ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags30n01 |
|---|---|
| Clone Library Name | barley_pub |
>SEC72_SCHPO (Q9P7V5) Protein transport protein sec72| Length = 1822 Score = 37.0 bits (84), Expect = 0.038 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Frame = +1 Query: 94 KCITQLLLLGAIDSI--QKRYWSKLQATQQIAIMDILLSLLEFASSYNSPSNLRTRMHHI 267 KCI QLLL+ + + + ++ + + I + +FA +N +LR + ++ Sbjct: 1624 KCILQLLLISIVAELLDNEEVFNHIPHEHVLKITVAIYDSWQFARKFNEDKSLRITLLNV 1683 Query: 268 PPERPPLNLLRQELAGTTIYLEILHK 345 + NLLRQE A +Y+ +L + Sbjct: 1684 GFMKQLPNLLRQETASALLYITLLFR 1709
>SEC7_YEAST (P11075) Protein transport protein SEC7| Length = 2009 Score = 35.0 bits (79), Expect = 0.14 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 2/84 (2%) Frame = +1 Query: 94 KCITQLLLLGAIDSI--QKRYWSKLQATQQIAIMDILLSLLEFASSYNSPSNLRTRMHHI 267 KC+ QLL++ ++ + + + + + I I +L EF+ +N LRTR+ Sbjct: 1821 KCVLQLLMIELLNELFENEDFAHCIPYKEAIRITRLLEKSYEFSRDFNEDYGLRTRLVEA 1880 Query: 268 PPERPPLNLLRQELAGTTIYLEIL 339 NLL+QE + + L+I+ Sbjct: 1881 RVVDKIPNLLKQETSAAAVLLDIM 1904
>SEC71_SCHPO (Q9UT02) Protein transport protein sec71| Length = 1811 Score = 34.7 bits (78), Expect = 0.19 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 8/92 (8%) Frame = +1 Query: 76 METVRSKCITQLLLLGAIDSI--QKRYWSKLQATQQIAIMDILLSLLEFASSYNSPSNLR 249 ++++ KC QLL+L + + + + + + ++DIL EFA S+NS +R Sbjct: 1612 LKSIVVKCTLQLLMLNCLWELFHSDNMLTNIPKRKMVKLLDILKQSWEFAESFNSDFEIR 1671 Query: 250 TR------MHHIPPERPPLNLLRQELAGTTIY 327 + + H+P NLL QE +Y Sbjct: 1672 AKILSSGIVEHMP------NLLSQEALCAKLY 1697
>DDX25_RAT (Q9QY16) ATP-dependent RNA helicase DDX25 (EC 3.6.1.-) (DEAD box| protein 25) (Gonadotropin-regulated testicular RNA helicase) Length = 483 Score = 33.9 bits (76), Expect = 0.32 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 10/107 (9%) Frame = +1 Query: 28 PDADGADKTEEE--ENPMMETVRSKCITQLLLLGAIDS------IQKRYWSKLQATQQIA 183 P+ DG+ TEE+ E+ +++ + + +L+ ++S +QK S L + + Sbjct: 41 PNIDGSLNTEEDDDEDDVVDLAANSLLNKLIRQSLVESSHRVEVLQKDPSSPLYSVKTFE 100 Query: 184 IMDILLSLLE--FASSYNSPSNLRTRMHHIPPERPPLNLLRQELAGT 318 + + LL+ +A +N PS ++ + PP NL+ Q +GT Sbjct: 101 ELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGT 147
>DDX25_MOUSE (Q9QY15) ATP-dependent RNA helicase DDX25 (EC 3.6.1.-) (DEAD box| protein 25) (Gonadotropin-regulated testicular RNA helicase) Length = 484 Score = 32.7 bits (73), Expect = 0.71 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 11/108 (10%) Frame = +1 Query: 28 PDADGADKTEEE---ENPMMETVRSKCITQLLLLGAIDS------IQKRYWSKLQATQQI 180 P+ DG+ TE++ E+ +++ + + +L+ I+S +QK S L + + Sbjct: 41 PNIDGSLNTEDDDDDEDDVVDLAANSLLNKLIRQSLIESSHRVEVLQKDPSSPLYSVKTF 100 Query: 181 AIMDILLSLLE--FASSYNSPSNLRTRMHHIPPERPPLNLLRQELAGT 318 + + LL+ +A +N PS ++ + PP NL+ Q +GT Sbjct: 101 EELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGT 148
