| Clone Name | bags31b11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK120584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136I05, full insert sequence Length = 1373 Score = 434 bits (219), Expect = e-118 Identities = 358/403 (88%), Gaps = 1/403 (0%) Strand = Plus / Plus Query: 5 caccttcatacctgtagnaaaacggagagggccttcaggttctccactatgaagttggac 64 ||||||||||||||||| | ||||||||||| ||||| || ||||||||||||||||||| Sbjct: 651 caccttcatacctgtag-agaacggagagggtcttcaagtcctccactatgaagttggac 709 Query: 65 agaaatatgaacctcactttgattacttccatgatgatttcaacaccaaaaatgggggcc 124 |||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||| | Sbjct: 710 agaagtatgaacctcacttcgattacttccatgatgaattcaacaccaaaaacggggggc 769 Query: 125 agcgcatagccactgttcttatgtacctttcggatgttgaagagggcggtgagaccgtgt 184 |||| ||||| ||| |||||||||| ||||| |||||||||||||| |||||||| | | Sbjct: 770 agcgtatagcaactcttcttatgtatctttctgatgttgaagagggtggtgagactattt 829 Query: 185 ttccttctgctaaagttaatagcagctcaataccattttataatgagctgtctgaatgtg 244 | || ||| |||||| ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct: 830 tcccctcttctaaagctaacagcagctcatcaccattttataatgagctgtctgaatgtg 889 Query: 245 caaaacggggtatatctgtcaaaccgaagatgggagatgcattacttttctggagcatga 304 | || |||| | |||||||||| |||||||||||||| || |||||||||||||||| Sbjct: 890 ctaagaagggtttggctgtcaaacccaagatgggagatgctttgcttttctggagcatga 949 Query: 305 ggcctgatggaaccctggatcccacaagcctccatggtggatgtccagtgataaaaggtg 364 |||||||||| | ||||| |||||||||| ||||||||||||||||||||||||||| Sbjct: 950 ggcctgatgggtctttggatgccacaagccttcatggtggatgtccagtgataaaaggta 1009 Query: 365 acaaatggtcatctacaaagtggattcgtgttcatgagtacaa 407 ||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 1010 acaaatggtcatcgacaaagtggatgcgtgttcatgagtacaa 1052
>ref|NM_197179.1| Oryza sativa (japonica cultivar-group) putative prolyl 4-hydroxylase, alpha subunit (OSJNBa0017E08.15), mRNA Length = 1032 Score = 331 bits (167), Expect = 1e-87 Identities = 297/339 (87%), Gaps = 1/339 (0%) Strand = Plus / Plus Query: 5 caccttcatacctgtagnaaaacggagagggccttcaggttctccactatgaagttggac 64 ||||||||||||||||| | ||||||||||| ||||| || ||||||||||||||||||| Sbjct: 558 caccttcatacctgtag-agaacggagagggtcttcaagtcctccactatgaagttggac 616 Query: 65 agaaatatgaacctcactttgattacttccatgatgatttcaacaccaaaaatgggggcc 124 |||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||| | Sbjct: 617 agaagtatgaacctcacttcgattacttccatgatgaattcaacaccaaaaacggggggc 676 Query: 125 agcgcatagccactgttcttatgtacctttcggatgttgaagagggcggtgagaccgtgt 184 |||| ||||| ||| |||||||||| ||||| |||||||||||||| |||||||| | | Sbjct: 677 agcgtatagcaactcttcttatgtatctttctgatgttgaagagggtggtgagactattt 736 Query: 185 ttccttctgctaaagttaatagcagctcaataccattttataatgagctgtctgaatgtg 244 | || ||| |||||| ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct: 737 tcccctcttctaaagctaacagcagctcatcaccattttataatgagctgtctgaatgtg 796 Query: 245 caaaacggggtatatctgtcaaaccgaagatgggagatgcattacttttctggagcatga 304 | || |||| | |||||||||| |||||||||||||| || |||||||||||||||| Sbjct: 797 ctaagaagggtttggctgtcaaacccaagatgggagatgctttgcttttctggagcatga 856 Query: 305 ggcctgatggaaccctggatcccacaagcctccatggtg 343 |||||||||| | ||||| |||||||||| ||||||| Sbjct: 857 ggcctgatgggtctttggatgccacaagccttcatggtg 895
