ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags30o06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102354.1| Oryza sativa (japonica cultivar-group) cDNA clon... 262 1e-66
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 194 3e-46
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 194 3e-46
4emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa... 194 3e-46
5emb|AL133268.15| Human DNA sequence from clone RP3-425P12 on chr... 46 0.15
6gb|AY780645.1| Lactobacillus reuteri CRL1098 cobalamin gene clus... 46 0.15
7dbj|AB009668.1| Homo sapiens gene for CMP-N-acetylneuraminic aci... 46 0.15
8ref|XM_471587.1| Oryza sativa (japonica cultivar-group), predic... 42 2.4
9ref|NM_194879.1| Oryza sativa (japonica cultivar-group) putative... 42 2.4
10ref|NM_195858.1| Oryza sativa (japonica cultivar-group) putative... 42 2.4
11ref|XM_471902.1| Oryza sativa (japonica cultivar-group), predic... 42 2.4
12ref|XM_471920.1| Oryza sativa (japonica cultivar-group), predic... 42 2.4
13gb|AC146338.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
14gb|AC131966.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
15emb|CT025689.6| Mouse DNA sequence from clone RP24-236L7 on chro... 42 2.4
16emb|BX842603.2|OSJN00300 Oryza sativa genomic DNA, chromosome 4,... 42 2.4
17emb|AL731644.4|OSJN00287 Oryza sativa genomic DNA, chromosome 4,... 42 2.4
18emb|AL731643.4|OSJN00284 Oryza sativa genomic DNA, chromosome 4,... 42 2.4
19emb|AL731615.4|OSJN00256 Oryza sativa genomic DNA, chromosome 4,... 42 2.4
20gb|AC119148.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
21gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, c... 42 2.4
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
23dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
24dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
25dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
27dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
28gb|AC092645.2| Homo sapiens BAC clone RP11-399B17 from 2, comple... 42 2.4
29gb|AF546189.1| Contiguous genomic DNA sequence comprising the 19... 42 2.4
30dbj|AP003684.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
31dbj|AP005201.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
32dbj|AP004663.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
33dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
34dbj|AG266840.1| Oryza officinalis DNA, gypsy-type retrotransposo... 42 2.4
35gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
36emb|AL731883.4|CNS08C8N Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.4
37emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.4
38gb|AC161214.4| Mus musculus chromosome 8, clone RP23-78A10, comp... 42 2.4
39gb|AC152960.1| Mus musculus 6 BAC RP23-38B21 (Roswell Park Cance... 40 9.4
40ref|XM_807004.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.4
41gb|AC122358.2| Mus musculus BAC clone RP23-406B6 from chromosome... 40 9.4
42gb|AF527803.1| Homo sapiens cyclin-dependent kinase inhibitor 2A... 40 9.4
43gb|AC118011.9| Mus musculus chromosome 1, clone RP23-453J22, com... 40 9.4
44emb|AL449423.14| Human DNA sequence from clone RP11-149I2 on chr... 40 9.4
45gb|AC098838.3| Genomic sequence for Mus musculus, clone RP23-27N... 40 9.4
46gb|AC018994.7|AC018994 Homo sapiens chromosome 18, clone RP11-61... 40 9.4
47gb|AC000049.11| Homo sapiens Chromosome 9p21 Cosmid Clone c86, c... 40 9.4
48emb|BX649388.7| Zebrafish DNA sequence from clone CH211-225P5 in... 40 9.4
49emb|Y18707.1|DCA18707 Daucus carota Inv*Dc4, Inv*Dc4' (partial) ... 40 9.4
50emb|X75352.1|DCRNAABF D.carota (Nantaise) mRNA for soluble acid ... 40 9.4
51emb|X75351.1|DCRNABF D.carota (Nantaise) mRNA for soluble acid b... 40 9.4
52emb|AL845271.10| Mouse DNA sequence from clone RP23-119O19 on ch... 40 9.4
53dbj|AB060808.1| Homo sapiens gene for p16/CDKN2A, complete cds 40 9.4 
>dbj|AK102354.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091G14, full
           insert sequence
          Length = 2087

 Score =  262 bits (132), Expect = 1e-66
 Identities = 435/536 (81%)
 Strand = Plus / Plus

