| Clone Name | bags30n09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023L10, full insert sequence Length = 1437 Score = 525 bits (265), Expect = e-146 Identities = 433/489 (88%) Strand = Plus / Plus Query: 166 acacacacatgaggtgcattgttcaagggaaaggagccgtgcagcttggaaagctattga 225 ||||||| || | |||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 409 acacacaaatcaagtgcattgctcaagggaaagaagccgtgcagcttggaaagctattga 468 Query: 226 cgagtacttgatgccctttgtggaaaaggagaaatatgaactcccaagcaaatgcagact 285 ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct: 469 tgagtatttgatgccctttgtggaaaaagagaaatatgaactcccaagcaaatgtagact 528 Query: 286 tcgtcctgaaaacgacatgtttcgggaacaagagcaacataagatccattttgatgttaa 345 || ||||| || ||||||||||||||||| ||||| |||||||| || |||||| | || Sbjct: 529 tcatcctggtaatgacatgtttcgggaacaggagcagcataagattcactttgatataaa 588 Query: 346 cgagtggcgttgtggcttctgcaagaaatcttttcgggcagaaaaatttatcgatcagca 405 || ||||| ||||| |||||||||||| | || || ||||| || || | |||||||| Sbjct: 589 tgaatggcgctgtggtttctgcaagaaagccttccgagcagagaagttccttgatcagca 648 Query: 406 ttttgcaaaccggcacaataatttgttggataatagtcaaggaagatgcttggcagatct 465 |||| || |||||||||||| | |||||||||||||||||||||||||||| ||||| Sbjct: 649 ttttcacaatcggcacaataatcttgtggataatagtcaaggaagatgcttggctgatct 708 Query: 466 ttgtggagcacttcactgtgatctgacaatggagttcaagaaaccaaagagtaaatgcaa 525 ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct: 709 atgtggagcacttcactgtgatctgatgttggagtttaagaaaccaaagagtaaatgcag 768 Query: 526 tgatgctgcagctgcaaggaaccgtcatcgttgtgagagccttgcagacagttgctttcc 585 || |||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| Sbjct: 769 tgcaactgcagctgcaaggaatcgtcatctttgtgagagccttgcagatagttgctttcc 828 Query: 586 tattaatcaagggcattctgccagccgtcttcatgaatttttcttgcaccaattctgtga 645 ||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| Sbjct: 829 tattaatcaagggcaatctgccagccgtcttcatgaatttctcttgcgccaattctgtga 888 Query: 646 tgctcacac 654 ||| ||||| Sbjct: 889 tgcccacac 897
>gb|AY108722.1| Zea mays PCO148627 mRNA sequence Length = 806 Score = 168 bits (85), Expect = 1e-38 Identities = 139/157 (88%), Gaps = 5/157 (3%) Strand = Plus / Plus Query: 498 agttcaagaaaccaaagagtaaatgcaatgatgctgcagctgcaaggaaccgtcatcgtt 557 ||||||| |||||||| ||||||||||||| ||||||||| ||||||| ||||||| || Sbjct: 15 agttcaaaaaaccaaaaagtaaatgcaatgcagctgcagctacaaggaatcgtcatcttt 74 Query: 558 gtgagagccttgcagacagttgctttcctattaatcaagggcattctgccagccgtcttc 617 ||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 75 -----agccttgcagacagttgctttcctattaatcaaggtcttgctgccagccgtcttc 129 Query: 618 atgaatttttcttgcaccaattctgtgatgctcacac 654 ||||||||||||||| ||| || |||||||||||||| Sbjct: 130 atgaatttttcttgcgccagttttgtgatgctcacac 166
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 159 bits (80), Expect = 1e-35 Identities = 170/200 (85%) Strand = Plus / Plus Query: 228 agtacttgatgccctttgtggaaaaggagaaatatgaactcccaagcaaatgcagacttc 287 |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 7307484 agtatttgatgccctttgtggaaaaagagaaatatgaactcccaagcaaatgtagacttc 7307543 Query: 288 gtcctgaaaacgacatgtttcgggaacaagagcaacataagatccattttgatgttaacg 347 ||||| || ||||||||||||||||| ||||| |||||||| || |||||| | || | Sbjct: 7307544 atcctggtaatgacatgtttcgggaacaggagcagcataagattcactttgatataaatg 7307603 Query: 348 agtggcgttgtggcttctgcaagaaatcttttcgggcagaaaaatttatcgatcagcatt 407 | ||||| ||||| |||||||||||| | || || ||||| || || | |||||||||| Sbjct: 7307604 aatggcgctgtggtttctgcaagaaagccttccgagcagagaagttccttgatcagcatt 7307663 Query: 408 ttgcaaaccggcacaataat 427 || || |||||||||||| Sbjct: 