>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete sequence Length = 136120 Score = 161 bits (81), Expect = 3e-36 Identities = 114/125 (91%) Strand = Plus / Minus Query: 25 aacggagagggccttcaggttctccactatgaagttggacagaaatatgaacctcacttt 84 ||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||| Sbjct: 38499 aacggagagggtcttcaagtcctccactatgaagttggacagaagtatgaacctcacttc 38440 Query: 85 gattacttccatgatgatttcaacaccaaaaatgggggccagcgcatagccactgttctt 144 ||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||| ||||| Sbjct: 38439 gattacttccatgatgaattcaacaccaaaaacggggggcagcgtatagcaactcttctt 38380 Query: 145 atgta 149 ||||| Sbjct: 38379 atgta 38375 Score = 157 bits (79), Expect = 4e-35 Identities = 160/187 (85%) Strand = Plus / Minus Query: 157 gatgttgaagagggcggtgagaccgtgtttccttctgctaaagttaatagcagctcaata 216 |||||||||||||| |||||||| | || || ||| |||||| ||| ||||||||| | Sbjct: 38279 gatgttgaagagggtggtgagactattttcccctcttctaaagctaacagcagctcatca 38220 Query: 217 ccattttataatgagctgtctgaatgtgcaaaacggggtatatctgtcaaaccgaagatg 276 ||||||||||||||||||||||||||||| || |||| | |||||||||| |||||| Sbjct: 38219 ccattttataatgagctgtctgaatgtgctaagaagggtttggctgtcaaacccaagatg 38160 Query: 277 ggagatgcattacttttctggagcatgaggcctgatggaaccctggatcccacaagcctc 336 |||||||| || |||||||||||||||||||||||||| | ||||| |||||||||| Sbjct: 38159 ggagatgctttgcttttctggagcatgaggcctgatgggtctttggatgccacaagcctt 38100 Query: 337 catggtg 343 ||||||| Sbjct: 38099 catggtg 38093 Score = 111 bits (56), Expect = 2e-21 Identities = 65/68 (95%) Strand = Plus / Minus Query: 340 ggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggattcgtgttcat 399 |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| Sbjct: 37998 ggtggatgtccagtgataaaaggtaacaaatggtcatcgacaaagtggatgcgtgttcat 37939 Query: 400 gagtacaa 407 |||||||| Sbjct: 37938 gagtacaa 37931
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 161 bits (81), Expect = 3e-36 Identities = 114/125 (91%) Strand = Plus / Plus Query: 25 aacggagagggccttcaggttctccactatgaagttggacagaaatatgaacctcacttt 84 ||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||| Sbjct: 18468194 aacggagagggtcttcaagtcctccactatgaagttggacagaagtatgaacctcacttc 18468253 Query: 85 gattacttccatgatgatttcaacaccaaaaatgggggccagcgcatagccactgttctt 144 ||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||| ||||| Sbjct: 18468254 gattacttccatgatgaattcaacaccaaaaacggggggcagcgtatagcaactcttctt 18468313 Query: 145 atgta 149 ||||| Sbjct: 18468314 atgta 18468318 Score = 157 bits (79), Expect = 4e-35 Identities = 160/187 (85%) Strand = Plus / Plus Query: 157 gatgttgaagagggcggtgagaccgtgtttccttctgctaaagttaatagcagctcaata 216 |||||||||||||| |||||||| | || || ||| |||||| ||| ||||||||| | Sbjct: 18468414 gatgttgaagagggtggtgagactattttcccctcttctaaagctaacagcagctcatca 18468473 Query: 217 ccattttataatgagctgtctgaatgtgcaaaacggggtatatctgtcaaaccgaagatg 276 ||||||||||||||||||||||||||||| || |||| | |||||||||| |||||| Sbjct: 18468474 ccattttataatgagctgtctgaatgtgctaagaagggtttggctgtcaaacccaagatg 18468533 Query: 277 ggagatgcattacttttctggagcatgaggcctgatggaaccctggatcccacaagcctc 336 |||||||| || |||||||||||||||||||||||||| | ||||| |||||||||| Sbjct: 18468534 ggagatgctttgcttttctggagcatgaggcctgatgggtctttggatgccacaagcctt 