                                                                       
Query: 155 aaccagactccaagatacaagcttaggttcctgaatggcttgagtaatgaagttttcaca 214
           |||||| ||||||| |||||||||||||||   ||||||||||| |||||||||||||||
Sbjct: 342 aaccagcctccaaggtacaagcttaggttctcaaatggcttgagcaatgaagttttcaca 401

                                                                       
Query: 215 aaaaaggaaatccgttgtgcaaatggtgatcctctcaagatatgtctggaggacaacaac 274
           || || | |||| ||  ||  ||||| ||  |||||||||||| | || | |  ||||||
Sbjct: 402 aagaaaggaatctgtgatgttaatggagagtctctcaagatatctgtgcatgtaaacaac 461

                                                                       
Query: 275 caacaagagaacaattctcgtcgccttctttctgccaagatcaaaattgttgttcttgat 334
           | |||||||  |   || | ||||||||||||||| ||||||| | ||||||||||||||
Sbjct: 462 ccacaagaggcctgctcgcatcgccttctttctgctaagatcagagttgttgttcttgat 521

                                                                       
Query: 335 ggtgacttcaacatagataatgaagattgctggacattggagaatttcagcaggcatatc 394
           |||||||||||||   || || | |  ||||||||||  ||| | ||||| |  || || 
Sbjct: 522 ggtgacttcaacaagaatgatcaggggtgctggacatcagaggagttcagaaaccacata 581

                                                                       
Query: 395 gttcgtccacgggacaaaattggggcagtgctgaccggagagctggaggttagcctaaag 454
           || || ||||| || ||| ||||| | |||||||| |||||||| ||| ||||||| || 
Sbjct: 582 gtgcgcccacgtgataaagttgggactgtgctgactggagagcttgagcttagcctgaaa 641

                                                                       
Query: 455 aatggcaaagctgatctccgtgatgctacatttattgataactccaagttcacgaggagt 514
           |||||  | ||| |  ||| |||||| || ||| |||||||||||||||||| |||||||
Sbjct: 642 aatggagaggcttacatccatgatgccacttttgttgataactccaagttcatgaggagt 701

                                                                       
Query: 515 ggcaagttcaggcttggggtaatggttgttgacgggcttggtgaacggatcctagaaggg 574
           || |||||||| ||||||||||||||| |||| |  || |||||||| || |  ||||| 
Sbjct: 702 ggtaagttcagacttggggtaatggttattgatgatctcggtgaacgtattcaggaaggc 761

                                                                       
Query: 575 ataactgaacctttcacagtaaaggatcgtcgtggagaaggataccaaaagcatgccatt 634
           |||||||||||||||   || ||||||||||| |||||||| | | |||||||||  |||
Sbjct: 762 ataactgaacctttcgttgtgaaggatcgtcgcggagaaggttccaaaaagcatgaaatt 821

                                                                   
Query: 635 ccatcattggatgatgatgtttggcgcctgcagaaaatttcaaaggatggtgtctt 690
           |||||||||||||||||||| ||||||||| |||| || ||||| |||||||||||
Sbjct: 822 ccatcattggatgatgatgtctggcgcctgaagaagatatcaaaagatggtgtctt 877



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 59  gagtctgccatcagccggataccagaagcggtgactaaagcgattacaggctacttaagc 118
           ||||| ||||| |||||||| ||||| | |||||| |||||  ||||| ||| | ||| |
Sbjct: 255 gagtccgccattagccggattccagaggaggtgacaaaagcacttacaagcttcctaatc 314

                      
Query: 119 cgtgctcctag 129
           |||||||||||
Sbjct: 315 cgtgctcctag 325
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  194 bits (98), Expect = 3e-46
 Identities = 386/482 (80%)
 Strand = Plus / Plus

                                                                            
Query: 134      tgcagaacgctggttgaccaaaaccagactccaagatacaagcttaggttcctgaatggc 193
                |||||||| |||  ||| || |||||| ||||||| |||||||||||||||   ||||||
Sbjct: 22664062 tgcagaacactgtctgatcagaaccagcctccaaggtacaagcttaggttctcaaatggc 22664121

