048

                                                                        
Query: 75   ttgttgaaatggcacctggnagtgactgtcagtgatttgtatcagcatctgaagtctact 134
            ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 1049 ttgttgaaatggcacctgg-agtgactgtcagtgatttgtatcagcatctcaagtctact 1107

                                                                        
Query: 135  tatgagggtgaagaatttgtgaagttgttaaatgacagcaatgttcctcacacacgccat 194
            |||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct: 1108 tatgagggtgaagaatttgtcaagctgttaaatggcagcaatgttcctcacacacgccat 1167

                                                                        
Query: 195  gttgttggatcgaattactgcttcatgaatgtcttcgaggacagaattcccggaagggcc 254
            ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 1168 gttgttggatcaaattactgcttcatgaatgtcttcgaggacagaattcctggaagggca 1227

                                                                        
Query: 255  atcatcatctctgtcatagacaatcttgtgaagggggcatctggccaggccgtgcagaac 314
            ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1228 atcatcatctctgtcatagacaatcttgtaaagggagcatctggccaggccgtgcagaac 1287

                                                                        
Query: 315  ctcaatctgatgatgggactgcctgagaacatgggactgcaatatcagcccctatttcct 374
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1288 ctcaatctgatgatgggactgcctgagaacatggggctgcaatatcagcccctatttcct 1347

                                                                        
Query: 375  tgata--ttgtgcctttgttgtgttctgtctcgatgatgctttggagttaagcacccatc 432
            |||||  |||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 1348 tgatatgttgtgcctttgttgtgctctttctcgatgatgctttggagttaagcacccatc 1407

                                              
Query: 433  tctgttttccattgagaagcaaagagctgaatgt 466
            |||||||||| |||||||||||||||||||||||
Sbjct: 1408 tctgttttccgttgagaagcaaagagctgaatgt 1441
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>ref|NM_197149.1| Oryza sativa (japonica cultivar-group) putative
            N-acetyl-gamma-glutamyl-phosphate reductase
            (OSJNBa0041P03.17), mRNA
          Length = 1251

 Score =  414 bits (209), Expect = e-112
 Identities = 321/357 (89%), Gaps = 1/357 (0%)
 Strand = Plus / Plus

                                                                        
Query: 17   actatcagcttcactccaaatcttatctgcatgaaacgtggcatgcaatctactatgttt 76
            |||||||| || ||||||||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 892  actatcagttttactccaaatctgatctgtatgaaacgtggaatgcaatctaccatgttt 951

                                                                        
Query: 77   gttgaaatggcacctggnagtgactgtcagtgatttgtatcagcatctgaagtctactta 136
            ||||||||||||||||| |||||||| | |||||||||| |||||||| |||||||||||
Sbjct: 952  gttgaaatggcacctgg-agtgactgccggtgatttgtaccagcatctcaagtctactta 1010

                                                                        
Query: 137  tgagggtgaagaatttgtgaagttgttaaatgacagcaatgttcctcacacacgccatgt 196
            |||||| ||||| ||||| ||| | ||| ||| ||||| |||||||||||| ||||||||
Sbjct: 1011 tgagggcgaagagtttgtcaagcttttacatggcagcactgttcctcacacgcgccatgt 1070

                                                                        
Query: 197  tgttggatcgaattactgcttcatgaatgtcttcgaggacagaattcccggaagggccat 256
             || ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 1071 cgtgggatcaaattactgcttcatgaatgtcttcgaggacaggattcctggaagggccat 1130

                                                                        
Query: 257  catcatctctgtcatagacaatcttgtgaagggggcatctggccaggccgtgcagaacct 316
            |||||||||||| ||||| |||||||||||||| || ||||| ||||| || ||||||||
Sbjct: 1131 catcatctctgttatagataatcttgtgaagggagcgtctggtcaggctgtccagaacct 1190