18468593 Query: 337 catggtg 343 ||||||| Sbjct: 18468594 catggtg 18468600 Score = 111 bits (56), Expect = 2e-21 Identities = 65/68 (95%) Strand = Plus / Plus Query: 340 ggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggattcgtgttcat 399 |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| Sbjct: 18468695 ggtggatgtccagtgataaaaggtaacaaatggtcatcgacaaagtggatgcgtgttcat 18468754 Query: 400 gagtacaa 407 |||||||| Sbjct: 18468755 gagtacaa 18468762
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 161 bits (81), Expect = 3e-36 Identities = 114/125 (91%) Strand = Plus / Plus Query: 25 aacggagagggccttcaggttctccactatgaagttggacagaaatatgaacctcacttt 84 ||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||| Sbjct: 18478247 aacggagagggtcttcaagtcctccactatgaagttggacagaagtatgaacctcacttc 18478306 Query: 85 gattacttccatgatgatttcaacaccaaaaatgggggccagcgcatagccactgttctt 144 ||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||| ||||| Sbjct: 18478307 gattacttccatgatgaattcaacaccaaaaacggggggcagcgtatagcaactcttctt 18478366 Query: 145 atgta 149 ||||| Sbjct: 18478367 atgta 18478371 Score = 157 bits (79), Expect = 4e-35 Identities = 160/187 (85%) Strand = Plus / Plus Query: 157 gatgttgaagagggcggtgagaccgtgtttccttctgctaaagttaatagcagctcaata 216 |||||||||||||| |||||||| | || || ||| |||||| ||| ||||||||| | Sbjct: 18478467 gatgttgaagagggtggtgagactattttcccctcttctaaagctaacagcagctcatca 18478526 Query: 217 ccattttataatgagctgtctgaatgtgcaaaacggggtatatctgtcaaaccgaagatg 276 ||||||||||||||||||||||||||||| || |||| | |||||||||| |||||| Sbjct: 18478527 ccattttataatgagctgtctgaatgtgctaagaagggtttggctgtcaaacccaagatg 18478586 Query: 277 ggagatgcattacttttctggagcatgaggcctgatggaaccctggatcccacaagcctc 336 |||||||| || |||||||||||||||||||||||||| | ||||| |||||||||| Sbjct: 18478587 ggagatgctttgcttttctggagcatgaggcctgatgggtctttggatgccacaagcctt 18478646 Query: 337 catggtg 343 ||||||| Sbjct: 18478647 catggtg 18478653 Score = 111 bits (56), Expect = 2e-21 Identities = 65/68 (95%) Strand = Plus / Plus Query: 340 ggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggattcgtgttcat 399 |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| Sbjct: 18478748 ggtggatgtccagtgataaaaggtaacaaatggtcatcgacaaagtggatgcgtgttcat 18478807 Query: 400 gagtacaa 407 |||||||| Sbjct: 18478808 gagtacaa 18478815
>gb|AY085158.1| Arabidopsis thaliana clone 13404 mRNA, complete sequence Length = 1337 Score = 103 bits (52), Expect = 5e-19 Identities = 283/360 (78%) Strand = Plus / Plus Query: 37 cttcaggttctccactatgaagttggacagaaatatgaacctcactttgattacttccat 96 ||||| ||||| ||||| |||| || || || |||||||| |||| |||||| || | Sbjct: 632 cttcaagttcttcactacgaagcagggcaaaagtatgaaccacactatgattattttgtt 691 Query: 97 gatgatttcaacaccaaaaatgggggccagcgcatagccactgttcttatgtacctttcg 156 ||||| |||||||| |||||||| || || || || || || | |||||||| || ||| Sbjct: 692 gatgagttcaacactaaaaatggaggtcaacggatggctacaatgcttatgtatctgtcg 751 Query: 157 gatgttgaagagggcggtgagaccgtgtttccttctgctaaagttaatagcagctcaata 216 |||||||| || |||||||| || ||||||||| |||| || | ||| || || || Sbjct: 752 gatgttgaggaaggcggtgaaacagtgtttcctgctgccaatatgaattttagttctgta 811 Query: 217 ccattttataatgagctgtctgaatgtgcaaaacggggtatatctgtcaaaccgaagatg 