7307664 ttcacaatcggcacaataat 7307683 Score = 149 bits (75), Expect = 1e-32 Identities = 111/123 (90%) Strand = Plus / Plus Query: 440 agtcaaggaagatgcttggcagatctttgtggagcacttcactgtgatctgacaatggag 499 |||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| Sbjct: 7308036 agtcaaggaagatgcttggctgatctatgtggagcacttcactgtgatctgatgttggag 7308095 Query: 500 ttcaagaaaccaaagagtaaatgcaatgatgctgcagctgcaaggaaccgtcatcgttgt 559 || |||||||||||||||||||||| || |||||||||||||||| ||||||| |||| Sbjct: 7308096 tttaagaaaccaaagagtaaatgcagtgcaactgcagctgcaaggaatcgtcatctttgt 7308155 Query: 560 gag 562 ||| Sbjct: 7308156 gag 7308158 Score = 103 bits (52), Expect = 7e-19 Identities = 58/60 (96%) Strand = Plus / Plus Query: 561 agagccttgcagacagttgctttcctattaatcaagggcattctgccagccgtcttcatg 620 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 7308813 agagccttgcagatagttgctttcctattaatcaagggcaatctgccagccgtcttcatg 7308872 Score = 79.8 bits (40), Expect = 1e-11 Identities = 55/60 (91%) Strand = Plus / Plus Query: 166 acacacacatgaggtgcattgttcaagggaaaggagccgtgcagcttggaaagctattga 225 ||||||| || | |||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 7307339 acacacaaatcaagtgcattgctcaagggaaagaagccgtgcagcttggaaagctattga 7307398 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 620 gaatttttcttgcaccaattctgtgatgctcacac 654 |||||| |||||| ||||||||||||||| ||||| Sbjct: 7308963 gaatttctcttgcgccaattctgtgatgcccacac 7308997 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ctcatcccttctcgcctctt 77 |||||||||||||||||||| Sbjct: 25084915 ctcatcccttctcgcctctt 25084934
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 159 bits (80), Expect = 1e-35 Identities = 170/200 (85%) Strand = Plus / Plus Query: 228 agtacttgatgccctttgtggaaaaggagaaatatgaactcccaagcaaatgcagacttc 287 |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 7307363 agtatttgatgccctttgtggaaaaagagaaatatgaactcccaagcaaatgtagacttc 7307422 Query: 288 gtcctgaaaacgacatgtttcgggaacaagagcaacataagatccattttgatgttaacg 347 ||||| || ||||||||||||||||| ||||| |||||||| || |||||| | || | Sbjct: 7307423 atcctggtaatgacatgtttcgggaacaggagcagcataagattcactttgatataaatg 7307482 Query: 348 agtggcgttgtggcttctgcaagaaatcttttcgggcagaaaaatttatcgatcagcatt 407 | ||||| ||||| |||||||||||| | || || ||||| || || | |||||||||| Sbjct: 7307483 aatggcgctgtggtttctgcaagaaagccttccgagcagagaagttccttgatcagcatt 7307542 Query: 408 ttgcaaaccggcacaataat 427 || || |||||||||||| Sbjct: 7307543 ttcacaatcggcacaataat 7307562 Score = 149 bits (75), Expect = 1e-32 Identities = 111/123 (90%) Strand = Plus / Plus Query: 440 agtcaaggaagatgcttggcagatctttgtggagcacttcactgtgatctgacaatggag 499 |||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| Sbjct: 7307915 agtcaaggaagatgcttggctgatctatgtggagcacttcactgtgatctgatgttggag 7307974 Query: 500 ttcaagaaaccaaagagtaaatgcaatgatgctgcagctgcaaggaaccgtcatcgttgt 559 || |||||||||||||||||||||| || |||||||||||||||| ||||||| |||| Sbjct: 7307975 tttaagaaaccaaagagtaaatgcagtgcaactgcagctgcaaggaatcgtcatctttgt 7308034 Query: 560 gag 562 ||| Sbjct: 7308035 gag 7308037 Score = 103 bits (52), Expect = 7e-19 Identities = 58/60 (96%) Strand = Plus / Plus Query: 561 agagccttgcagacagttgctttcctattaatcaagggcattctgccagccgtcttcatg 620 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 7308692 agagccttgcagatagttgctttcctattaatcaagggcaatctgccagccgtcttcatg 7308751 Score = 79.8 bits (40), Expect = 1e-11 Identities = 55/60 (91%) Strand = Plus / Plus Query: 166 acacacacatgaggtgcattgttcaagggaaaggagccgtgcagcttggaaagctattga 225 ||||||| || | |||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 7307218 acacacaaatcaagtgcattgctcaagggaaagaagccgtgcagcttggaaagctattga 7307277 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 620 gaatttttcttgcaccaattctgtgatgctcacac 654 |||||| |||||| ||||||||||||||| ||||| Sbjct: 7308842 gaatttctcttgcgccaattctgtgatgcccacac 7308876 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ctcatcccttctcgcctctt 77 |||||||||||||||||||| Sbjct: 25013116 ctcatcccttctcgcctctt 25013135
