ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31c17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121711.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076O20, full insert sequence Length = 4769 Score = 212 bits (107), Expect = 8e-52 Identities = 244/289 (84%), Gaps = 3/289 (1%) Strand = Plus / Plus Query: 1 tttgctttctgtgggaatgctttccttgaatcatgccaatcaattggtgatgcctcgggt 60 |||| |||||| |||||||||||||| ||||||||||| ||||| |||||||| || ||| Sbjct: 4188 tttggtttctgcgggaatgctttcctggaatcatgccagtcaataggtgatgcatctggt 4247 Query: 61 ggttcctttagcagctcagagttgaacggacaaccactgaatgatgcacttttggatatg 120 || ||||||||||| ||||||||||| || ||||| ||| ||||| || |||||||||| Sbjct: 4248 ggatcctttagcagttcagagttgaatgggcaacctctggatgattcaattttggatatt 4307 Query: 121 gagtcatcgtcatttggcttcttgagccagattccccggaatttcagtttttcagactta 180 || ||||| || |||||||||||||| ||| ||||||| ||||| |||||||||| || Sbjct: 4308 gaatcatcatcgtttggcttcttgagtcagcttccccgaaattt---tttttcagaccta 4364 Query: 181 acagaggggttcaaccaaaatacagaagtattggacaattatagcaggtcaccatttctc 240 |||||| |||| |||| |||||| |||| ||||||||| ||| |||||| || ||| Sbjct: 4365 ccagaggatttcagtcaaagcacagaaatattagacaattatggcaagtcaccgttcctc 4424 Query: 241 tcatctgagccaaataacttctcagattctacaggtggagaacatacag 289 | ||||||| ||||||||| ||||||||||||||||| ||||| |||| Sbjct: 4425 ccttctgagcaaaataacttttcagattctacaggtggtgaacacacag 4473
>dbj|AK064803.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D12, full insert sequence Length = 1395 Score = 212 bits (107), Expect = 8e-52 Identities = 244/289 (84%), Gaps = 3/289 (1%) Strand = Plus / Plus Query: 1 tttgctttctgtgggaatgctttccttgaatcatgccaatcaattggtgatgcctcgggt 60 |||| |||||| |||||||||||||| ||||||||||| ||||| |||||||| || ||| Sbjct: 814 tttggtttctgcgggaatgctttcctggaatcatgccagtcaataggtgatgcatctggt 873 Query: 61 ggttcctttagcagctcagagttgaacggacaaccactgaatgatgcacttttggatatg 120 || ||||||||||| ||||||||||| || ||||| ||| ||||| || |||||||||| Sbjct: 874 ggatcctttagcagttcagagttgaatgggcaacctctggatgattcaattttggatatt 933 Query: 121 gagtcatcgtcatttggcttcttgagccagattccccggaatttcagtttttcagactta 180 || ||||| || |||||||||||||| ||| ||||||| ||||| |||||||||| || Sbjct: 934 gaatcatcatcgtttggcttcttgagtcagcttccccgaaattt---tttttcagaccta 990 Query: 181 acagaggggttcaaccaaaatacagaagtattggacaattatagcaggtcaccatttctc 240 |||||| |||| |||| |||||| |||| ||||||||| ||| |||||| || ||| Sbjct: 991 ccagaggatttcagtcaaagcacagaaatattagacaattatggcaagtcaccgttcctc 1050 Query: 241 tcatctgagccaaataacttctcagattctacaggtggagaacatacag 289 | ||||||| ||||||||| ||||||||||||||||| ||||| |||| Sbjct: 1051 ccttctgagcaaaataacttttcagattctacaggtggtgaacacacag 1099
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 153 bits (77), Expect = 7e-34 Identities = 160/187 (85%), Gaps = 3/187 (1%) Strand = Plus / Minus Query: 1 tttgctttctgtgggaatgctttccttgaatcatgccaatcaattggtgatgcctcgggt 60 |||| |||||| |||||||||||||| ||||||||||| ||||| |||||||| || ||| Sbjct: 29283114 tttggtttctgcgggaatgctttcctggaatcatgccagtcaataggtgatgcatctggt 29283055 Query: 61 ggttcctttagcagctcagagttgaacggacaaccactgaatgatgcacttttggatatg 120 || ||||||||||| ||||||||||| || ||||| ||| ||||| || |||||||||| Sbjct: 29283054 ggatcctttagcagttcagagttgaatgggcaacctctggatgattcaattttggatatt 29282995 Query: 121 gagtcatcgtcatttggcttcttgagccagattccccggaatttcagtttttcagactta 180 || ||||| || |||||||||||||| ||| ||||||| ||||| |||||||||| || Sbjct: 29282994 gaatcatcatcgtttggcttcttgagtcagcttccccgaaattt---tttttcagaccta 29282938 Query: 181 acagagg 187 |||||| Sbjct: 29282937 ccagagg 29282931 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 203 cagaagtattggacaattatagcaggtcaccatttctctcatctgagccaaataacttct 262 ||||| |||| ||||||||| ||| |||||| || ||| | ||||||| ||||||||| | Sbjct: 29282813 cagaaatattagacaattatggcaagtcaccgttcctcccttctgagcaaaataactttt 29282754 Query: 263 cagattctacaggtggagaacatacag 289 |||||||||||||||| ||||| |||| Sbjct: 29282753 cagattctacaggtggtgaacacacag 29282727
