>SYC_SCHPO (Q09860) Probable cysteinyl-tRNA synthetase (EC 6.1.1.16)|
           (Cysteine--tRNA ligase) (CysRS)
          Length = 754

 Score = 33.5 bits (75), Expect = 0.53
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +1

Query: 4   ARGAGGWHHDCALW--ALGGDPVPFRRGGHE---PHQDSDGGGMEHRGGGVQCPWSVHGL 168
           ++G  GWH +C++   AL G  +    GG +   PH D++   +        CP  V+  
Sbjct: 340 SKGRPGWHIECSVMASALLGSNIDIHSGGIDLAFPHHDNE---LAQSEAYFDCPQWVNYF 396

Query: 169 FHPTHRH 189
           FH  H H
Sbjct: 397 FHAGHLH 403

>SEM6D_PONPY (Q5R7F5) Semaphorin-6D precursor|
          Length = 1017

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 74  GEVAMSHTKTRMEEAWSIEEVAFNVPGLSMDCFIPPTDIKSGSVSETVELP 226
           G++ M+H    ++   S+ EV   VP      + PP+ +   S ++ V++P
Sbjct: 842 GDIQMAHQNLMLDPMGSMSEVPPKVPNREASLYSPPSTLPRNSPTKRVDVP 892

>SEM6D_HUMAN (Q8NFY4) Semaphorin-6D precursor|
          Length = 1073

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 74   GEVAMSHTKTRMEEAWSIEEVAFNVPGLSMDCFIPPTDIKSGSVSETVELP 226
            G++ M+H    ++   S+ EV   VP      + PP+ +   S ++ V++P
Sbjct: 898  GDIQMAHQNLMLDPMGSMSEVPPKVPNREASLYSPPSTLPRNSPTKRVDVP 948

>MOVP_ACLSA (P54892) Putative movement protein (50.4 kDa protein) (ORF2)|
          Length = 457

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 49  LGGDPVPFRRGGHEPHQDSDGGGMEHRGGGVQCPWSVHG-LFHPTHR 186
           LG + VP R GG E H  S+GGG+    GG +   ++   +F P ++
Sbjct: 403 LGTNRVPGRAGGGEIHGGSEGGGVIQSEGGSRFDQNIQDYIFGPEYK 449

>CHSS3_HUMAN (Q70JA7) Chondroitin sulfate synthase 3 (EC 2.4.1.175)|
           (Glucuronosyl-N-acetylgalactosaminyl-proteoglycan
           4-beta-N-acetylgalactosaminyltransferase II)
           (Chondroitin synthase 2)
           (N-acetylgalactosaminyl-proteoglycan
           3-beta-glucuronosyltransferase
          Length = 882

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 94  HQDSDGGGMEHRGGGVQCPWS--VHGLFHPTHRH 189
           H+D + G    R GG QC WS  +  LFH  + H
Sbjct: 340 HEDVEVGRCVRRFGGTQCVWSYEMQQLFHENYEH 373

>Y3769_VIBCH (Q9KKY1) Hypothetical protein VCA0969|
          Length = 282

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
 Frame = +1

Query: 52  GGDPVPFRRGGHEPHQDSDGGGMEHRGGGVQCPWSVHGLFH---------PTHRHQVWI 201
           G + + +   GH  H+D  G   E R GG Q   + HG+ H           H  Q+WI
Sbjct: 63  GIETLTYMLQGHFQHRDQMGNVGELRSGGAQWMAAGHGVIHSEMPIMQEGQLHGFQIWI 121

>IRF3_MOUSE (P70671) Interferon regulatory factor 3 (IRF-3)|
          Length = 419

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +1

Query: 28  HDCALWALGGDPVPFRRGG--HEPHQDSDGGGMEHRGGGVQCPWSVHGLFHPTHRHQVWI 201
           H  A WALG + +P    G   E H+D DG   + R         + G  H + R+ +W 
Sbjct: 281 HSHAFWALGEELLPDSGRGPDGEVHKDKDGAVFDLRPFVADLIAFMEGSGH-SPRYTLWF 339