                                                                     
Query: 317  caatctgatgatgggactgcctgagaacatgggactgcaatatcagcccctatttcc 373
            ||||||||||||||| |||||||||||||  || |||||||||||||||||||||||
Sbjct: 1191 caatctgatgatgggcctgcctgagaacagagggctgcaatatcagcccctatttcc 1247
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>dbj|AK071544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100D05, full
            insert sequence
          Length = 1901

 Score =  408 bits (206), Expect = e-111
 Identities = 324/362 (89%), Gaps = 1/362 (0%)
 Strand = Plus / Plus

                                                                        
Query: 17   actatcagcttcactccaaatcttatctgcatgaaacgtggcatgcaatctactatgttt 76
            ||||||||||| ||||||||||| || || ||||||||||| ||||||||||||||||| 
Sbjct: 1152 actatcagctttactccaaatctgatttgtatgaaacgtgggatgcaatctactatgttc 1211

                                                                        
Query: 77   gttgaaatggcacctggnagtgactgtcagtgatttgtatcagcatctgaagtctactta 136
            ||||||||||||||||| |||||||| || |||||||||||||||||| |||||||| ||
Sbjct: 1212 gttgaaatggcacctgg-agtgactgccaatgatttgtatcagcatctcaagtctacata 1270

                                                                        
Query: 137  tgagggtgaagaatttgtgaagttgttaaatgacagcaatgttcctcacacacgccatgt 196
            |||||||||||||||||||||  |||||||||  ||||  ||||||||||||||||||||
Sbjct: 1271 tgagggtgaagaatttgtgaaactgttaaatggtagcagcgttcctcacacacgccatgt 1330

                                                                        
Query: 197  tgttggatcgaattactgcttcatgaatgtcttcgaggacagaattcccggaagggccat 256
            ||| ||||| ||||||||||||||||||||||| |||||||||||||| ||| | |||||
Sbjct: 1331 tgtgggatcaaattactgcttcatgaatgtctttgaggacagaattcctggacgtgccat 1390

                                                                        
Query: 257  catcatctctgtcatagacaatcttgtgaagggggcatctggccaggccgtgcagaacct 316
            |||||| ||||| ||||| |||||||||||||| ||||| || ||||| || ||||||||
Sbjct: 1391 catcatatctgttatagataatcttgtgaagggagcatcaggtcaggctgttcagaacct 1450

                                                                        
Query: 317  caatctgatgatgggactgcctgagaacatgggactgcaatatcagcccctatttccttg 376
             |||||||||||||| ||||| |||||||  || ||||||||||| ||||||||||||||
Sbjct: 1451 taatctgatgatgggtctgccagagaacactgggctgcaatatcaacccctatttccttg 1510

              
Query: 377  at 378
            ||
Sbjct: 1511 at 1512
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>gb|AY108206.1| Zea mays PCO093732 mRNA sequence
          Length = 1830

 Score =  317 bits (160), Expect = 2e-83
 Identities = 314/364 (86%), Gaps = 1/364 (0%)
 Strand = Plus / Plus

                                                                        
Query: 15   ttactatcagcttcactccaaatcttatctgcatgaaacgtggcatgcaatctactatgt 74
            ||||||||||||| |||||| || | || || ||||||||||| |||||||||||| |||
Sbjct: 1135 ttactatcagctttactccacatttgatgtgtatgaaacgtgggatgcaatctactgtgt 1194

                                                                        
Query: 75   ttgttgaaatggcacctggnagtgactgtcagtgatttgtatcagcatctgaagtctact 134
             ||||||| ||||| |||| |||||||  ||| ||||||||| | || || |||||||||
Sbjct: 1195 atgttgaattggcatctgg-agtgactcccagggatttgtatgaacacctaaagtctact 1253

                                                                        
Query: 135  tatgagggtgaagaatttgtgaagttgttaaatgacagcaatgttcctcacacacgccat 194
            || |||  |||||||||||| ||| ||||| |||  ||||||||||||  |||| |||||
Sbjct: 1254 tacgagaatgaagaatttgtcaagctgttacatggtagcaatgttccttgcacaagccat 1313