276 |||| ||||||||||| ||||| |||| ||| ||| | || || || |||| ||| Sbjct: 812 ccatggtataatgagctctctgagtgtgggaaaaagggactttccgtaaagccgagaatg 871 Query: 277 ggagatgcattacttttctggagcatgaggcctgatggaaccctggatcccacaagcctc 336 || |||||||| ||||||||||||||||||||||||| || || ||||| ||||| | Sbjct: 872 ggtgatgcattgcttttctggagcatgaggcctgatgctacactagatcctacaagtttg 931 Query: 337 catggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggattcgtgtt 396 |||||||||||||| ||||| | ||| |||| ||||||||||| || ||||||| |||| Sbjct: 932 catggtggatgtcctgtgattagagggaacaagtggtcatctaccaaatggattcatgtt 991
>ref|NM_101878.2| Arabidopsis thaliana oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and > AT1G20270 mRNA, complete cds Length = 1336 Score = 97.6 bits (49), Expect = 3e-17 Identities = 277/353 (78%) Strand = Plus / Plus Query: 37 cttcaggttctccactatgaagttggacagaaatatgaacctcactttgattacttccat 96 ||||| ||||| ||||| |||| || || || |||||||| |||| |||||| || | Sbjct: 631 cttcaagttcttcactacgaagcagggcaaaagtatgaaccacactatgattattttgtt 690 Query: 97 gatgatttcaacaccaaaaatgggggccagcgcatagccactgttcttatgtacctttcg 156 ||||| |||||||| |||||||| || || || || || || | |||||||| || ||| Sbjct: 691 gatgagttcaacactaaaaatggaggtcaacggatggctacaatgcttatgtatctgtcg 750 Query: 157 gatgttgaagagggcggtgagaccgtgtttccttctgctaaagttaatagcagctcaata 216 |||||||| || |||||||| || ||||||||| |||| || | ||| || || || Sbjct: 751 gatgttgaggaaggcggtgaaacagtgtttcctgctgccaatatgaattttagttctgta 810 Query: 217 ccattttataatgagctgtctgaatgtgcaaaacggggtatatctgtcaaaccgaagatg 276 |||| ||||||||||| ||||| |||| ||| ||| | || || || |||| ||| Sbjct: 811 ccatggtataatgagctctctgagtgtgggaaaaagggactttccgtaaagccgagaatg 870 Query: 277 ggagatgcattacttttctggagcatgaggcctgatggaaccctggatcccacaagcctc 336 || |||||||| ||||||||||||||||||||||||| || || ||||| ||||| | Sbjct: 871 ggtgatgcattgcttttctggagcatgaggcctgatgctacactagatcctacaagtttg 930 Query: 337 catggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggat 389 |||||||||||||| ||||| | ||| |||| ||||||||||| || ||||| Sbjct: 931 catggtggatgtcctgtgattagagggaacaagtggtcatctaccaaatggat 983
>gb|BT025038.1| Arabidopsis thaliana At1g20270 mRNA, complete cds Length = 864 Score = 97.6 bits (49), Expect = 3e-17 Identities = 277/353 (78%) Strand = Plus / Plus Query: 37 cttcaggttctccactatgaagttggacagaaatatgaacctcactttgattacttccat 96 ||||| ||||| ||||| |||| || || || |||||||| |||| |||||| || | Sbjct: 487 cttcaagttcttcactacgaagcagggcaaaagtatgaaccacactatgattattttgtt 546 Query: 97 gatgatttcaacaccaaaaatgggggccagcgcatagccactgttcttatgtacctttcg 156 ||||| |||||||| |||||||| || || || || || || | |||||||| || ||| Sbjct: 547 gatgagttcaacactaaaaatggaggtcaacggatggctacaatgcttatgtatctgtcg 606 Query: 157 gatgttgaagagggcggtgagaccgtgtttccttctgctaaagttaatagcagctcaata 216 |||||||| || |||||||| || ||||||||| |||| || | ||| || || || Sbjct: 607 gatgttgaggaaggcggtgaaacagtgtttcctgctgccaatatgaattttagttctgta 666 Query: 217 ccattttataatgagctgtctgaatgtgcaaaacggggtatatctgtcaaaccgaagatg 276 |||| ||||||||||| ||||| |||| ||| ||| | || || || |||| ||| Sbjct: 667 ccatggtataatgagctctctgagtgtgggaaaaagggactttccgtaaagccgagaatg 726 Query: 277 ggagatgcattacttttctggagcatgaggcctgatggaaccctggatcccacaagcctc 336 || |||||||| ||||||||||||||||||||||||| || || ||||| ||||| | Sbjct: 727 ggtgatgcattgcttttctggagcatgaggcctgatgctacactagatcctacaagtttg 786 Query: 337 catggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggat 389 |||||||||||||| ||||| | ||| |||| ||||||||||| || ||||| Sbjct: 787 catggtggatgtcctgtgattagagggaacaagtggtcatctaccaaatggat 839
