ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags30o06 |
|---|---|
| Clone Library Name | barley_pub |
>AMY1_DROAN (Q23835) Alpha-amylase 1 precursor (EC 3.2.1.1)| Length = 494 Score = 34.7 bits (78), Expect = 0.28 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +1 Query: 283 EQFSSPSFCQDQNCCS*W*LQHR**RLLDIGEFQQAYRSSTGQNW 417 + +SPSF D +C W +HR ++ ++ +F+ A S QNW Sbjct: 363 QNIASPSFNSDNSCSGGWVCEHRWRQIYNMVDFRNAVGSDAIQNW 407
>AMYR_DROWI (O76263) Alpha-amylase-related protein precursor (EC 3.2.1.1)| Length = 492 Score = 34.3 bits (77), Expect = 0.37 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +1 Query: 271 QPTREQFSSPSFCQDQNCCS*W*LQHR**RLLDIGEFQQAYRSSTGQNW 417 Q +EQ SP F D C + W +HR ++ ++ EF+ R + NW Sbjct: 357 QDAQEQLISPEFDADGGCTNGWICEHRWRQIYNMVEFKNTVRDTELTNW 405
>NOSZ2_PSEAE (Q01710) Nitrous-oxide reductase precursor (EC 1.7.99.6) (N(2)OR)| (N2O reductase) Length = 634 Score = 33.9 bits (76), Expect = 0.48 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = +2 Query: 341 FNIDNEDCWTLENFSRHIVRPRDKIGAVLTGEL---EVSLKNGKADLRDATFIDNSKFTR 511 FN+D+ W L N SRHI+ K L G+ +S+ +GK D + FI++ +R Sbjct: 95 FNVDSATGWGLTNESRHILGDTAKF---LNGDCHHPHISMTDGKYDGK-YLFINDKANSR 150 Query: 512 SGKFRLGVMVVD 547 + RL +M D Sbjct: 151 VARIRLDIMKCD 162
>NOSZ_PSEST (P19573) Nitrous-oxide reductase precursor (EC 1.7.99.6) (N(2)OR)| (N2O reductase) Length = 638 Score = 33.9 bits (76), Expect = 0.48 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = +2 Query: 341 FNIDNEDCWTLENFSRHIVRPRDKIGAVLTGEL---EVSLKNGKADLRDATFIDNSKFTR 511 FN+D+ W L N SRHI+ K L G+ +S+ +GK D + FI++ +R Sbjct: 99 FNVDSATGWGLTNESRHIMGDSAKF---LNGDCHHPHISMTDGKYDGK-YLFINDKANSR 154 Query: 512 SGKFRLGVMVVD 547 + RL +M D Sbjct: 155 VARIRLDIMKCD 166
>GCVK_HHV6U (P24446) Probable ganciclovir kinase (EC 2.7.1.-)| Length = 562 Score = 33.5 bits (75), Expect = 0.63 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = +2 Query: 458 GKADLRDATFIDNSKFTRSGKFRLGVMVVDG--LGERILEGITEPFTV 595 G DL +ATF++NSK TR R G+ + GE++L + E F + Sbjct: 499 GSRDLFEATFLNNSKLTRRQPIREGLASLQSSEYGEKLLHDLRELFLI 546
>FLIA_SALTY (P0A2E8) RNA polymerase sigma factor for flagellar operon (Sigma-F| factor) (Sigma-27) (Sigma-28) Length = 239 Score = 33.1 bits (74), Expect = 0.82 Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 1/100 (1%) Frame = +2 Query: 170 YKLRFLNGLSNEVFTKKEIRCANGDPLKICLEDNNQQENNSRRLLSAKIKIVVLDGDFNI 349 Y+ L+ ++++F+ E R +GD +++ E++ QQEN +LL ++ V+D ++ Sbjct: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTEEH-QQENPLHQLLEGDLRQRVMDAIESL 189 Query: 350 DNEDCWTLENFSRHIVRPRDKIGAVL-TGELEVSLKNGKA 466 + L + + + ++ IGAVL GE VS + +A Sbjct: 190 PEREQLVLTLYYQEELNLKE-IGAVLEVGESRVSQLHSQA 228