                                                                        
Query: 195  gttgttggatcgaattactgcttcatgaatgtcttcgaggacagaattcccggaagggcc 254
            ||||| ||||| ||||||||||||||||||||||  ||||| ||||| || |||||||||
Sbjct: 1314 gttgtgggatcaaattactgcttcatgaatgtctatgaggatagaatacctggaagggcc 1373

                                                                        
Query: 255  atcatcatctctgtcatagacaatcttgtgaagggggcatctggccaggccgtgcagaac 314
            |||||||||||||||||||| |||||||||||||| |||||||| |||||  |||| || 
Sbjct: 1374 atcatcatctctgtcatagataatcttgtgaagggagcatctggtcaggctttgcaaaat 1433

                                                                        
Query: 315  ctcaatctgatgatgggactgcctgagaacatgggactgcaatatcagcccctatttcct 374
            || |||||||||||||||||||||||||| ||||| |||||||| |||||||| || |||
Sbjct: 1434 cttaatctgatgatgggactgcctgagaatatggggctgcaataccagcccctgttccct 1493

                
Query: 375  tgat 378
            ||||
Sbjct: 1494 tgat 1497
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>gb|BT017894.1| Zea mays clone EL01N0515C03.c mRNA sequence
          Length = 1436

 Score =  285 bits (144), Expect = 6e-74
 Identities = 310/364 (85%), Gaps = 1/364 (0%)
 Strand = Plus / Plus

                                                                        
Query: 15   ttactatcagcttcactccaaatcttatctgcatgaaacgtggcatgcaatctactatgt 74
            ||||||||||||| |||||| || | || || ||||||||||| |||||||||||| |||
Sbjct: 696  ttactatcagctttactccacatttgatgtgtatgaaacgtgggatgcaatctactgtgt 755

                                                                        
Query: 75   ttgttgaaatggcacctggnagtgactgtcagtgatttgtatcagcatctgaagtctact 134
             ||||||| ||||| |||| |||||||  ||| ||||||||| | || || |||||||||
Sbjct: 756  atgttgaattggcatctgg-agtgactcccagggatttgtatgaacacctaaagtctact 814

                                                                        
Query: 135  tatgagggtgaagaatttgtgaagttgttaaatgacagcaatgttcctcacacacgccat 194
            || |||  ||||||| |||| ||| ||||| |||  ||||||||||||  |||| |||||
Sbjct: 815  tacgagaatgaagaaattgtcaagctgttacatggtagcaatgttccttgcacaagccat 874

                                                                        
Query: 195  gttgttggatcgaattactgcttcatgaatgtcttcgaggacagaattcccggaagggcc 254
            ||||  ||||| ||||||||||||||||||||||  ||||| ||||| || |||||||||
Sbjct: 875  gttgggggatcaaattactgcttcatgaatgtctatgaggatagaatacctggaagggcc 934

                                                                        
Query: 255  atcatcatctctgtcatagacaatcttgtgaagggggcatctggccaggccgtgcagaac 314
            |||||||||||||||||||| |||||||||||||| |||||||| |||||  |||| || 
Sbjct: 935  atcatcatctctgtcatagataatcttgtgaagggagcatctggtcaggctttgcaaaat 994

                                                                        
Query: 315  ctcaatctgatgatgggactgcctgagaacatgggactgcaatatcagcccctatttcct 374
            || ||| ||||||||||||||||| |||| ||||| |||||||| |||||||| || |||
Sbjct: 995  cttaatttgatgatgggactgcctaagaatatggggctgcaataccagcccctgttccct 1054

                
Query: 375  tgat 378
            ||||
Sbjct: 1055 tgat 1058
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>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete
             sequence
          Length = 154558

 Score =  155 bits (78), Expect = 2e-34
 Identities = 117/130 (90%)
 Strand = Plus / Minus