>DD19A_MOUSE (Q61655) ATP-dependent RNA helicase DDX19A (EC 3.6.1.-) (DEAD box| protein 19A) (DEAD box RNA helicase DEAD5) (mDEAD5) (Eukaryotic translation initiation factor 4A-related sequence 1) Length = 478 Score = 32.7 bits (73), Expect = 0.71 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 6/98 (6%) Frame = +1 Query: 43 ADKTEEEENP--MMETVRSKCITQLLL--LGAIDSIQKRYWSKLQATQQIAIMDILLSLL 210 A+KTEEEE +++ +K I L+ ++ +Q+ S L + + + + LL Sbjct: 44 AEKTEEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPSSPLYSVKSFEELRLKPQLL 103 Query: 211 E--FASSYNSPSNLRTRMHHIPPERPPLNLLRQELAGT 318 + +A +N PS ++ + PP NL+ Q +GT Sbjct: 104 QGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGT 141
>DD19B_HUMAN (Q9UMR2) ATP-dependent RNA helicase DDX19B (EC 3.6.1.-) (DEAD box| protein 19B) (DEAD box RNA helicase DEAD5) Length = 479 Score = 32.0 bits (71), Expect = 1.2 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 14/111 (12%) Frame = +1 Query: 28 PDADGA--------DKTEEEENP--MMETVRSKCITQLLL--LGAIDSIQKRYWSKLQAT 171 PD +GA +KT+EEE +++ +K I L+ ++ +Q+ S L + Sbjct: 32 PDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSV 91 Query: 172 QQIAIMDILLSLLE--FASSYNSPSNLRTRMHHIPPERPPLNLLRQELAGT 318 + + + LL+ +A +N PS ++ + PP NL+ Q +GT Sbjct: 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGT 142
>DBP5_DEBHA (Q6BRE4) ATP-dependent RNA helicase DBP5 (EC 3.6.1.-)| Length = 493 Score = 31.6 bits (70), Expect = 1.6 Identities = 22/104 (21%), Positives = 45/104 (43%) Frame = +1 Query: 7 PPSPAKTPDADGADKTEEEENPMMETVRSKCITQLLLLGAIDSIQKRYWSKLQATQQIAI 186 P S ++ AD D T+ EE + + L + + +++ +++ + Sbjct: 51 PASTEESKPADVKDATKSEEQEAESNLIKSSYEVKVKLADLQADPNSPLYSVKSFEELGL 110 Query: 187 MDILLSLLEFASSYNSPSNLRTRMHHIPPERPPLNLLRQELAGT 318 LL L +A +N PS ++ + + PP N++ Q +GT Sbjct: 111 SSELLKGL-YAMKFNKPSKIQEKALPLLISNPPKNMIGQSQSGT 153
>GGA1_HUMAN (Q9UJY5) ADP-ribosylation factor-binding protein GGA1| (Golgi-localized, gamma ear-containing, ARF-binding protein 1) (Gamma-adaptin-related protein 1) Length = 639 Score = 31.2 bits (69), Expect = 2.1 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Frame = +1 Query: 139 QKRYWSKLQATQQIAIMDILLSLLEFASSYNSPSNLRTRMHHI---PPERPPLNLLRQE- 306 Q+ W K Q T ++ + D L +SS +SPS+ T + H P RPP + E Sbjct: 440 QQVRWEKQQPTPRLTLRD----LQNKSSSCSSPSSSATSLLHTVSPEPPRPPQQPVPTEL 495 Query: 307 -LAGTTIYLEILHKSTV 354 LA T+ LE + S + Sbjct: 496 SLASITVPLESIKPSNI 512
>DD19A_HUMAN (Q9NUU7) ATP-dependent RNA helicase DDX19A (EC 3.6.1.-) (DEAD box| protein 19A) (DDX19-like protein) Length = 478 Score = 31.2 bits (69), Expect = 2.1 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 6/98 (6%) Frame = +1 Query: 43 ADKTEEEENP--MMETVRSKCITQLLL--LGAIDSIQKRYWSKLQATQQIAIMDILLSLL 210 A+KT+EEE +++ +K I L+ ++ +Q+ S L + + + + LL Sbjct: 44 AEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLL 103 Query: 211 E--FASSYNSPSNLRTRMHHIPPERPPLNLLRQELAGT 318 + +A +N PS ++ + PP NL+ Q +GT Sbjct: 104 QGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGT 141