>emb|AL732648.3|CNS08C9N Oryza sativa chromosome 12, . BAC OSJNBb0020J15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133575 Score = 159 bits (80), Expect = 1e-35 Identities = 170/200 (85%) Strand = Plus / Plus Query: 228 agtacttgatgccctttgtggaaaaggagaaatatgaactcccaagcaaatgcagacttc 287 |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 22494 agtatttgatgccctttgtggaaaaagagaaatatgaactcccaagcaaatgtagacttc 22553 Query: 288 gtcctgaaaacgacatgtttcgggaacaagagcaacataagatccattttgatgttaacg 347 ||||| || ||||||||||||||||| ||||| |||||||| || |||||| | || | Sbjct: 22554 atcctggtaatgacatgtttcgggaacaggagcagcataagattcactttgatataaatg 22613 Query: 348 agtggcgttgtggcttctgcaagaaatcttttcgggcagaaaaatttatcgatcagcatt 407 | ||||| ||||| |||||||||||| | || || ||||| || || | |||||||||| Sbjct: 22614 aatggcgctgtggtttctgcaagaaagccttccgagcagagaagttccttgatcagcatt 22673 Query: 408 ttgcaaaccggcacaataat 427 || || |||||||||||| Sbjct: 22674 ttcacaatcggcacaataat 22693 Score = 149 bits (75), Expect = 1e-32 Identities = 111/123 (90%) Strand = Plus / Plus Query: 440 agtcaaggaagatgcttggcagatctttgtggagcacttcactgtgatctgacaatggag 499 |||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| Sbjct: 23046 agtcaaggaagatgcttggctgatctatgtggagcacttcactgtgatctgatgttggag 23105 Query: 500 ttcaagaaaccaaagagtaaatgcaatgatgctgcagctgcaaggaaccgtcatcgttgt 559 || |||||||||||||||||||||| || |||||||||||||||| ||||||| |||| Sbjct: 23106 tttaagaaaccaaagagtaaatgcagtgcaactgcagctgcaaggaatcgtcatctttgt 23165 Query: 560 gag 562 ||| Sbjct: 23166 gag 23168 Score = 103 bits (52), Expect = 7e-19 Identities = 58/60 (96%) Strand = Plus / Plus Query: 561 agagccttgcagacagttgctttcctattaatcaagggcattctgccagccgtcttcatg 620 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 23823 agagccttgcagatagttgctttcctattaatcaagggcaatctgccagccgtcttcatg 23882 Score = 79.8 bits (40), Expect = 1e-11 Identities = 55/60 (91%) Strand = Plus / Plus Query: 166 acacacacatgaggtgcattgttcaagggaaaggagccgtgcagcttggaaagctattga 225 ||||||| || | |||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 22349 acacacaaatcaagtgcattgctcaagggaaagaagccgtgcagcttggaaagctattga 22408 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 620 gaatttttcttgcaccaattctgtgatgctcacac 654 |||||| |||||| ||||||||||||||| ||||| Sbjct: 23973 gaatttctcttgcgccaattctgtgatgcccacac 24007
>gb|BT014430.1| Lycopersicon esculentum clone 133748R, mRNA sequence Length = 1338 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 611 cgtcttcatgaatttttcttgcaccaattctgtgatgctcacac 654 |||||||||||| | ||||||| ||||||||||||||||||||| Sbjct: 662 cgtcttcatgaactattcttgcgccaattctgtgatgctcacac 705 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 212 tggaaagctattgacgagtacttgatgccctttgtggaaaaggagaaatatga 264 ||||||| | |||| |||||||| ||||||||||| ||||| ||||| ||||| Sbjct: 263 tggaaagttgttgaggagtacttaatgccctttgtagaaaaagagaagtatga 315 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 377 tttcgggcagaaaaatttatcgatcagcattttg 410 |||||||| ||||||||| | ||||||||||||| Sbjct: 428 tttcgggctgaaaaatttcttgatcagcattttg 461