                                                                         
Query: 139   agggtgaagaatttgtgaagttgttaaatgacagcaatgttcctcacacacgccatgttg 198
             |||||||||||||||||||  |||||||||  ||||  ||||||||||||||||||||||
Sbjct: 82901 agggtgaagaatttgtgaaactgttaaatggtagcagcgttcctcacacacgccatgttg 82842

                                                                         
Query: 199   ttggatcgaattactgcttcatgaatgtcttcgaggacagaattcccggaagggccatca 258
             | ||||| ||||||||||||||||||||||| |||||||||||||| ||| | |||||||
Sbjct: 82841 tgggatcaaattactgcttcatgaatgtctttgaggacagaattcctggacgtgccatca 82782

                       
Query: 259   tcatctctgt 268
             |||| |||||
Sbjct: 82781 tcatatctgt 82772



 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/93 (92%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                         
Query: 49    gaaacgtggcatgcaatctactatgtttgttgaaatggcacctggnagtgactgtcagtg 108
             ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 83163 gaaacgtgggatgcaatctactatgttcgttgaaatggcacctgg-agtgactgccaatg 83105

                                              
Query: 109   atttgtatcagcatctgaagtctacttatgagg 141
             |||||||||||||||| |||||||| |||||||
Sbjct: 83104 atttgtatcagcatctcaagtctacatatgagg 83072



 Score =  113 bits (57), Expect = 5e-22
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                         
Query: 270   atagacaatcttgtgaagggggcatctggccaggccgtgcagaacctcaatctgatgatg 329
             ||||| |||||||||||||| ||||| || ||||| || |||||||| ||||||||||||
Sbjct: 82674 atagataatcttgtgaagggagcatcaggtcaggctgttcagaaccttaatctgatgatg 82615

                                                              
Query: 330   ggactgcctgagaacatgggactgcaatatcagcccctatttccttgat 378
             || ||||| |||||||  || ||||||||||| ||||||||||||||||
Sbjct: 82614 ggtctgccagagaacactgggctgcaatatcaacccctatttccttgat 82566
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  155 bits (78), Expect = 2e-34
 Identities = 117/130 (90%)
 Strand = Plus / Minus

                                                                            
Query: 139      agggtgaagaatttgtgaagttgttaaatgacagcaatgttcctcacacacgccatgttg 198
                |||||||||||||||||||  |||||||||  ||||  ||||||||||||||||||||||
Sbjct: 23246420 agggtgaagaatttgtgaaactgttaaatggtagcagcgttcctcacacacgccatgttg 23246361

                                                                            
Query: 199      ttggatcgaattactgcttcatgaatgtcttcgaggacagaattcccggaagggccatca 258
                | ||||| ||||||||||||||||||||||| |||||||||||||| ||| | |||||||
Sbjct: 23246360 tgggatcaaattactgcttcatgaatgtctttgaggacagaattcctggacgtgccatca 23246301

                          
Query: 259      tcatctctgt 268
                |||| |||||
Sbjct: 23246300 tcatatctgt 23246291



 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/93 (92%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                            
Query: 49       gaaacgtggcatgcaatctactatgtttgttgaaatggcacctggnagtgactgtcagtg 108
                ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 23246682 gaaacgtgggatgcaatctactatgttcgttgaaatggcacctgg-agtgactgccaatg 23246624

                                                 
Query: 109      atttgtatcagcatctgaagtctacttatgagg 141
                |||||||||||||||| |||||||| |||||||
Sbjct: 23246623 atttgtatcagcatctcaagtctacatatgagg 23246591



 Score =  113 bits (57), Expect = 5e-22
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                            
Query: 270      atagacaatcttgtgaagggggcatctggccaggccgtgcagaacctcaatctgatgatg 329
                ||||| |||||||||||||| ||||| || ||||| || |||||||| ||||||||||||
Sbjct: 23246193 atagataatcttgtgaagggagcatcaggtcaggctgttcagaaccttaatctgatgatg 23246134