                                                                            
Query: 194      ttgagtaatgaagttttcacaaaaaaggaaatccgttgtgcaaatggtgatcctctcaag 253
                ||||| ||||||||||||||||| || | |||| ||  ||  ||||| ||  ||||||||
Sbjct: 22664122 ttgagcaatgaagttttcacaaagaaaggaatctgtgatgttaatggagagtctctcaag 22664181

                                                                            
Query: 254      atatgtctggaggacaacaaccaacaagagaacaattctcgtcgccttctttctgccaag 313
                |||| | || | |  ||||||| |||||||  |   || | ||||||||||||||| |||
Sbjct: 22664182 atatctgtgcatgtaaacaacccacaagaggcctgctcgcatcgccttctttctgctaag 22664241

                                                                            
Query: 314      atcaaaattgttgttcttgatggtgacttcaacatagataatgaagattgctggacattg 373
                |||| | |||||||||||||||||||||||||||   || || | |  ||||||||||  
Sbjct: 22664242 atcagagttgttgttcttgatggtgacttcaacaagaatgatcaggggtgctggacatca 22664301

                                                                            
Query: 374      gagaatttcagcaggcatatcgttcgtccacgggacaaaattggggcagtgctgaccgga 433
                ||| | ||||| |  || || || || ||||| || ||| ||||| | |||||||| |||
Sbjct: 22664302 gaggagttcagaaaccacatagtgcgcccacgtgataaagttgggactgtgctgactgga 22664361

                                                                            
Query: 434      gagctggaggttagcctaaagaatggcaaagctgatctccgtgatgctacatttattgat 493
                ||||| ||| ||||||| || |||||  | ||| |  ||| |||||| || ||| |||||
Sbjct: 22664362 gagcttgagcttagcctgaaaaatggagaggcttacatccatgatgccacttttgttgat 22664421

                                                                            
Query: 494      aactccaagttcacgaggagtggcaagttcaggcttggggtaatggttgttgacgggctt 553
                ||||||||||||| ||||||||| |||||||| ||||||||||||||| |||| |  || 
Sbjct: 22664422 aactccaagttcatgaggagtggtaagttcagacttggggtaatggttattgatgatctc 22664481

                                                                            
Query: 554      ggtgaacggatcctagaagggataactgaacctttcacagtaaaggatcgtcgtggagaa 613
                |||||||| || |  ||||| |||||||||||||||   || ||||||||||| ||||||
Sbjct: 22664482 ggtgaacgtattcaggaaggcataactgaacctttcgttgtgaaggatcgtcgcggagaa 22664541

                  
Query: 614      gg 615
                ||
Sbjct: 22664542 gg 22664543



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                            
Query: 621      aaaagcatgccattccatcattggatgatgatgtttggcgcctgcagaaaatttcaaagg 680
                |||||||||  ||||||||||||||||||||||| ||||||||| |||| || ||||| |
Sbjct: 22664651 aaaagcatgaaattccatcattggatgatgatgtctggcgcctgaagaagatatcaaaag 22664710

                          
Query: 681      atggtgtctt 690
                ||||||||||
Sbjct: 22664711 atggtgtctt 22664720



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 324      ttgttcttgatggtgacttca 344
                |||||||||||||||||||||
Sbjct: 13043191 ttgttcttgatggtgacttca 13043211
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  194 bits (98), Expect = 3e-46
 Identities = 386/482 (80%)
 Strand = Plus / Plus

                                                                            
Query: 134      tgcagaacgctggttgaccaaaaccagactccaagatacaagcttaggttcctgaatggc 193
                |||||||| |||  ||| || |||||| ||||||| |||||||||||||||   ||||||
Sbjct: 22592253 tgcagaacactgtctgatcagaaccagcctccaaggtacaagcttaggttctcaaatggc 22592312

                                                                            
Query: 194      ttgagtaatgaagttttcacaaaaaaggaaatccgttgtgcaaatggtgatcctctcaag 253
                ||||| ||||||||||||||||| || | |||| ||  ||  ||||| ||  ||||||||
Sbjct: 22592313 ttgagcaatgaagttttcacaaagaaaggaatctgtgatgttaatggagagtctctcaag 22592372