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0018H04 Length = 142053 Score = 153 bits (77), Expect = 7e-34 Identities = 160/187 (85%), Gaps = 3/187 (1%) Strand = Plus / Minus Query: 1 tttgctttctgtgggaatgctttccttgaatcatgccaatcaattggtgatgcctcgggt 60 |||| |||||| |||||||||||||| ||||||||||| ||||| |||||||| || ||| Sbjct: 45912 tttggtttctgcgggaatgctttcctggaatcatgccagtcaataggtgatgcatctggt 45853 Query: 61 ggttcctttagcagctcagagttgaacggacaaccactgaatgatgcacttttggatatg 120 || ||||||||||| ||||||||||| || ||||| ||| ||||| || |||||||||| Sbjct: 45852 ggatcctttagcagttcagagttgaatgggcaacctctggatgattcaattttggatatt 45793 Query: 121 gagtcatcgtcatttggcttcttgagccagattccccggaatttcagtttttcagactta 180 || ||||| || |||||||||||||| ||| ||||||| ||||| |||||||||| || Sbjct: 45792 gaatcatcatcgtttggcttcttgagtcagcttccccgaaattt---tttttcagaccta 45736 Query: 181 acagagg 187 |||||| Sbjct: 45735 ccagagg 45729 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 203 cagaagtattggacaattatagcaggtcaccatttctctcatctgagccaaataacttct 262 ||||| |||| ||||||||| ||| |||||| || ||| | ||||||| ||||||||| | Sbjct: 45611 cagaaatattagacaattatggcaagtcaccgttcctcccttctgagcaaaataactttt 45552 Query: 263 cagattctacaggtggagaacatacag 289 |||||||||||||||| ||||| |||| Sbjct: 45551 cagattctacaggtggtgaacacacag 45525
>ref|XM_464059.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1722 Score = 139 bits (70), Expect = 1e-29 Identities = 208/254 (81%) Strand = Plus / Plus Query: 19 gctttccttgaatcatgccaatcaattggtgatgcctcgggtggttcctttagcagctca 78 |||||||| ||| | ||||| |||||||| |||||||| ||||| ||||| |||||||| Sbjct: 891 gctttcctagaaccttgccagtcaattggggatgcctctggtggatccttcagcagctct 950 Query: 79 gagttgaacggacaaccactgaatgatgcacttttggatatggagtcatcgtcatttggc 138 ||| |||| ||||| ||||| |||| || || |||| ||||| ||||| || ||||| Sbjct: 951 gagctgaatggacagccactaggtgatccaattatggacatggattcatcatcttttggt 1010 Query: 139 ttcttgagccagattccccggaatttcagtttttcagacttaacagaggggttcaaccaa 198 ||||||||||| ||||| |||||||||||||||||||| ||||| || | || | |||| Sbjct: 1011 ttcttgagccaaattcctcggaatttcagtttttcagatttaactgaagactttagccaa 1070 Query: 199 aatacagaagtattggacaattatagcaggtcaccatttctctcatctgagccaaataac 258 | | ||||| ||||||| |||||| |||| || || ||| || | ||||| |||||||| Sbjct: 1071 agtgcagaaatattggagaattatggcagatccccttttatcccttctgaaccaaataat 1130 Query: 259 ttctcagattctac 272 |||||||| ||||| Sbjct: 1131 ttctcagagtctac 1144
>dbj|AK073353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025E21, full insert sequence Length = 1721 Score = 139 bits (70), Expect = 1e-29 Identities = 208/254 (81%) Strand = Plus / Plus Query: 19 gctttccttgaatcatgccaatcaattggtgatgcctcgggtggttcctttagcagctca 78 |||||||| ||| | ||||| |||||||| |||||||| ||||| ||||| |||||||| Sbjct: 890 gctttcctagaaccttgccagtcaattggggatgcctctggtggatccttcagcagctct 949 Query: 79 gagttgaacggacaaccactgaatgatgcacttttggatatggagtcatcgtcatttggc 138 ||| |||| ||||| ||||| |||| || || |||| ||||| ||||| || ||||| Sbjct: 950 gagctgaatggacagccactaggtgatccaattatggacatggattcatcatcttttggt 1009 Query: 139 ttcttgagccagattccccggaatttcagtttttcagacttaacagaggggttcaaccaa 198 ||||||||||| ||||| |||||||||||||||||||| ||||| || | || | |||| Sbjct: 1010 ttcttgagccaaattcctcggaatttcagtttttcagatttaactgaagactttagccaa 1069 Query: 199 aatacagaagtattggacaattatagcaggtcaccatttctctcatctgagccaaataac 258 | | ||||| ||||||| |||||| |||| || || ||| || | ||||| |||||||| Sbjct: 1070 agtgcagaaatattggagaattatggcagatccccttttatcccttctgaaccaaataat 1129 Query: 259 ttctcagattctac 272 |||||||| ||||| Sbjct: 1130 ttctcagagtctac 1143