                                                                 
Query: 330      ggactgcctgagaacatgggactgcaatatcagcccctatttccttgat 378
                || ||||| |||||||  || ||||||||||| ||||||||||||||||
Sbjct: 23246133 ggtctgccagagaacactgggctgcaatatcaacccctatttccttgat 23246085
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  155 bits (78), Expect = 2e-34
 Identities = 117/130 (90%)
 Strand = Plus / Minus

                                                                            
Query: 139      agggtgaagaatttgtgaagttgttaaatgacagcaatgttcctcacacacgccatgttg 198
                |||||||||||||||||||  |||||||||  ||||  ||||||||||||||||||||||
Sbjct: 23239448 agggtgaagaatttgtgaaactgttaaatggtagcagcgttcctcacacacgccatgttg 23239389

                                                                            
Query: 199      ttggatcgaattactgcttcatgaatgtcttcgaggacagaattcccggaagggccatca 258
                | ||||| ||||||||||||||||||||||| |||||||||||||| ||| | |||||||
Sbjct: 23239388 tgggatcaaattactgcttcatgaatgtctttgaggacagaattcctggacgtgccatca 23239329

                          
Query: 259      tcatctctgt 268
                |||| |||||
Sbjct: 23239328 tcatatctgt 23239319



 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/93 (92%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                            
Query: 49       gaaacgtggcatgcaatctactatgtttgttgaaatggcacctggnagtgactgtcagtg 108
                ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 23239710 gaaacgtgggatgcaatctactatgttcgttgaaatggcacctgg-agtgactgccaatg 23239652

                                                 
Query: 109      atttgtatcagcatctgaagtctacttatgagg 141
                |||||||||||||||| |||||||| |||||||
Sbjct: 23239651 atttgtatcagcatctcaagtctacatatgagg 23239619



 Score =  113 bits (57), Expect = 5e-22
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                            
Query: 270      atagacaatcttgtgaagggggcatctggccaggccgtgcagaacctcaatctgatgatg 329
                ||||| |||||||||||||| ||||| || ||||| || |||||||| ||||||||||||
Sbjct: 23239221 atagataatcttgtgaagggagcatcaggtcaggctgttcagaaccttaatctgatgatg 23239162

                                                                 
Query: 330      ggactgcctgagaacatgggactgcaatatcagcccctatttccttgat 378
                || ||||| |||||||  || ||||||||||| ||||||||||||||||
Sbjct: 23239161 ggtctgccagagaacactgggctgcaatatcaacccctatttccttgat 23239113
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>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete
             sequence
          Length = 139614

 Score =  147 bits (74), Expect = 4e-32
 Identities = 116/130 (89%)
 Strand = Plus / Minus

                                                                         
Query: 139   agggtgaagaatttgtgaagttgttaaatgacagcaatgttcctcacacacgccatgttg 198
             |||| ||||| ||||| ||| | ||| ||| ||||| |||||||||||| |||||||| |
Sbjct: 89553 agggcgaagagtttgtcaagcttttacatggcagcactgttcctcacacgcgccatgtcg 89494

                                                                         
Query: 199   ttggatcgaattactgcttcatgaatgtcttcgaggacagaattcccggaagggccatca 258
             | ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 89493 tgggatcaaattactgcttcatgaatgtcttcgaggacaggattcctggaagggccatca 89434

                       
Query: 259   tcatctctgt 268
             ||||||||||
Sbjct: 89433 tcatctctgt 89424



 Score =  129 bits (65), Expect = 9e-27
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                         
Query: 270   atagacaatcttgtgaagggggcatctggccaggccgtgcagaacctcaatctgatgatg 329
             ||||| |||||||||||||| || ||||| ||||| || |||||||||||||||||||||
Sbjct: 89326 atagataatcttgtgaagggagcgtctggtcaggctgtccagaacctcaatctgatgatg 89267