                                                                            
Query: 254      atatgtctggaggacaacaaccaacaagagaacaattctcgtcgccttctttctgccaag 313
                |||| | || | |  ||||||| |||||||  |   || | ||||||||||||||| |||
Sbjct: 22592373 atatctgtgcatgtaaacaacccacaagaggcctgctcgcatcgccttctttctgctaag 22592432

                                                                            
Query: 314      atcaaaattgttgttcttgatggtgacttcaacatagataatgaagattgctggacattg 373
                |||| | |||||||||||||||||||||||||||   || || | |  ||||||||||  
Sbjct: 22592433 atcagagttgttgttcttgatggtgacttcaacaagaatgatcaggggtgctggacatca 22592492

                                                                            
Query: 374      gagaatttcagcaggcatatcgttcgtccacgggacaaaattggggcagtgctgaccgga 433
                ||| | ||||| |  || || || || ||||| || ||| ||||| | |||||||| |||
Sbjct: 22592493 gaggagttcagaaaccacatagtgcgcccacgtgataaagttgggactgtgctgactgga 22592552

                                                                            
Query: 434      gagctggaggttagcctaaagaatggcaaagctgatctccgtgatgctacatttattgat 493
                ||||| ||| ||||||| || |||||  | ||| |  ||| |||||| || ||| |||||
Sbjct: 22592553 gagcttgagcttagcctgaaaaatggagaggcttacatccatgatgccacttttgttgat 22592612

                                                                            
Query: 494      aactccaagttcacgaggagtggcaagttcaggcttggggtaatggttgttgacgggctt 553
                ||||||||||||| ||||||||| |||||||| ||||||||||||||| |||| |  || 
Sbjct: 22592613 aactccaagttcatgaggagtggtaagttcagacttggggtaatggttattgatgatctc 22592672

                                                                            
Query: 554      ggtgaacggatcctagaagggataactgaacctttcacagtaaaggatcgtcgtggagaa 613
                |||||||| || |  ||||| |||||||||||||||   || ||||||||||| ||||||
Sbjct: 22592673 ggtgaacgtattcaggaaggcataactgaacctttcgttgtgaaggatcgtcgcggagaa 22592732

                  
Query: 614      gg 615
                ||
Sbjct: 22592733 gg 22592734



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                            
Query: 621      aaaagcatgccattccatcattggatgatgatgtttggcgcctgcagaaaatttcaaagg 680
                |||||||||  ||||||||||||||||||||||| ||||||||| |||| || ||||| |
Sbjct: 22592842 aaaagcatgaaattccatcattggatgatgatgtctggcgcctgaagaagatatcaaaag 22592901

                          
Query: 681      atggtgtctt 690
                ||||||||||
Sbjct: 22592902 atggtgtctt 22592911



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 324      ttgttcttgatggtgacttca 344
                |||||||||||||||||||||
Sbjct: 12997465 ttgttcttgatggtgacttca 12997485
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>emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa0027H05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 138368

 Score =  194 bits (98), Expect = 3e-46
 Identities = 386/482 (80%)
 Strand = Plus / Plus

                                                                          
Query: 134    tgcagaacgctggttgaccaaaaccagactccaagatacaagcttaggttcctgaatggc 193
              |||||||| |||  ||| || |||||| ||||||| |||||||||||||||   ||||||
Sbjct: 109182 tgcagaacactgtctgatcagaaccagcctccaaggtacaagcttaggttctcaaatggc 109241

                                                                          
Query: 194    ttgagtaatgaagttttcacaaaaaaggaaatccgttgtgcaaatggtgatcctctcaag 253
              ||||| ||||||||||||||||| || | |||| ||  ||  ||||| ||  ||||||||
Sbjct: 109242 ttgagcaatgaagttttcacaaagaaaggaatctgtgatgttaatggagagtctctcaag 109301

                                                                          
Query: 254    atatgtctggaggacaacaaccaacaagagaacaattctcgtcgccttctttctgccaag 313
              |||| | || | |  ||||||| |||||||  |   || | ||||||||||||||| |||
Sbjct: 109302 atatctgtgcatgtaaacaacccacaagaggcctgctcgcatcgccttctttctgctaag 109361