>gb|BT024013.1| Zea mays clone EL01N0401G10 mRNA sequence Length = 1369 Score = 123 bits (62), Expect = 6e-25 Identities = 127/148 (85%), Gaps = 3/148 (2%) Strand = Plus / Plus Query: 1 tttgctttctgtgggaatgctttccttgaatcatgccaatcaattggtgatgcctcgggt 60 ||||| ||||||||||| ||||||| ||||||||||| || || |||||||| || ||| Sbjct: 780 tttgccttctgtgggaacactttcctggaatcatgccagtcgataggtgatgcatctggt 839 Query: 61 ggt---tcctttagcagctcagagttgaacggacaaccactgaatgatgcacttttggat 117 ||| ||||| ||||||||||||||||| || |||||||| || ||| || |||||||| Sbjct: 840 ggtggatccttcagcagctcagagttgaatgggcaaccactaaacgattcaattttggat 899 Query: 118 atggagtcatcgtcatttggcttcttga 145 ||||||||||| |||||| ||||||||| Sbjct: 900 atggagtcatcatcatttagcttcttga 927
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 119 bits (60), Expect = 9e-24 Identities = 138/164 (84%) Strand = Plus / Plus Query: 19 gctttccttgaatcatgccaatcaattggtgatgcctcgggtggttcctttagcagctca 78 |||||||| ||| | ||||| |||||||| |||||||| ||||| ||||| |||||||| Sbjct: 1970825 gctttcctagaaccttgccagtcaattggggatgcctctggtggatccttcagcagctct 1970884 Query: 79 gagttgaacggacaaccactgaatgatgcacttttggatatggagtcatcgtcatttggc 138 ||| |||| ||||| ||||| |||| || || |||| ||||| ||||| || ||||| Sbjct: 1970885 gagctgaatggacagccactaggtgatccaattatggacatggattcatcatcttttggt 1970944 Query: 139 ttcttgagccagattccccggaatttcagtttttcagacttaac 182 ||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 1970945 ttcttgagccaaattcctcggaatttcagtttttcagatttaac 1970988 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 1 tttgctttctgtgggaatgctttccttgaatcat 34 |||| ||||||||||||||||||||| ||||||| Sbjct: 5057488 tttggtttctgtgggaatgctttcctggaatcat 5057521 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Plus Query: 58 ggtggttcctttagcagctcagagttgaacgg 89 ||||| ||||||||||| |||||||||||||| Sbjct: 5057532 ggtggatcctttagcagttcagagttgaacgg 5057563
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0026E05 Length = 159860 Score = 119 bits (60), Expect = 9e-24 Identities = 138/164 (84%) Strand = Plus / Plus Query: 19 gctttccttgaatcatgccaatcaattggtgatgcctcgggtggttcctttagcagctca 78 |||||||| ||| | ||||| |||||||| |||||||| ||||| ||||| |||||||| Sbjct: 21033 gctttcctagaaccttgccagtcaattggggatgcctctggtggatccttcagcagctct 21092 Query: 79 gagttgaacggacaaccactgaatgatgcacttttggatatggagtcatcgtcatttggc 138 ||| |||| ||||| ||||| |||| || || |||| ||||| ||||| || ||||| Sbjct: 21093 gagctgaatggacagccactaggtgatccaattatggacatggattcatcatcttttggt 21152 Query: 139 ttcttgagccagattccccggaatttcagtttttcagacttaac 182 ||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 21153 ttcttgagccaaattcctcggaatttcagtttttcagatttaac 21196
>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0081C13 Length = 144624 Score = 119 bits (60), Expect = 9e-24 Identities = 138/164 (84%) Strand = Plus / Plus Query: 19 gctttccttgaatcatgccaatcaattggtgatgcctcgggtggttcctttagcagctca 78 |||||||| ||| | ||||| |||||||| |||||||| ||||| ||||| |||||||| Sbjct: 110386 gctttcctagaaccttgccagtcaattggggatgcctctggtggatccttcagcagctct 110445 Query: 79 gagttgaacggacaaccactgaatgatgcacttttggatatggagtcatcgtcatttggc 138 ||| |||| ||||| ||||| |||| || || |||| ||||| ||||| || ||||| Sbjct: 110446 gagctgaatggacagccactaggtgatccaattatggacatggattcatcatcttttggt 110505 Query: 139 ttcttgagccagattccccggaatttcagtttttcagacttaac 182 ||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 110506 ttcttgagccaaattcctcggaatttcagtttttcagatttaac 110549