                                                              
Query: 330   ggactgcctgagaacatgggactgcaatatcagcccctatttccttgat 378
             || |||||||||||||  || ||||||||||||||||||||||| ||||
Sbjct: 89266 ggcctgcctgagaacagagggctgcaatatcagcccctatttccatgat 89218



 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/93 (92%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                         
Query: 49    gaaacgtggcatgcaatctactatgtttgttgaaatggcacctggnagtgactgtcagtg 108
             ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| | |||
Sbjct: 89806 gaaacgtggaatgcaatctaccatgtttgttgaaatggcacctgg-agtgactgccggtg 89748

                                              
Query: 109   atttgtatcagcatctgaagtctacttatgagg 141
             ||||||| |||||||| ||||||||||||||||
Sbjct: 89747 atttgtaccagcatctcaagtctacttatgagg 89715
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  147 bits (74), Expect = 4e-32
 Identities = 116/130 (89%)
 Strand = Plus / Plus

                                                                            
Query: 139      agggtgaagaatttgtgaagttgttaaatgacagcaatgttcctcacacacgccatgttg 198
                |||| ||||| ||||| ||| | ||| ||| ||||| |||||||||||| |||||||| |
Sbjct: 18261617 agggcgaagagtttgtcaagcttttacatggcagcactgttcctcacacgcgccatgtcg 18261676

                                                                            
Query: 199      ttggatcgaattactgcttcatgaatgtcttcgaggacagaattcccggaagggccatca 258
                | ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 18261677 tgggatcaaattactgcttcatgaatgtcttcgaggacaggattcctggaagggccatca 18261736

                          
Query: 259      tcatctctgt 268
                ||||||||||
Sbjct: 18261737 tcatctctgt 18261746



 Score =  129 bits (65), Expect = 9e-27
 Identities = 98/109 (89%)
 Strand = Plus / Plus

                                                                            
Query: 270      atagacaatcttgtgaagggggcatctggccaggccgtgcagaacctcaatctgatgatg 329
                ||||| |||||||||||||| || ||||| ||||| || |||||||||||||||||||||
Sbjct: 18261844 atagataatcttgtgaagggagcgtctggtcaggctgtccagaacctcaatctgatgatg 18261903

                                                                 
Query: 330      ggactgcctgagaacatgggactgcaatatcagcccctatttccttgat 378
                || |||||||||||||  || ||||||||||||||||||||||| ||||
Sbjct: 18261904 ggcctgcctgagaacagagggctgcaatatcagcccctatttccatgat 18261952



 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/93 (92%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                            
Query: 49       gaaacgtggcatgcaatctactatgtttgttgaaatggcacctggnagtgactgtcagtg 108
                ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| | |||
Sbjct: 18261364 gaaacgtggaatgcaatctaccatgtttgttgaaatggcacctgg-agtgactgccggtg 18261422

                                                 
Query: 109      atttgtatcagcatctgaagtctacttatgagg 141
                ||||||| |||||||| ||||||||||||||||
Sbjct: 18261423 atttgtaccagcatctcaagtctacttatgagg 18261455
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  147 bits (74), Expect = 4e-32
 Identities = 116/130 (89%)
 Strand = Plus / Plus

                                                                            
Query: 139      agggtgaagaatttgtgaagttgttaaatgacagcaatgttcctcacacacgccatgttg 198
                |||| ||||| ||||| ||| | ||| ||| ||||| |||||||||||| |||||||| |
Sbjct: 18270870 agggcgaagagtttgtcaagcttttacatggcagcactgttcctcacacgcgccatgtcg 18270929

                                                                            
Query: 199      ttggatcgaattactgcttcatgaatgtcttcgaggacagaattcccggaagggccatca 258
                | ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 18270930 tgggatcaaattactgcttcatgaatgtcttcgaggacaggattcctggaagggccatca 18270989

                          
Query: 259      tcatctctgt 268
                ||||||||||
Sbjct: 18270990 tcatctctgt 18270999