                                                                          
Query: 314    atcaaaattgttgttcttgatggtgacttcaacatagataatgaagattgctggacattg 373
              |||| | |||||||||||||||||||||||||||   || || | |  ||||||||||  
Sbjct: 109362 atcagagttgttgttcttgatggtgacttcaacaagaatgatcaggggtgctggacatca 109421

                                                                          
Query: 374    gagaatttcagcaggcatatcgttcgtccacgggacaaaattggggcagtgctgaccgga 433
              ||| | ||||| |  || || || || ||||| || ||| ||||| | |||||||| |||
Sbjct: 109422 gaggagttcagaaaccacatagtgcgcccacgtgataaagttgggactgtgctgactgga 109481

                                                                          
Query: 434    gagctggaggttagcctaaagaatggcaaagctgatctccgtgatgctacatttattgat 493
              ||||| ||| ||||||| || |||||  | ||| |  ||| |||||| || ||| |||||
Sbjct: 109482 gagcttgagcttagcctgaaaaatggagaggcttacatccatgatgccacttttgttgat 109541

                                                                          
Query: 494    aactccaagttcacgaggagtggcaagttcaggcttggggtaatggttgttgacgggctt 553
              ||||||||||||| ||||||||| |||||||| ||||||||||||||| |||| |  || 
Sbjct: 109542 aactccaagttcatgaggagtggtaagttcagacttggggtaatggttattgatgatctc 109601

                                                                          
Query: 554    ggtgaacggatcctagaagggataactgaacctttcacagtaaaggatcgtcgtggagaa 613
              |||||||| || |  ||||| |||||||||||||||   || ||||||||||| ||||||
Sbjct: 109602 ggtgaacgtattcaggaaggcataactgaacctttcgttgtgaaggatcgtcgcggagaa 109661

                
Query: 614    gg 615
              ||
Sbjct: 109662 gg 109663



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                          
Query: 621    aaaagcatgccattccatcattggatgatgatgtttggcgcctgcagaaaatttcaaagg 680
              |||||||||  ||||||||||||||||||||||| ||||||||| |||| || ||||| |
Sbjct: 109771 aaaagcatgaaattccatcattggatgatgatgtctggcgcctgaagaagatatcaaaag 109830

                        
Query: 681    atggtgtctt 690
              ||||||||||
Sbjct: 109831 atggtgtctt 109840
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>emb|AL133268.15| Human DNA sequence from clone RP3-425P12 on chromosome 6p21.33-22.3
              Contains 3 novel genes, a nucleoporin 50kD (NUP50) (NPAP60
              NPAP60L) pseudogene and the CMAH gene for cytidine
              monophosphate-N-acetylneuraminic acid hydroxylase
              (CMP-N-acetylneuraminate monooxygenase) (CSAH), complete
              sequence
          Length = 110794

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 262    ggaggacaacaaccaacaagagaacaattct 292
              ||||||||||||| ||||| |||||||||||
Sbjct: 104564 ggaggacaacaacaaacaaaagaacaattct 104534
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>gb|AY780645.1| Lactobacillus reuteri CRL1098 cobalamin gene cluster, partial sequence
          Length = 43444

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 317   aaaattgttgttcttgatggtga 339
             |||||||||||||||||||||||
Sbjct: 40830 aaaattgttgttcttgatggtga 40852
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>dbj|AB009668.1| Homo sapiens gene for CMP-N-acetylneuraminic acid hydroxylase,
            partial cds
          Length = 22810

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 262  ggaggacaacaaccaacaagagaacaattct 292
            ||||||||||||| ||||| |||||||||||
Sbjct: 1906 ggaggacaacaacaaacaaaagaacaattct 1936
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>ref|XM_471587.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4800

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 324  ttgttcttgatggtgacttca 344
            |||||||||||||||||||||
Sbjct: 2567 ttgttcttgatggtgacttca 2547
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>ref|NM_194879.1| Oryza sativa (japonica cultivar-group) putative polyprotein
            (OSJNBa0028C16.11), mRNA
          Length = 5367

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 324  ttgttcttgatggtgacttca 344
            |||||||||||||||||||||
Sbjct: 2855 ttgttcttgatggtgacttca 2835
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>ref|NM_195858.1| Oryza sativa (japonica cultivar-group) putative retroelement
            (OSJNBa0035F15.3), mRNA
          Length = 3138