>gb|AY107192.1| Zea mays PCO124577 mRNA sequence Length = 1371 Score = 115 bits (58), Expect = 1e-22 Identities = 126/148 (85%), Gaps = 3/148 (2%) Strand = Plus / Plus Query: 1 tttgctttctgtgggaatgctttccttgaatcatgccaatcaattggtgatgcctcgggt 60 |||||||||||||||||| ||||||| ||||| ||||| ||||| || ||||| || ||| Sbjct: 757 tttgctttctgtgggaatactttcctggaatcgtgccagtcaataggcgatgcatctggt 816 Query: 61 ggt---tcctttagcagctcagagttgaacggacaaccactgaatgatgcacttttggat 117 ||| ||||| || ||||||||| ||||||| |||||||| || ||| || || ||||| Sbjct: 817 ggtggatccttcagtagctcagagctgaacgggcaaccactaaacgattcaattctggat 876 Query: 118 atggagtcatcgtcatttggcttcttga 145 ||||| |||||||||||| ||||||||| Sbjct: 877 atggaatcatcgtcatttagcttcttga 904
>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09 Length = 132729 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 1 tttgctttctgtgggaatgctttccttgaatcat 34 |||| ||||||||||||||||||||| ||||||| Sbjct: 128614 tttggtttctgtgggaatgctttcctggaatcat 128647 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Plus Query: 58 ggtggttcctttagcagctcagagttgaacgg 89 ||||| ||||||||||| |||||||||||||| Sbjct: 128658 ggtggatcctttagcagttcagagttgaacgg 128689
>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0453H10 Length = 133464 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 1 tttgctttctgtgggaatgctttccttgaatcat 34 |||| ||||||||||||||||||||| ||||||| Sbjct: 17986 tttggtttctgtgggaatgctttcctggaatcat 18019 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Plus Query: 58 ggtggttcctttagcagctcagagttgaacgg 89 ||||| ||||||||||| |||||||||||||| Sbjct: 18030 ggtggatcctttagcagttcagagttgaacgg 18061
>gb|AC055758.23| Homo sapiens 3 BAC RP11-88H10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173456 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 gctttctgtgggaatgctttc 24 ||||||||||||||||||||| Sbjct: 988 gctttctgtgggaatgctttc 1008
>gb|AC092976.5| Homo sapiens 3q BAC RP11-297C5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 44051 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 gctttctgtgggaatgctttc 24 ||||||||||||||||||||| Sbjct: 43035 gctttctgtgggaatgctttc 43055
>gb|AC078957.16| Homo sapiens Xp BAC RP11-339E16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198088 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 ttgtacatattcatggagaac 378 ||||||||||||||||||||| Sbjct: 117177 ttgtacatattcatggagaac 117197
>emb|Z24357.1|HS319ZF1 H. sapiens (D3S1608) DNA segment containing (CA) repeat; clone AFM319zf1; single read Length = 346 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 gctttctgtgggaatgctttc 24 ||||||||||||||||||||| Sbjct: 59 gctttctgtgggaatgctttc 39
>gb|AY329623.1| Mus musculus cellular nucleic acid binding protein (Cnbp) gene, complete cds Length = 8035 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttcagtttttcagacttaa 181 |||||||||||||||||||| Sbjct: 1559 tttcagtttttcagacttaa 1540
>gb|AY329615.1| Mus musculus Cnbp gene, intron 1 and DM2 repeat region Length = 5127 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttcagtttttcagacttaa 181 |||||||||||||||||||| Sbjct: 1363 tttcagtttttcagacttaa 1344
>gb|AC094900.9| Rattus norvegicus 4 BAC CH230-6J7 (Children's Hospital Oakland Research Institute) complete sequence Length = 79001 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ttttcccttgttagttccaa 420 |||||||||||||||||||| Sbjct: 20321 ttttcccttgttagttccaa 20302
>gb|AC134460.4| Mus musculus BAC clone RP23-373D18 from chromosome 10, complete sequence Length = 174545 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 catgccaatcaattggtgatgcct 55 |||||||||||||||| ||||||| Sbjct: 51447 catgccaatcaattggagatgcct 51424