 Score =  129 bits (65), Expect = 9e-27
 Identities = 98/109 (89%)
 Strand = Plus / Plus

                                                                            
Query: 270      atagacaatcttgtgaagggggcatctggccaggccgtgcagaacctcaatctgatgatg 329
                ||||| |||||||||||||| || ||||| ||||| || |||||||||||||||||||||
Sbjct: 18271097 atagataatcttgtgaagggagcgtctggtcaggctgtccagaacctcaatctgatgatg 18271156

                                                                 
Query: 330      ggactgcctgagaacatgggactgcaatatcagcccctatttccttgat 378
                || |||||||||||||  || ||||||||||||||||||||||| ||||
Sbjct: 18271157 ggcctgcctgagaacagagggctgcaatatcagcccctatttccatgat 18271205



 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/93 (92%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                            
Query: 49       gaaacgtggcatgcaatctactatgtttgttgaaatggcacctggnagtgactgtcagtg 108
                ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| | |||
Sbjct: 18270617 gaaacgtggaatgcaatctaccatgtttgttgaaatggcacctgg-agtgactgccggtg 18270675

                                                 
Query: 109      atttgtatcagcatctgaagtctacttatgagg 141
                ||||||| |||||||| ||||||||||||||||
Sbjct: 18270676 atttgtaccagcatctcaagtctacttatgagg 18270708
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                            
Query: 298     gccaggccgtgcagaacctcaatctgatgatgggactgcctgaga 342
               |||||||||| |||||||||||||  ||| |||||||||| ||||
Sbjct: 2749067 gccaggccgtccagaacctcaatcgcatgctgggactgccggaga 2749111
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                     
Query: 267     gtcatagacaatcttgtgaagggggcatctggccaggccgtgcagaacctcaat 320
               ||||| ||||| || || ||||| || || |||||||| |||||||||||||||
Sbjct: 6393131 gtcatcgacaacctggtcaagggcgcttcgggccaggcggtgcagaacctcaat 6393078
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>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome
          Length = 1751377

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                            
Query: 269    catagacaatcttgtgaagggggcatctggccaggccgtgcagaac 314
              ||||||||| ||||||||||| ||||| || |||||| | ||||||
Sbjct: 769590 catagacaaccttgtgaagggcgcatccggtcaggccatccagaac 769635
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 297     ggccaggccgtgcagaacctcaatctgatg 326
               |||||||| ||||||||||| |||||||||
Sbjct: 3994439 ggccaggcggtgcagaacctgaatctgatg 3994410
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>emb|AL354833.9| Human DNA sequence from clone RP11-157L14 on chromosome 13 Contains an
              olfactory receptor pseudogene,  a novel gene (RGC32), the
              3' end of a novel gene (contains KIAA0564 and FLJ21779)
              possible ortholog of RIKEN cDNA 1300010F03 gene, and 2 CpG
              islands, complete sequence
          Length = 158871

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 368    atttccttgatattgtgcctttgttgtgt 396
              |||||||||||||||| ||||| ||||||
Sbjct: 144349 atttccttgatattgttccttttttgtgt 144377
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>emb|AL080274.21|HS1012F16 Human DNA sequence from clone RP5-1012F16 on chromosome 20 Contains a
             novel gene, ESTs, STSs and GSSs, complete sequence
          Length = 74539

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 433   tctgttttccattgagaagca 453
             |||||||||||||||||||||
Sbjct: 61190 tctgttttccattgagaagca 61210
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>gb|AC147383.4| Pan troglodytes BAC clone RP43-157C2 from 7, complete sequence
          Length = 190266

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    gccatcatcatctctgtcat 271
              ||||||||||||||||||||
Sbjct: 125884 gccatcatcatctctgtcat 125865
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>gb|AC002540.1| Homo sapiens BAC clone GS1-25M2 from 7, complete sequence
          Length = 70851