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 324  ttgttcttgatggtgacttca 344
            |||||||||||||||||||||
Sbjct: 2771 ttgttcttgatggtgacttca 2751
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>ref|XM_471902.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 5040

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 324  ttgttcttgatggtgacttca 344
            |||||||||||||||||||||
Sbjct: 2723 ttgttcttgatggtgacttca 2703
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>ref|XM_471920.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 5100

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 324  ttgttcttgatggtgacttca 344
            |||||||||||||||||||||
Sbjct: 2783 ttgttcttgatggtgacttca 2763
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>gb|AC146338.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0093C16, complete sequence
          Length = 206612

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 324   ttgttcttgatggtgacttca 344
             |||||||||||||||||||||
Sbjct: 53144 ttgttcttgatggtgacttca 53164
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>gb|AC131966.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
           OSJNAa0028C16, complete sequence
          Length = 151030

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 ttgttcttgatggtgacttca 344
           |||||||||||||||||||||
Sbjct: 769 ttgttcttgatggtgacttca 749
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>emb|CT025689.6| Mouse DNA sequence from clone RP24-236L7 on chromosome 14, complete
              sequence
          Length = 177482

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 154    aaaccagactccaagatacaa 174
              |||||||||||||||||||||
Sbjct: 118956 aaaccagactccaagatacaa 118936
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>emb|BX842603.2|OSJN00300 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1159F04, complete
             sequence
          Length = 158330

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 324   ttgttcttgatggtgacttca 344
             |||||||||||||||||||||
Sbjct: 64862 ttgttcttgatggtgacttca 64842
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>emb|AL731644.4|OSJN00287 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011K22,
             complete sequence
          Length = 145766

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 324   ttgttcttgatggtgacttca 344
             |||||||||||||||||||||
Sbjct: 68336 ttgttcttgatggtgacttca 68316
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>emb|AL731643.4|OSJN00284 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085C10,
              complete sequence
          Length = 202924

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 324    ttgttcttgatggtgacttca 344
              |||||||||||||||||||||
Sbjct: 120486 ttgttcttgatggtgacttca 120506
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>emb|AL731615.4|OSJN00256 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065J03,
             complete sequence
          Length = 144146

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 324   ttgttcttgatggtgacttca 344
             |||||||||||||||||||||
Sbjct: 78206 ttgttcttgatggtgacttca 78226
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>gb|AC119148.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0035F15, complete sequence
          Length = 138335

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 324   ttgttcttgatggtgacttca 344
             |||||||||||||||||||||
Sbjct: 21479 ttgttcttgatggtgacttca 21499
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>gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, complete sequence
          Length = 166757

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 324    ttgttcttgatggtgacttca 344
              |||||||||||||||||||||
Sbjct: 107526 ttgttcttgatggtgacttca 107506
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 324      ttgttcttgatggtgacttca 344
                |||||||||||||||||||||
Sbjct: 15738406 ttgttcttgatggtgacttca 15738386



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 324      ttgttcttgatggtgacttca 344
                |||||||||||||||||||||
Sbjct: 15604805 ttgttcttgatggtgacttca 15604785



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 324      ttgttcttgatggtgacttca 344
                |||||||||||||||||||||
Sbjct: 12516019 ttgttcttgatggtgacttca 12515999



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 324     ttgttcttgatggtgacttca 344
               |||||||||||||||||||||
Sbjct: 7732986 ttgttcttgatggtgacttca 7733006
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 324     ttgttcttgatggtgacttca 344
               |||||||||||||||||||||
Sbjct: 9533406 ttgttcttgatggtgacttca 9533426