>gb|AC137702.18| Medicago truncatula clone mth2-7k10, complete sequence Length = 94750 Score = 83.8 bits (42), Expect = 5e-13 Identities = 102/122 (83%) Strand = Plus / Plus Query: 28 ggagagggccttcaggttctccactatgaagttggacagaaatatgaacctcactttgat 87 |||||||| ||||||||||| ||||||| |||||| | |||||||| ||||| | |||| Sbjct: 24503 ggagagggacttcaggttcttcactatggagttggggaaaaatatgagcctcattatgat 24562 Query: 88 tacttccatgatgatttcaacaccaaaaatgggggccagcgcatagccactgttcttatg 147 ||||||| |||||| |||||||| || ||||| ||||| || | || || ||||||||| Sbjct: 24563 tacttccttgatgagttcaacactaagaatggaggccaacgagttgcaacagttcttatg 24622 Query: 148 ta 149 || Sbjct: 24623 ta 24624 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Plus Query: 160 gttgaagagggcggtgagaccgtgtttccttctgctaa 197 |||||||| || ||||||||||| |||||| ||||||| Sbjct: 24734 gttgaagaaggaggtgagaccgtatttcctgctgctaa 24771 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 28 ggagagggccttcaggttctccactatgaagttggacagaaatatgaacctca 80 |||||||| |||||| || | ||||||||||| || ||||||| ||| ||||| Sbjct: 48132 ggagagggacttcagattattcactatgaagtcgggcagaaatttgagcctca 48184
>emb|CR932965.2| Medicago truncatula chromosome 5 clone mth2-47e6, COMPLETE SEQUENCE Length = 96647 Score = 79.8 bits (40), Expect = 8e-12 Identities = 97/116 (83%) Strand = Plus / Plus Query: 37 cttcaggttctccactatgaagttggacagaaatatgaacctcactttgattacttccat 96 ||||| ||||| || |||||||||||||| || ||||| ||||||| ||| ||||| | | Sbjct: 46792 cttcaagttctacattatgaagttggacaaaagtatgagcctcactatgactactttctt 46851 Query: 97 gatgatttcaacaccaaaaatgggggccagcgcatagccactgttcttatgtacct 152 ||||| || ||||| || |||||||| ||||||||||| || || || |||||||| Sbjct: 46852 gatgaatttaacacaaagaatgggggtcagcgcatagcaacggtactgatgtacct 46907 Score = 44.1 bits (22), Expect = 0.42 Identities = 31/34 (91%) Strand = Plus / Plus Query: 280 gatgcattacttttctggagcatgaggcctgatg 313 ||||| ||||||||||||||||||| ||| |||| Sbjct: 47131 gatgctttacttttctggagcatgaagccggatg 47164 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 157 gatgttgaagagggcggtgagaccgtgtttccttctgctaa 197 ||||||||||| || |||||||| ||||| ||| ||||||| Sbjct: 47008 gatgttgaagaagggggtgagacagtgttccctgctgctaa 47048
>ref|NM_126004.1| Arabidopsis thaliana oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and > AT5G66060 mRNA, complete cds Length = 804 Score = 77.8 bits (39), Expect = 3e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 259 tctgtcaaaccgaagatgggagatgcattacttttctggagcatgaggcctgatg 313 ||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||| Sbjct: 715 tctgtgaaaccaaagatgggagatgcattgcttttctggagcatgacgcctgatg 769
>dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2A18 Length = 79899 Score = 77.8 bits (39), Expect = 3e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 259 tctgtcaaaccgaagatgggagatgcattacttttctggagcatgaggcctgatg 313 ||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||| Sbjct: 37321 tctgtgaaaccaaagatgggagatgcattgcttttctggagcatgacgcctgatg 37375