>gb|AC012178.5| Homo sapiens chromosome 16 clone RP11-243A14, complete sequence Length = 155951 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 176 gaggtgcattgttcaagggaaaggag 201 |||||||||||||||||||||||||| Sbjct: 90162 gaggtgcattgttcaagggaaaggag 90187
>gb|AC105924.4| Homo sapiens BAC clone RP11-706F1 from 4, complete sequence Length = 160050 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 439 tagtcaaggaagatgcttggca 460 |||||||||||||||||||||| Sbjct: 49984 tagtcaaggaagatgcttggca 49963
>dbj|AP007298.1| Lotus japonicus genomic DNA, clone:LjT02G13, TM0489b, complete sequence Length = 26494 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Minus Query: 620 gaatttttcttgcaccaattctgtgatgctcaca 653 ||||| || |||||||||||||||||||| |||| Sbjct: 25008 gaattctttttgcaccaattctgtgatgcacaca 24975
>ref|NM_125723.2| Arabidopsis thaliana nucleic acid binding / zinc ion binding AT5G63280 mRNA, complete cds Length = 1660 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 611 cgtcttcatgaatttttcttgcaccaattctgtgatgctca 651 |||||||||||| || |||| |||||||||||||||||| Sbjct: 593 cgtcttcatgaacactttttgcgccaattctgtgatgctca 633
>gb|AY133853.1| Arabidopsis thaliana clone U11672 unknown protein (At5g63280) mRNA, complete cds Length = 847 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 611 cgtcttcatgaatttttcttgcaccaattctgtgatgctca 651 |||||||||||| || |||| |||||||||||||||||| Sbjct: 574 cgtcttcatgaacactttttgcgccaattctgtgatgctca 614
>gb|AY063959.1| Arabidopsis thaliana unknown protein (At5g63280) mRNA, complete cds Length = 1188 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 611 cgtcttcatgaatttttcttgcaccaattctgtgatgctca 651 |||||||||||| || |||| |||||||||||||||||| Sbjct: 593 cgtcttcatgaacactttttgcgccaattctgtgatgctca 633
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 aatcttttcgggcagaaaaat 392 ||||||||||||||||||||| Sbjct: 1529251 aatcttttcgggcagaaaaat 1529231
>gb|AC090887.3| Mus musculus strain C57BL/6J clone RP23-404D8, complete sequence Length = 161153 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 ttcatcaaacaaagccacaca 170 ||||||||||||||||||||| Sbjct: 43237 ttcatcaaacaaagccacaca 43217
>gb|AF329945.1|AF329945 Takifugu rubripes SUN-like 1 (SUNL1), chromosome 17 open reading frame 27 (C17orf27), transcription factor SOX9 (SOX9), and somatostatin receptor 2 (SSTR2) genes, complete cds; and ubiquitin-specific-protease-3-like protein (USP3L) gene, partial cds Length = 194498 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 624 ttttcttgcaccaattctgtg 644 ||||||||||||||||||||| Sbjct: 110435 ttttcttgcaccaattctgtg 110455
>gb|AY084683.1| Arabidopsis thaliana clone 114951 mRNA, complete sequence Length = 1164 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 611 cgtcttcatgaatttttcttgcaccaattctgtgatgctca 651 |||||||||||| || |||| |||||||||||||||||| Sbjct: 593 cgtcttcatgaacactttttgcgccaattctgtgatgctca 633
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 ttcatcaaacaaagccacaca 170 ||||||||||||||||||||| Sbjct: 2485973 ttcatcaaacaaagccacaca 2485993
>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial variable region, strain 129/Sv Length = 1382053 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 ttcatcaaacaaagccacaca 170 ||||||||||||||||||||| Sbjct: 1037030 ttcatcaaacaaagccacaca 1037050 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 ttcatcaaacaaagccacaca 170 ||||||||||||||||||||| Sbjct: 791247 ttcatcaaacaaagccacaca 791267 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 ttcatcaaacaaagccacaca 170 ||||||||||||||||||||| Sbjct: 568582 ttcatcaaacaaagccacaca 568602