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 324     ttgttcttgatggtgacttca 344
               |||||||||||||||||||||
Sbjct: 3137894 ttgttcttgatggtgacttca 3137874
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 324      ttgttcttgatggtgacttca 344
                |||||||||||||||||||||
Sbjct: 17001956 ttgttcttgatggtgacttca 17001936
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 324     ttgttcttgatggtgacttca 344
               |||||||||||||||||||||
Sbjct: 9978795 ttgttcttgatggtgacttca 9978815
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 324      ttgttcttgatggtgacttca 344
                |||||||||||||||||||||
Sbjct: 18871836 ttgttcttgatggtgacttca 18871816
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 324     ttgttcttgatggtgacttca 344
               |||||||||||||||||||||
Sbjct: 9822517 ttgttcttgatggtgacttca 9822537
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>gb|AC092645.2| Homo sapiens BAC clone RP11-399B17 from 2, complete sequence
          Length = 147390

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 202   tgaagttttcacaaaaaaggaaatc 226
             |||| ||||||||||||||||||||
Sbjct: 11091 tgaacttttcacaaaaaaggaaatc 11067
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>gb|AF546189.1| Contiguous genomic DNA sequence comprising the 19-kDa-zein gene family
              from Zea mays, complete sequence
          Length = 116115

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 324    ttgttcttgatggtgacttca 344
              |||||||||||||||||||||
Sbjct: 116049 ttgttcttgatggtgacttca 116029
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>dbj|AP003684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0485D10
          Length = 147464

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 324   ttgttcttgatggtgacttca 344
             |||||||||||||||||||||
Sbjct: 37401 ttgttcttgatggtgacttca 37381
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>dbj|AP005201.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0685B06
          Length = 140293

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 324    ttgttcttgatggtgacttca 344
              |||||||||||||||||||||
Sbjct: 108327 ttgttcttgatggtgacttca 108347
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>dbj|AP004663.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0410E02
          Length = 144294

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 324   ttgttcttgatggtgacttca 344
             |||||||||||||||||||||
Sbjct: 37473 ttgttcttgatggtgacttca 37453
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>dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1001_C01
          Length = 90750

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 324   ttgttcttgatggtgacttca 344
             |||||||||||||||||||||
Sbjct: 10444 ttgttcttgatggtgacttca 10464
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>dbj|AG266840.1| Oryza officinalis DNA, gypsy-type retrotransposon sequence, clone:
           RIRE166
          Length = 407

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 ttgttcttgatggtgacttca 344
           |||||||||||||||||||||
Sbjct: 52  ttgttcttgatggtgacttca 32
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 324     ttgttcttgatggtgacttca 344
               |||||||||||||||||||||
Sbjct: 9539445 ttgttcttgatggtgacttca 9539465



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 324     ttgttcttgatggtgacttca 344
               |||||||||||||||||||||
Sbjct: 3137815 ttgttcttgatggtgacttca 3137795
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>emb|AL731883.4|CNS08C8N Oryza sativa chromosome 12, . BAC OSJNBa0024B03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 148110

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 324   ttgttcttgatggtgacttca 344
             |||||||||||||||||||||
Sbjct: 24777 ttgttcttgatggtgacttca 24757
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>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 178827

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 324   ttgttcttgatggtgacttca 344
             |||||||||||||||||||||
Sbjct: 32394 ttgttcttgatggtgacttca 32414
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>gb|AC161214.4| Mus musculus chromosome 8, clone RP23-78A10, complete sequence
          Length = 182742

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 182   ttcctgaatggcttgagtaatgaagtttt 210
             |||||| |||||||||||||||| |||||
Sbjct: 40501 ttcctggatggcttgagtaatgatgtttt 40529
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>gb|AC152960.1| Mus musculus 6 BAC RP23-38B21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 222030

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 243    atcctctcaagatatgtctg 262
              ||||||||||||||||||||
Sbjct: 155226 atcctctcaagatatgtctg 155207
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>ref|XM_807004.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053507735.20) partial mRNA
          Length = 12642

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 600  atcgtcgtggagaaggatac 619
            ||||||||||||||||||||
Sbjct: 6502 atcgtcgtggagaaggatac 6521
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>gb|AC122358.2| Mus musculus BAC clone RP23-406B6 from chromosome 17, complete sequence
          Length = 184952

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 624    agcatgccattccatcattg 643
              ||||||||||||||||||||
Sbjct: 159804 agcatgccattccatcattg 159785
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>gb|AF527803.1| Homo sapiens cyclin-dependent kinase inhibitor 2A (CDKN2A) gene,
            complete cds, alternatively spliced
          Length = 28770