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   gccatcatcatctctgtcat 271
             ||||||||||||||||||||
Sbjct: 46911 gccatcatcatctctgtcat 46892
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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 300    caggccgtgcagaacctcaa 319
              ||||||||||||||||||||
Sbjct: 162051 caggccgtgcagaacctcaa 162032
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>emb|AJ009897.1|TNAJ9897 Thermotoga neapolitana argC, argJ genes and partial argH, argB genes
          Length = 3250

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 269  catagacaatcttgtgaagggggcatctggccaggc 304
            ||||||||| || |||||||||||||| || |||||
Sbjct: 1765 catagacaacctcgtgaagggggcatcgggtcaggc 1800
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>gb|AC108487.2| Homo sapiens chromosome 3 clone RP11-733E24, complete sequence
          Length = 180925

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    tatttccttgatattgtgcc 386
              ||||||||||||||||||||
Sbjct: 136578 tatttccttgatattgtgcc 136559
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>gb|AC025946.9| Homo sapiens chromosome 10 clone RP11-543F8, complete sequence
          Length = 197191

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 305    cgtgcagaacctcaatctga 324
              ||||||||||||||||||||
Sbjct: 102652 cgtgcagaacctcaatctga 102671
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>gb|AC152954.1| Mus musculus 6 BAC RP23-296N5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203474

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 431    tctctgttttccattgagaagcaa 454
              |||||| |||||||||||||||||
Sbjct: 119900 tctctgctttccattgagaagcaa 119877
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>gb|AC006986.3|AC006986 Homo sapiens BAC clone RP11-155J5 from Y, complete sequence
          Length = 173957

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 321    ctgatgatgggactgcctga 340
              ||||||||||||||||||||
Sbjct: 146938 ctgatgatgggactgcctga 146957
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>gb|AC025812.11|AC025812 Homo sapiens chromosome 3 clone RP11-182G24, complete sequence
          Length = 149006

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   tatttccttgatattgtgcc 386
             ||||||||||||||||||||
Sbjct: 76027 tatttccttgatattgtgcc 76008
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>gb|AC087653.6| Homo sapiens chromosome 11, clone RP1-259N9, complete sequence
          Length = 138141

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 251    ggccatcatcatctctgtcataga 274
              ||||||||||| ||||||||||||
Sbjct: 120032 ggccatcatcacctctgtcataga 120009
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>gb|AC011286.7| Homo sapiens BAC clone RP11-4H21 from 2, complete sequence
          Length = 168863

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     tttgttgaaatggcacctgg 93
              ||||||||||||||||||||
Sbjct: 117131 tttgttgaaatggcacctgg 117112
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 300     caggccgtgcagaacctcaatctgatgatggg 331
               ||||| |||||||||||||| |||||| ||||
Sbjct: 1141683 caggcggtgcagaacctcaacctgatgctggg 1141652
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>gb|AF152365.1|AF152365 Homo sapiens constitutive fragile region FRA3B sequence
          Length = 246546

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    tatttccttgatattgtgcc 386
              ||||||||||||||||||||
Sbjct: 110185 tatttccttgatattgtgcc 110166
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>gb|AF115103.1|AF115103 Streptococcus thermophilus bacteriophage Sfi21, complete genome
          Length = 40739

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   gaatttgtgaagttgttaaa 166
             ||||||||||||||||||||
Sbjct: 38097 gaatttgtgaagttgttaaa 38116
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>emb|BX005050.6| Zebrafish DNA sequence from clone CH211-11A11, complete sequence
          Length = 166695

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   gagaagcaaagagctgaatg 465
             ||||||||||||||||||||
Sbjct: 26731 gagaagcaaagagctgaatg 26750


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,279,645
Number of Sequences: 3902068
Number of extensions: 4279645
Number of successful extensions: 76379
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76177
Number of HSP's gapped (non-prelim): 190
length of query: 469
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 447
effective length of database: 17,147,199,772
effective search space: 7664798298084
effective search space used: 7664798298084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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