>ref|NM_123436.2| Arabidopsis thaliana nucleic acid binding / zinc ion binding AT5G40710 mRNA, complete cds Length = 1068 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 342 ttaacgagtggcgttgtggcttctgcaa 369 |||| |||||||||||||| |||||||| Sbjct: 366 ttaatgagtggcgttgtggattctgcaa 393
>ref|NM_001031484.1| Gallus gallus protein tyrosine phosphatase, non-receptor type 6 (PTPN6), mRNA Length = 2692 Score = 40.1 bits (20), Expect = 8.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 453 gcttggcagatctttgtggagcacttca 480 |||||||||||||| ||||||||||||| Sbjct: 843 gcttggcagatctt-gtggagcacttca 869
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 cgatcagcattttgcaaacc 416 |||||||||||||||||||| Sbjct: 75087 cgatcagcattttgcaaacc 75068
>gb|AC009394.5| Drosophila melanogaster clone BACR03J17, complete sequence Length = 199043 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gcttcgaggatgaggagctg 42 |||||||||||||||||||| Sbjct: 72047 gcttcgaggatgaggagctg 72028
>gb|AC183388.3| Pan troglodytes BAC clone CH251-53D20 from chromosome 16, complete sequence Length = 161327 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 ggatccagaattcttcatca 156 |||||||||||||||||||| Sbjct: 20732 ggatccagaattcttcatca 20713
>gb|BT025205.1| Drosophila melanogaster FI01109 full insert cDNA Length = 2146 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gcttcgaggatgaggagctg 42 |||||||||||||||||||| Sbjct: 1979 gcttcgaggatgaggagctg 1998
>emb|BX927336.18| Zebrafish DNA sequence from clone CH211-215P11 in linkage group 5, complete sequence Length = 200686 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 caggaattgcatgaagcatc 135 |||||||||||||||||||| Sbjct: 166355 caggaattgcatgaagcatc 166336
>ref|XM_384749.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04573.1) partial mRNA Length = 12609 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 aggaaccgtcatcgttgtga 561 |||||||||||||||||||| Sbjct: 9240 aggaaccgtcatcgttgtga 9259
>ref|XM_947149.1| Theileria annulata strain Ankara RNA processing protein (TA13380) partial mRNA Length = 1974 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 ttctgcaagaaatcttttcg 381 |||||||||||||||||||| Sbjct: 372 ttctgcaagaaatcttttcg 391
>gb|BT022168.1| Drosophila melanogaster IP01323 full insert cDNA Length = 609 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gcttcgaggatgaggagctg 42 |||||||||||||||||||| Sbjct: 365 gcttcgaggatgaggagctg 384
>emb|AL133378.16| Human DNA sequence from clone RP1-91B17 on chromosome 6q13-14.3 Contains part of the BAI3 gene for brain-specific angiogenesis inhibitor 3, complete sequence Length = 113826 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ttcaagaaaccaaagagtaa 519 |||||||||||||||||||| Sbjct: 90673 ttcaagaaaccaaagagtaa 90654
>gb|AC125503.3| Oryctolagus cuniculus clone LB1-115H21, complete sequence Length = 176296 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 ccagaattcttcatcaaaca 160 |||||||||||||||||||| Sbjct: 22002 ccagaattcttcatcaaaca 22021
>emb|BX321861.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 6/10 Length = 298050 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 atcagcattttgcaaaccgg 418 |||||||||||||||||||| Sbjct: 161912 atcagcattttgcaaaccgg 161931
>gb|BT025033.1| Arabidopsis thaliana At5g40710 mRNA, complete cds Length = 819 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 342 ttaacgagtggcgttgtggcttctgcaa 369 |||| |||||||||||||| |||||||| Sbjct: 311 ttaatgagtggcgttgtggattctgcaa 338