>LAMB1_HUMAN (P07942) Laminin beta-1 chain precursor (Laminin B1 chain)| Length = 1786 Score = 30.4 bits (67), Expect = 3.5 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 13/167 (7%) Frame = +1 Query: 31 DADGADKTEEEENPMMETVRSKCITQLLLLGAIDSIQKRYWSKLQATQQIAIMDILLSLL 210 +A+ D T +E +E +++ I GA+DSI K + L+A +++ S Sbjct: 1291 EAESLDNTVKELAEQLEFIKNSDIR-----GALDSITKYFQMSLEAEERVN-----ASTT 1340 Query: 211 EFASSYNSPSNLRTRMHHIPPERPPLNLLRQ--------ELAGTTIYLEILHKSTV---- 354 E S+ + +R R+ + ER +Q ELAG L++ + + Sbjct: 1341 EPNSTVEQSALMRDRVEDVMMERESQFKEKQEEQARLLDELAGKLQSLDLSAAAEMTCGT 1400 Query: 355 HNGANGSSEETNGSGVESNQQE-KLKSLAEGKLVSFCGNILKEASDL 492 GA+ S E G +++ E K G LV+ N ++A DL Sbjct: 1401 PPGASCSETECGGPNCRTDEGERKCGGPGCGGLVTVAHNAWQKAMDL 1447
>TRPB_BLOFL (Q7VR00) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 398 Score = 30.4 bits (67), Expect = 3.5 Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 6/105 (5%) Frame = +1 Query: 181 AIMDILLSLLEFASSYNSPSNLRTRMHHIPPERPPLNLLRQELAGTTIYLEILHKSTVHN 360 A++ + +E + + + +HH PL L + +GT L + + +H Sbjct: 24 ALIQLEKEFIEAMKDISFQTTFKNLLHHYAGRPTPLTLCQNLTSGTCSKLYLKREDLLHG 83 Query: 361 GANGSSEETNGSGVESNQQEKLKSLAE------GKLVSFCGNILK 477 G++ + + G + + + K + +AE G VS ++LK Sbjct: 84 GSH-KTNQVLGQALLAKRMHKKEIIAETGAGQHGVAVSIASSLLK 127
>Y395_MYCGE (P47635) Hypothetical lipoprotein MG395 precursor| Length = 524 Score = 30.0 bits (66), Expect = 4.6 Identities = 16/55 (29%), Positives = 26/55 (47%) Frame = +1 Query: 328 LEILHKSTVHNGANGSSEETNGSGVESNQQEKLKSLAEGKLVSFCGNILKEASDL 492 +E + ST N A +E + G E NQQ K++ + F + + E SD+ Sbjct: 37 IEEKNDSTTDNNATPFKDEQSDQGTEVNQQPKVEQKVYNRNFKFNTSFIPEESDI 91
>NOTCH_DROME (P07207) Neurogenic locus Notch protein precursor| Length = 2703 Score = 30.0 bits (66), Expect = 4.6 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 13/103 (12%) Frame = +1 Query: 262 HIPPERPPLNLLRQELAGTTI----YLEILHKSTVHNGANGSSEET-NGSGVESNQQEKL 426 H+P L++ Q + G+ +++ + TV + NG + N SG +SNQ K Sbjct: 2139 HVPRSPQMLSMTPQAMIGSPPPGQQQPQLITQPTVISAGNGGNNGNGNASGKQSNQTAKQ 2198 Query: 427 KSLAEGKLV--------SFCGNILKEASDLQPSNGETASADIH 531 K+ + KL+ G++ ++AS + S +A+++ Sbjct: 2199 KAAKKAKLIEGSPDNGLDATGSLRRKASSKKTSAASKKAANLN 2241
>PRP31_MOUSE (Q8CCF0) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) (U4/U6 snRNP 61 kDa protein) (Protein 61K) Length = 499 Score = 29.6 bits (65), Expect = 6.0 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 3/108 (2%) Frame = +1 Query: 31 DADGADKTEEEENPMMETVRSKCITQLLLLG-AIDSIQKRYWSKLQATQQIAIMDILLSL 207 + +G EEEE P +E V+ + TQL L G ++ SI K + SK+ A +I++ + Sbjct: 17 EEEGGSYGEEEEEPAIEDVQEE--TQLDLSGDSVKSIAKLWDSKMFA-------EIMMKI 67 Query: 208 LEFASSYNSPSNLRTRMHHIPPER--PPLNLLRQELAGTTIYLEILHK 345 E+ S + S + + P R N L E+ L I+HK Sbjct: 68 EEYISKQANASEVMGPVEAAPEYRVIVDANNLTVEIENE---LNIIHK 112