>FLIA_SALTI (P0A2E9) RNA polymerase sigma factor for flagellar operon (Sigma-F| factor) (Sigma-27) (Sigma-28) Length = 239 Score = 33.1 bits (74), Expect = 0.82 Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 1/100 (1%) Frame = +2 Query: 170 YKLRFLNGLSNEVFTKKEIRCANGDPLKICLEDNNQQENNSRRLLSAKIKIVVLDGDFNI 349 Y+ L+ ++++F+ E R +GD +++ E++ QQEN +LL ++ V+D ++ Sbjct: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTEEH-QQENPLHQLLEGDLRQRVMDAIESL 189 Query: 350 DNEDCWTLENFSRHIVRPRDKIGAVL-TGELEVSLKNGKA 466 + L + + + ++ IGAVL GE VS + +A Sbjct: 190 PEREQLVLTLYYQEELNLKE-IGAVLEVGESRVSQLHSQA 228
>AMYR_DROSU (O18420) Alpha-amylase-related protein precursor (EC 3.2.1.1)| Length = 494 Score = 33.1 bits (74), Expect = 0.82 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +1 Query: 259 SGGQQPTREQFSSPSFCQDQNCCS*W*LQHR**RLLDIGEFQQAYRSSTGQNW 417 S Q +EQ SP F D C + W +HR ++ ++ F+ A R + NW Sbjct: 355 SAPPQNAQEQLISPEFDSDGACVNGWICEHRWRQIYNMVGFKNAVRDTPVTNW 407
>AMYR_DROPS (O18552) Alpha-amylase-related protein precursor (EC 3.2.1.1)| Length = 494 Score = 33.1 bits (74), Expect = 0.82 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +1 Query: 259 SGGQQPTREQFSSPSFCQDQNCCS*W*LQHR**RLLDIGEFQQAYRSSTGQNW 417 S Q +E+ SP F D C + W +HR ++ ++ F+ A R + NW Sbjct: 355 SAPPQDAQEELISPEFDADGGCANGWICEHRWRQIYNMVGFKNAVRDTEISNW 407
>AMY2_DROAN (O18345) Alpha-amylase 2 precursor (EC 3.2.1.1)| Length = 494 Score = 33.1 bits (74), Expect = 0.82 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = +1 Query: 283 EQFSSPSFCQDQNCCS*W*LQHR**RLLDIGEFQQAYRSSTGQNW 417 + +SPSF D +C W +HR ++ ++ F+ A S QNW Sbjct: 363 QNIASPSFNSDNSCSGGWVCEHRWKQIYNMVGFRNAVGSDAIQNW 407
>TOLB_GLUOX (Q5FQB9) Protein tolB precursor| Length = 453 Score = 32.0 bits (71), Expect = 1.8 Identities = 21/33 (63%), Positives = 22/33 (66%), Gaps = 2/33 (6%) Frame = +2 Query: 503 FTR--SGKFRLGVMVVDGLGERILEGITEPFTV 595 FTR SG F LGVM DG GERIL T+ FTV Sbjct: 364 FTRIGSGGFSLGVMNPDGTGERIL---TQGFTV 393
>GCVK_HHV6Z (P52446) Probable ganciclovir kinase (EC 2.7.1.-)| Length = 563 Score = 30.8 bits (68), Expect = 4.1 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Frame = +2 Query: 380 FSRHIVRPRDKIGAVLTGELEVSLKNGKADLRDATFIDNSKFTRSGKFRLGVMVVDG--L 553 F R +V +KI L E L+ DL +ATF++NSK TR R G+ + Sbjct: 478 FYRDVVDIYEKIYDFLDERGEFGLR----DLFEATFLNNSKLTRRQPIRGGLASLQSSEY 533 Query: 554 GERILEGITEPFTV 595 GE++L + F + Sbjct: 534 GEKLLHDLRALFLI 547
>AMYB_DROYA (Q9BN01) Alpha-amylase B precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 494 Score = 30.4 bits (67), Expect = 5.3 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +1 Query: 292 SSPSFCQDQNCCS*W*LQHR**RLLDIGEFQQAYRSSTGQNW 417 +SP F D +C W +HR ++ ++ F+ A S QNW Sbjct: 366 ASPVFNSDNSCSGGWVCEHRWRQIYNMVAFRNAVGSDAIQNW 407
>AMYA_DROYA (P83833) Alpha-amylase A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 494 Score = 30.4 bits (67), Expect = 5.3 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +1 Query: 292 SSPSFCQDQNCCS*W*LQHR**RLLDIGEFQQAYRSSTGQNW 417 +SP F D +C W +HR ++ ++ F+ A S QNW Sbjct: 366 ASPVFNSDNSCSGGWVCEHRWRQIYNMVAFRNAVGSDAIQNW 407