>gb|AC129023.4| Mus musculus BAC clone RP23-430E12 from chromosome 18, complete sequence Length = 185832 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 tttgtacatattcatggagaactt 380 ||||||||| |||||||||||||| Sbjct: 187 tttgtacattttcatggagaactt 210
>gb|AC092788.3| Homo sapiens BAC clone RP11-333G13 from 7, complete sequence Length = 42544 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ttgtacatattcatggagaacttg 381 |||||||||||||||||| ||||| Sbjct: 8289 ttgtacatattcatggagtacttg 8312
>gb|AC146851.1| Human Herpesvirus 5 Towne-BAC isolate, complete sequence Length = 229483 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 aatgtaacagtatgggatga 448 |||||||||||||||||||| Sbjct: 27830 aatgtaacagtatgggatga 27849
>gb|AC125456.4| Mus musculus BAC clone RP24-193M20 from chromosome 18, complete sequence Length = 142347 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 tttgtacatattcatggagaactt 380 ||||||||| |||||||||||||| Sbjct: 103236 tttgtacattttcatggagaactt 103259
>gb|AC126695.4| Mus musculus BAC clone RP23-313D2 from 18, complete sequence Length = 171427 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 agaacttgagcaactttcat 393 |||||||||||||||||||| Sbjct: 142371 agaacttgagcaactttcat 142352
>emb|AL355358.9| Human DNA sequence from clone RP11-536L15 on chromosome 6 Contains a ribosomal protein S29 (RPS29) pseudogene, complete sequence Length = 141825 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 ttttgtacatattcatggag 375 |||||||||||||||||||| Sbjct: 117935 ttttgtacatattcatggag 117954
>emb|BX548247.6| Zebrafish DNA sequence from clone DKEY-177G18 in linkage group 23, complete sequence Length = 180406 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 caaataacttctcagattct 270 |||||||||||||||||||| Sbjct: 160837 caaataacttctcagattct 160856
>gb|AC104333.2| Homo sapiens chromosome 1 clone RP11-348H3, complete sequence Length = 162984 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 tgcaggctgagcagctaccc 351 |||||||||||||||||||| Sbjct: 36559 tgcaggctgagcagctaccc 36578
>gb|AC103921.2| Homo sapiens chromosome 3 clone RP11-131O21, complete sequence Length = 156264 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cagtttttcagacttaacag 184 |||||||||||||||||||| Sbjct: 47839 cagtttttcagacttaacag 47820
>gb|AC103587.2| Homo sapiens chromosome 3 clone RP11-164G20, complete sequence Length = 133921 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cagtttttcagacttaacag 184 |||||||||||||||||||| Sbjct: 91368 cagtttttcagacttaacag 91349
>gb|AC090736.5| Homo sapiens chromosome 8, clone RP11-1126C1, complete sequence Length = 145832 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 aaccaaaatacagaagtatt 212 |||||||||||||||||||| Sbjct: 127276 aaccaaaatacagaagtatt 127257
>gb|AC158626.6| Mus musculus 6 BAC RP23-4F16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 240079 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttcagtttttcagacttaa 181 |||||||||||||||||||| Sbjct: 13904 tttcagtttttcagacttaa 13885
>gb|AC140372.3| Mus musculus BAC clone RP23-185B17 from chromosome 3, complete sequence Length = 180084 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 catgctgtgcctgcaggctg 340 |||||||||||||||||||| Sbjct: 39430 catgctgtgcctgcaggctg 39411
>gb|AY176064.1| Mus musculus cellular nucleic acid binding protein (Cnbp) gene, complete cds Length = 12191 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttcagtttttcagacttaa 181 |||||||||||||||||||| Sbjct: 4756 tttcagtttttcagacttaa 4737