>emb|AL031154.1|SPBC1685 S.pombe chromosome II cosmid c1685 Length = 37386 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 tcatcaaacaaagccacacacaca 174 |||||| ||||||||||||||||| Sbjct: 27415 tcatcacacaaagccacacacaca 27438
>emb|AJ851665.1| Gallus gallus mRNA for hypothetical protein, clone 15p22 Length = 2692 Score = 40.1 bits (20), Expect = 8.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 453 gcttggcagatctttgtggagcacttca 480 |||||||||||||| ||||||||||||| Sbjct: 843 gcttggcagatctt-gtggagcacttca 869
>emb|AJ719433.1| Gallus gallus mRNA for hypothetical protein, clone 2e14 Length = 2700 Score = 40.1 bits (20), Expect = 8.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 453 gcttggcagatctttgtggagcacttca 480 |||||||||||||| ||||||||||||| Sbjct: 856 gcttggcagatctt-gtggagcacttca 882
>emb|BX548067.34| Zebrafish DNA sequence from clone DKEY-261O4 in linkage group 5, complete sequence Length = 181547 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 caggaattgcatgaagcatc 135 |||||||||||||||||||| Sbjct: 110661 caggaattgcatgaagcatc 110642
>emb|CR388095.8| Zebrafish DNA sequence from clone CH211-199M9 in linkage group 14, complete sequence Length = 208632 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 caggaattgcatgaagcatc 135 |||||||||||||||||||| Sbjct: 38908 caggaattgcatgaagcatc 38889
>emb|CR533430.7| Zebrafish DNA sequence from clone DKEYP-87E3 in linkage group 20 Contains two novel genes, complete sequence Length = 193255 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 caggaattgcatgaagcatc 135 |||||||||||||||||||| Sbjct: 121369 caggaattgcatgaagcatc 121350
>ref|NM_001014637.1| Drosophila melanogaster Rpb4 CG33520-PC, isoform C (Rpb4) mRNA, complete cds Length = 2317 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gcttcgaggatgaggagctg 42 |||||||||||||||||||| Sbjct: 2055 gcttcgaggatgaggagctg 2074
>ref|NM_001014635.1| Drosophila melanogaster Rpb4 CG33520-PA, isoform A (Rpb4) mRNA, complete cds Length = 2377 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gcttcgaggatgaggagctg 42 |||||||||||||||||||| Sbjct: 2115 gcttcgaggatgaggagctg 2134
>ref|NM_001014634.1| Drosophila melanogaster Rpb4 CG33520-PE, isoform E (Rpb4) mRNA, complete cds Length = 2362 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gcttcgaggatgaggagctg 42 |||||||||||||||||||| Sbjct: 2100 gcttcgaggatgaggagctg 2119
>ref|NM_001014636.1| Drosophila melanogaster Rpb4 CG33520-PB, isoform B (Rpb4) mRNA, complete cds Length = 2422 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gcttcgaggatgaggagctg 42 |||||||||||||||||||| Sbjct: 2160 gcttcgaggatgaggagctg 2179
>ref|NM_001014633.1| Drosophila melanogaster Rpb4 CG33520-PD, isoform D (Rpb4) mRNA, complete cds Length = 732 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gcttcgaggatgaggagctg 42 |||||||||||||||||||| Sbjct: 470 gcttcgaggatgaggagctg 489
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 ccagaattcttcatcaaaca 160 |||||||||||||||||||| Sbjct: 1451448 ccagaattcttcatcaaaca 1451467
>gb|BT023309.1| Drosophila melanogaster IP02340 full insert cDNA Length = 577 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gcttcgaggatgaggagctg 42 |||||||||||||||||||| Sbjct: 407 gcttcgaggatgaggagctg 426
>gb|BT023308.1| Drosophila melanogaster IP02337 full insert cDNA Length = 581 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gcttcgaggatgaggagctg 42 |||||||||||||||||||| Sbjct: 423 gcttcgaggatgaggagctg 442
>gb|BT022166.1| Drosophila melanogaster IP01330 full insert cDNA Length = 2147 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gcttcgaggatgaggagctg 42 |||||||||||||||||||| Sbjct: 1979 gcttcgaggatgaggagctg 1998