>PMPG_CHLMU (Q9PL45) Probable outer membrane protein pmpG precursor (Polymorphic| membrane protein G) Length = 987 Score = 30.0 bits (66), Expect = 7.0 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%) Frame = +2 Query: 347 IDNEDCWTLENF--SRHIVRPRDKIGAVLTGELEVSLKNGKADLRDAT 484 + +++ WT + F +RH V R + A LTG +EV +GK + RDA+ Sbjct: 928 LSHKETWTTDAFHLARHGVMVRGSMYASLTGNIEV-YGHGKYEYRDAS 974
>IQGA2_HUMAN (Q13576) Ras GTPase-activating-like protein IQGAP2| Length = 1574 Score = 30.0 bits (66), Expect = 7.0 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Frame = +2 Query: 47 QSAIESAISRIPEAVTKAI---TGYLSRAPSLCRTLVDQNQTPRYK 175 ++A+ +A+ I EAV K I T R P+ TLVD N P Y+ Sbjct: 210 EAALHAAVIAINEAVEKGIAEQTVVTLRNPNAVLTLVDDNLAPEYQ 255
>TOLB_AGRT5 (Q8U9L4) Protein tolB precursor| Length = 435 Score = 29.6 bits (65), Expect = 9.1 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = +2 Query: 515 GKFRLGVMVVDGLGERIL 568 GKF +GVM DG GERIL Sbjct: 357 GKFSIGVMKTDGSGERIL 374
>YAE7_YEAST (P39723) Protein YAL047C| Length = 622 Score = 29.6 bits (65), Expect = 9.1 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%) Frame = +2 Query: 227 RCANGDPLKICL-EDNNQQENNSRRLLSAKIKIVVL 331 R ++ DP+K L D+N+ +N + L +AKIKI VL Sbjct: 46 RSSHNDPIKPALMNDSNKVKNLEKELTNAKIKIQVL 81
>Y171_UREPA (Q9PQX2) Hypothetical protein UU171| Length = 199 Score = 29.6 bits (65), Expect = 9.1 Identities = 25/111 (22%), Positives = 52/111 (46%) Frame = +2 Query: 185 LNGLSNEVFTKKEIRCANGDPLKICLEDNNQQENNSRRLLSAKIKIVVLDGDFNIDNEDC 364 LNGL++ + K N + +K + +QQE ++ + A++ ++ + I+ + Sbjct: 68 LNGLASNINYKISKFTLNNNEIKFDFKQEDQQELLNQYIQQAELNTIIDKANKKINIK-- 125 Query: 365 WTLENFSRHIVRPRDKIGAVLTGELEVSLKNGKADLRDATFIDNSKFTRSG 517 L+NFS I+ VLT ++E++ K+G + + N +G Sbjct: 126 --LQNFS--ILNSFQDNQPVLTFDIEINKKDGITQVVHKSLTKNQLLNPNG 172
>FPG_RALSO (Q8Y2D7) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)| (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM) Length = 287 Score = 29.6 bits (65), Expect = 9.1 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 11/95 (11%) Frame = +2 Query: 305 SAKIKIVVLDGDFNIDNEDCWTLENFSRHIVRPRDKIGAV-----------LTGELEVSL 451 SA IK V+L GD + + + E+ R +RP G + + L ++ Sbjct: 169 SAAIKTVLLAGDIVVGVGNIYCSESLFRAGIRPTTAAGRISRPRYAALAEAIRATLADAI 228 Query: 452 KNGKADLRDATFIDNSKFTRSGKFRLGVMVVDGLG 556 G + LRD D +SG F+L +V D G Sbjct: 229 ARGGSTLRDFVGSDG----QSGYFQLDALVYDRAG 259 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,260,058 Number of Sequences: 219361 Number of extensions: 2111639 Number of successful extensions: 5502 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5344 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5501 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