>gb|AC020603.4|AC020603 Homo sapiens BAC clone RP11-534K13 from 8, complete sequence Length = 202317 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 aaccaaaatacagaagtatt 212 |||||||||||||||||||| Sbjct: 28932 aaccaaaatacagaagtatt 28913
>gb|AC153872.2| Mus musculus 6 BAC RP23-226O20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 203418 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttcagtttttcagacttaa 181 |||||||||||||||||||| Sbjct: 30917 tttcagtttttcagacttaa 30936
>gb|AC092135.4| Homo sapiens chromosome 16 clone RP11-274A11, complete sequence Length = 185193 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 agacttaacagaggggttca 193 |||||||||||||||||||| Sbjct: 112500 agacttaacagaggggttca 112519
>gb|AC008304.3|AC008304 Drosophila melanogaster, chromosome 2R, region 59D2-59D3, BAC clone BACR04G19, complete sequence Length = 181955 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atgccaatcaattggtgatg 52 |||||||||||||||||||| Sbjct: 54611 atgccaatcaattggtgatg 54630
>gb|AC092139.5| Homo sapiens chromosome 16 clone RP11-391L3, complete sequence Length = 191731 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 agacttaacagaggggttca 193 |||||||||||||||||||| Sbjct: 1937 agacttaacagaggggttca 1956
>gb|AC012500.7| Homo sapiens BAC clone RP11-434M17 from 2, complete sequence Length = 117763 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 ttggcttcttgagccagatt 153 |||||||||||||||||||| Sbjct: 77709 ttggcttcttgagccagatt 77690
>gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chromosome y, complete sequence Length = 198653 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ataacttctcagattctaca 273 |||||||||||||||||||| Sbjct: 43537 ataacttctcagattctaca 43518
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 168 tttttcagacttaacagaggggtt 191 ||||||| |||||||||||||||| Sbjct: 767675 tttttcaaacttaacagaggggtt 767698
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 370 atggagaacttgagcaactttcat 393 ||||||||| |||||||||||||| Sbjct: 896169 atggagaacgtgagcaactttcat 896192
>emb|AL451077.9| Human DNA sequence from clone RP11-305A3 on chromosome 1, complete sequence Length = 173609 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tgcaggctgagcagctaccc 351 |||||||||||||||||||| Sbjct: 19177 tgcaggctgagcagctaccc 19158
>emb|Z92833.1|CEF38A6 Caenorhabditis elegans Cosmid F38A6, complete sequence Length = 36256 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 368 tcatggagaacttgagcaactttc 391 |||| ||||||||||||||||||| Sbjct: 3445 tcatagagaacttgagcaactttc 3468
>gb|AE003460.2| Drosophila melanogaster chromosome 2R, section 68 of 73 of the complete sequence Length = 299331 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atgccaatcaattggtgatg 52 |||||||||||||||||||| Sbjct: 107088 atgccaatcaattggtgatg 107107
>emb|BX004975.9| Zebrafish DNA sequence from clone DKEY-14B16, complete sequence Length = 208909 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 25 cttgaatcatgccaatcaattggtgatg 52 ||||| ||||||| |||||||||||||| Sbjct: 147472 cttgagtcatgcccatcaattggtgatg 147499 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,646,353 Number of Sequences: 3902068 Number of extensions: 4646353 Number of successful extensions: 83197 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83016 Number of HSP's gapped (non-prelim): 177 length of query: 499 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 477 effective length of database: 17,147,199,772 effective search space: 8179214291244 effective search space used: 8179214291244 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