Query: 202 C**NRGAPSWREEQVW 249
           C        W ++Q W
Sbjct: 340 C----MGEMWPQDQPW 351

>G3P_HAEIN (P44304) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)|
           (GAPDH)
          Length = 339

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
 Frame = -3

Query: 557 RD*KPFFITGGLPQGYSGQDLV-NASC---CFLPVHRGHFEFPKAKSSLDLFLSYTTHHQ 390
           +D  P F+ G     Y+GQD+V NASC   C  P+ R   E    K  L      TT H 
Sbjct: 124 KDATPMFVRGVNFNAYAGQDIVSNASCTTNCLAPLARVVHETFGIKDGL-----MTTVHA 178

Query: 389 SVAMKRSKYELG*KRIAVFRYEFPSMLARRHPSSPARQLWRDGHGEDQTCSSRHEGAPR 213
           + A +++                           P+ + WR G G  Q       GA +
Sbjct: 179 TTATQKT------------------------VDGPSAKDWRGGRGASQNIIPSSTGAAK 213

>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = +1

Query: 7   RGAGGWHHDCALWALGGDPVPFRRGGHEPHQDSDGGGMEHRGGG 138
           RG GG +        GG    +  GG E      GGG   RGGG
Sbjct: 96  RGGGGGYRSGGGGGYGGGGGGYGGGGREGGYSGGGGGYSSRGGG 139

>SEM6D_MOUSE (Q76KF0) Semaphorin-6D precursor|
          Length = 1073

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 74   GEVAMSHTKTRMEEAWSIEEVAFNVPGLSMDCFIPPTDIKSGSVSETVELP 226
            GE+ M+H    ++    + EV   VP      + PP+ +   S ++ V++P
Sbjct: 898  GEIHMAHQTLMLDPVGPMAEVPPKVPNREASLYSPPSTLPRNSPTKRVDVP 948

>ALK_MOUSE (P97793) ALK tyrosine kinase receptor precursor (EC 2.7.10.1)|
            (Anaplastic lymphoma kinase) (CD246 antigen)
          Length = 1621

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 1    SARGAGGWHHDCALWALGGDPVPFRRGGHEPHQDSDGGGMEHRGG 135
            +A G GGW+ + +L   G   +    GGH   Q     G E RGG
Sbjct: 880  AAGGGGGWNDNTSLLWAGKSLLEGAAGGHSCPQAMKKWGWETRGG 924

>TYY1_MOUSE (Q00899) Transcriptional repressor protein YY1 (Yin and yang 1)|
           (YY-1) (Delta transcription factor) (NF-E1) (UCR-motif
           DNA-binding protein)
          Length = 414

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 88  EPHQDSDGGGMEHRGGGVQCPWSVHGLFHPTHRH 189
           E   D DGGG +H GGG     + H   H  H H
Sbjct: 47  EDDDDEDGGGGDHGGGGGGHGHAGHHHHHHHHHH 80

>TYY1_HUMAN (P25490) Transcriptional repressor protein YY1 (Yin and yang 1)|
           (YY-1) (Delta transcription factor) (NF-E1)
          Length = 414

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 88  EPHQDSDGGGMEHRGGGVQCPWSVHGLFHPTHRH 189
           E   D DGGG +H GGG       H   H  H H
Sbjct: 47  EDDDDEDGGGGDHGGGGGHGHAGHHHHHHHHHHH 80

>GRPA_MEDFA (Q09134) Abscisic acid and environmental stress-inducible protein|
          Length = 159

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 10  GAGGWHHDCALWALGGDPVPFRRGGHEPHQDSDGGGMEHRGGGVQCPWSVHG 165
           G GG++H    +  GG       GG+     + GGG  + GGG  C +  HG
Sbjct: 90  GGGGYNHGGGGYNNGGGGYNHGGGGYNGGGYNHGGGGYNHGGG-GCQYHCHG 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,059,404
Number of Sequences: 219361
Number of extensions: 2397385
Number of successful extensions: 6806
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6793
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)