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 316  caaaattgttgttcttgatggtga 339
            |||||||||| |||||||||||||
Sbjct: 3891 caaaattgtttttcttgatggtga 3868
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>gb|AC118011.9| Mus musculus chromosome 1, clone RP23-453J22, complete sequence
          Length = 214056

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   caacaaccaacaagagaaca 287
             ||||||||||||||||||||
Sbjct: 30542 caacaaccaacaagagaaca 30561
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>emb|AL449423.14| Human DNA sequence from clone RP11-149I2 on chromosome 9 Contains the
             CDKN2A gene for cyclin-dependent kinase inhibitor 2A
             (melanoma, p16, inhibits CDK4), the gene for
             susceptibility protein NSG-x (LOC51198), the 5' end of a
             variant of the MTAP gene for methylthioadenosine
             phosphorylase (MSAP), the 3' end of the CDKN2B gene for
             cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)
             and 4 CpG islands, complete sequence
          Length = 101155

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 316   caaaattgttgttcttgatggtga 339
             |||||||||| |||||||||||||
Sbjct: 81662 caaaattgtttttcttgatggtga 81685
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>gb|AC098838.3| Genomic sequence for Mus musculus, clone RP23-27N1, from chromosome 17,
              complete sequence
          Length = 254336

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 624    agcatgccattccatcattg 643
              ||||||||||||||||||||
Sbjct: 167777 agcatgccattccatcattg 167796
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>gb|AC018994.7|AC018994 Homo sapiens chromosome 18, clone RP11-619L19, complete sequence
          Length = 166451

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     ggaggctgcggttcagtccg 53
              ||||||||||||||||||||
Sbjct: 106337 ggaggctgcggttcagtccg 106318
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>gb|AC000049.11| Homo sapiens Chromosome 9p21 Cosmid Clone c86, complete sequence
          Length = 44160

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 316   caaaattgttgttcttgatggtga 339
             |||||||||| |||||||||||||
Sbjct: 43185 caaaattgtttttcttgatggtga 43162
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>emb|BX649388.7| Zebrafish DNA sequence from clone CH211-225P5 in linkage group 4,
             complete sequence
          Length = 177865

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 636   catcattggatgatgatgtt 655
             ||||||||||||||||||||
Sbjct: 90370 catcattggatgatgatgtt 90389
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>emb|Y18707.1|DCA18707 Daucus carota Inv*Dc4, Inv*Dc4' (partial) genes
          Length = 12819

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 388  gcatatcgttcgtccacggg 407
            ||||||||||||||||||||
Sbjct: 3379 gcatatcgttcgtccacggg 3360
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>emb|X75352.1|DCRNAABF D.carota (Nantaise) mRNA for soluble acid beta-fructofuranosidase
           isoenzyme I (class 2 cDNA)
          Length = 2327

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 388 gcatatcgttcgtccacggg 407
           ||||||||||||||||||||
Sbjct: 409 gcatatcgttcgtccacggg 390
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>emb|X75351.1|DCRNABF D.carota (Nantaise) mRNA for soluble acid beta-fructofuranosidase
           isoenzyme I (class 1 cDNA)
          Length = 2367

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 388 gcatatcgttcgtccacggg 407
           ||||||||||||||||||||
Sbjct: 419 gcatatcgttcgtccacggg 400
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>emb|AL845271.10| Mouse DNA sequence from clone RP23-119O19 on chromosome 2, complete
             sequence
          Length = 136949

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 485   tttattgataactccaagtt 504
             ||||||||||||||||||||
Sbjct: 11562 tttattgataactccaagtt 11581
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>dbj|AB060808.1| Homo sapiens gene for p16/CDKN2A, complete cds
          Length = 250000

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 316    caaaattgttgttcttgatggtga 339
              |||||||||| |||||||||||||
Sbjct: 208312 caaaattgtttttcttgatggtga 208335


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,075,368
Number of Sequences: 3902068
Number of extensions: 6075368
Number of successful extensions: 123373
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122668
Number of HSP's gapped (non-prelim): 705
length of query: 690
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 667
effective length of database: 17,143,297,704
effective search space: 11434579568568
effective search space used: 11434579568568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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