>VGB_BPAL3 (P31278) Scaffolding protein B (GPB)| Length = 117 Score = 29.3 bits (64), Expect = 7.9 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Frame = +1 Query: 289 NLLRQELAGTTIYLEILHKSTVHNGA--NGSSEETNGSGVESNQQEKLKSLAEGK 447 NL + ++GT +S NGA NGSSE+ SG E NQ S+++ + Sbjct: 8 NLSEERISGT-------QQSETRNGAPVNGSSEQQGTSGTEPNQLRFQSSVSDSE 55
>SEL1L_RAT (Q80Z70) Sel-1 homolog precursor (Suppressor of lin-12-like| protein) (Sel-1L) Length = 794 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Frame = +1 Query: 391 GSGVESNQQEKLK------SLAEGKLVSFCGNILKEASDLQPSNGETASADIHRVLDLRA 552 G GVE N Q + ++F G + E SD+ P + ETA + D+ Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446 Query: 553 P 555 P Sbjct: 447 P 447
>SEL1L_MESAU (Q9ESM7) Sel-1 homolog precursor (Suppressor of lin-12-like| protein) (Sel-1L) Length = 794 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Frame = +1 Query: 391 GSGVESNQQEKLK------SLAEGKLVSFCGNILKEASDLQPSNGETASADIHRVLDLRA 552 G GVE N Q + ++F G + E SD+ P + ETA + D+ Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446 Query: 553 P 555 P Sbjct: 447 P 447
>SEL1L_HUMAN (Q9UBV2) Sel-1 homolog precursor (Suppressor of lin-12-like| protein) (Sel-1L) Length = 794 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Frame = +1 Query: 391 GSGVESNQQEKLK------SLAEGKLVSFCGNILKEASDLQPSNGETASADIHRVLDLRA 552 G GVE N Q + ++F G + E SD+ P + ETA + D+ Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446 Query: 553 P 555 P Sbjct: 447 P 447
>SEL1L_MOUSE (Q9Z2G6) Sel-1 homolog precursor (Suppressor of lin-12-like| protein) (Sel-1L) Length = 790 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Frame = +1 Query: 391 GSGVESNQQEKLK------SLAEGKLVSFCGNILKEASDLQPSNGETASADIHRVLDLRA 552 G GVE N Q + ++F G + E SD+ P + ETA + D+ Sbjct: 383 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 442 Query: 553 P 555 P Sbjct: 443 P 443
>CSR2_YEAST (Q12734) Transcription factor CSR2 (CHS5 SPA2 rescue protein 2)| Length = 1121 Score = 24.6 bits (52), Expect(2) = 9.2 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 246 SDKDAPYTARKATTKSSSPGASWNYY 323 S K P T +AT+ S+SP +S +YY Sbjct: 946 SSKVLPPTFEEATSVSASPRSSVSYY 971 Score = 22.7 bits (47), Expect(2) = 9.2 Identities = 8/30 (26%), Positives = 17/30 (56%) Frame = +1 Query: 346 STVHNGANGSSEETNGSGVESNQQEKLKSL 435 ST+H S+ +NG+ + Q+++ + L Sbjct: 994 STLHPKTTAVSDSSNGAPIRDQQEQQARPL 1023 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.310 0.128 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,906,010 Number of Sequences: 219361 Number of extensions: 1487722 Number of successful extensions: 3024 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2945 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3019 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