>gb|AC092178.4| Homo sapiens BAC clone RP11-627I23 from 2, complete sequence Length = 166299 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 gttgtggcttctgcaagaaa 373 |||||||||||||||||||| Sbjct: 110164 gttgtggcttctgcaagaaa 110145
>gb|AC093378.5| Homo sapiens BAC clone RP11-296O15 from 2, complete sequence Length = 63849 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cctttgtggaaaaggagaaa 259 |||||||||||||||||||| Sbjct: 53725 cctttgtggaaaaggagaaa 53706
>gb|AF544018.1| Drosophila melanogaster ADA2A-2 mRNA, complete cds, alternatively spliced Length = 2335 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gcttcgaggatgaggagctg 42 |||||||||||||||||||| Sbjct: 2055 gcttcgaggatgaggagctg 2074
>gb|AF544017.1| Drosophila melanogaster ADA2A-1 mRNA, complete cds, alternatively spliced Length = 2380 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gcttcgaggatgaggagctg 42 |||||||||||||||||||| Sbjct: 2100 gcttcgaggatgaggagctg 2119
>emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306_H03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121563 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ctcatcccttctcgcctctt 77 |||||||||||||||||||| Sbjct: 46564 ctcatcccttctcgcctctt 46545
>dbj|AK118874.1| Arabidopsis thaliana At5g40710 mRNA for putative zinc finger protein, complete cds, clone: RAFL21-20-H14 Length = 1038 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 342 ttaacgagtggcgttgtggcttctgcaa 369 |||| |||||||||||||| |||||||| Sbjct: 366 ttaatgagtggcgttgtggattctgcaa 393
>dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNF13 Length = 85992 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 342 ttaacgagtggcgttgtggcttctgcaa 369 |||| |||||||||||||| |||||||| Sbjct: 70404 ttaatgagtggcgttgtggattctgcaa 70431
>dbj|AK065760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039D10, full insert sequence Length = 2197 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ctcatcccttctcgcctctt 77 |||||||||||||||||||| Sbjct: 12 ctcatcccttctcgcctctt 31
>gb|AE003721.3| Drosophila melanogaster chromosome 3R, section 59 of 118 of the complete sequence Length = 224889 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gcttcgaggatgaggagctg 42 |||||||||||||||||||| Sbjct: 92541 gcttcgaggatgaggagctg 92522
>gb|AC157656.3| Mus musculus BAC clone RP23-406A5 from chromosome 13, complete sequence Length = 189500 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aattcttcatcaaacaaagc 164 |||||||||||||||||||| Sbjct: 50197 aattcttcatcaaacaaagc 50178
>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146686 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ctcatcccttctcgcctctt 77 |||||||||||||||||||| Sbjct: 22257 ctcatcccttctcgcctctt 22238
>gb|AC011389.7| Homo sapiens chromosome 5 clone CTB-174D11, complete sequence Length = 231746 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 aggagctgggctaacctcccccac 58 ||||||||||||||||| |||||| Sbjct: 202534 aggagctgggctaacctgccccac 202557 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,394,151 Number of Sequences: 3902068 Number of extensions: 7394151 Number of successful extensions: 119707 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 119416 Number of HSP's gapped (non-prelim): 287 length of query: 654 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 631 effective length of database: 17,143,297,704 effective search space: 10817420851224 effective search space used: 10817420851224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)