>ref|NM_127326.3| Arabidopsis thaliana oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and > AT2G17720 mRNA, complete cds Length = 1325 Score = 73.8 bits (37), Expect = 5e-10 Identities = 131/161 (81%), Gaps = 1/161 (0%) Strand = Plus / Plus Query: 1 atttcaccttcatacctgtagnaaaacggagagggccttcaggttctccactatgaagtt 60 ||||||||||||| ||||| | |||| || || || ||||| ||||| ||||| ||||| Sbjct: 641 atttcaccttcattcctgttg-aaaatggtgaaggtcttcaagttcttcactaccaagtt 699 Query: 61 ggacagaaatatgaacctcactttgattacttccatgatgatttcaacaccaaaaatggg 120 || ||||| ||||| ||||||| ||| || ||| ||||| ||||||||||| ||||| Sbjct: 700 gggcagaagtatgagcctcactatgactatttcttagatgagttcaacaccaagaatgga 759 Query: 121 ggccagcgcatagccactgttcttatgtacctttcggatgt 161 || || || ||||| ||||| ||||||||||| || ||||| Sbjct: 760 ggacaacgaatagctactgtgcttatgtacctctctgatgt 800 Score = 63.9 bits (32), Expect = 5e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 278 gagatgcattacttttctggagcatgaggcctgatggaaccctggatcccacaagcctcc 337 ||||||| ||||||||||||| |||||||||||||| | | || || || | ||| | | Sbjct: 917 gagatgctttacttttctggaacatgaggcctgatgcatctctagacccttcgagcttgc 976 Query: 338 atggtggatgtccagtgataaaaggtgacaaatggtcatc 377 | ||||||||||||||| | ||||| ||||||||||||| Sbjct: 977 acggtggatgtccagtggtgaaaggaaacaaatggtcatc 1016
>ref|XM_468502.1| Oryza sativa (japonica cultivar-group), mRNA Length = 933 Score = 73.8 bits (37), Expect = 5e-10 Identities = 217/277 (78%) Strand = Plus / Plus Query: 28 ggagagggccttcaggttctccactatgaagttggacagaaatatgaacctcactttgat 87 |||||||| || || ||||| ||||||||||| || ||||| || || ||||||||||| Sbjct: 547 ggagagggactccaagttctgcactatgaagtcgggcagaagtacgagcctcactttgac 606 Query: 88 tacttccatgatgatttcaacaccaaaaatgggggccagcgcatagccactgttcttatg 147 || || | |||||| | ||||||||| ||||| || ||| | || || ||| |||| ||| Sbjct: 607 tattttcttgatgagtacaacaccaagaatggtggtcagagaatggctactcttctgatg 666 Query: 148 tacctttcggatgttgaagagggcggtgagaccgtgtttccttctgctaaagttaatagc 207 || || || ||||||||||| || |||||||| | || ||| ||| || || || ||| Sbjct: 667 tatctatctgatgttgaagaagggggtgagactattttccctgatgcaaatgtgaacagc 726 Query: 208 agctcaataccattttataatgagctgtctgaatgtgcaaaacggggtatatctgtcaaa 267 || ||| |||||| |||||||| || || || ||||| | | ||| | |||||||| Sbjct: 727 agttcattaccatggtataatgaactttcagagtgtgccagaaagggccttgctgtcaaa 786 Query: 268 ccgaagatgggagatgcattacttttctggagcatga 304 || |||||||||||||| | ||||| |||||||||| Sbjct: 787 ccaaagatgggagatgcgcttcttttttggagcatga 823
>gb|BT024854.1| Arabidopsis thaliana At2g17720 gene, complete cds Length = 876 Score = 73.8 bits (37), Expect = 5e-10 Identities = 131/161 (81%), Gaps = 1/161 (0%) Strand = Plus / Plus Query: 1 atttcaccttcatacctgtagnaaaacggagagggccttcaggttctccactatgaagtt 60 ||||||||||||| ||||| | |||| || || || ||||| ||||| ||||| ||||| Sbjct: 464 atttcaccttcattcctgttg-aaaatggtgaaggtcttcaagttcttcactaccaagtt 522 Query: 61 ggacagaaatatgaacctcactttgattacttccatgatgatttcaacaccaaaaatggg 120 || ||||| ||||| ||||||| ||| || ||| ||||| ||||||||||| ||||| Sbjct: 523 gggcagaagtatgagcctcactatgactatttcttagatgagttcaacaccaagaatgga 582 Query: 121 ggccagcgcatagccactgttcttatgtacctttcggatgt 161 || || || ||||| ||||| ||||||||||| || ||||| Sbjct: 583 ggacaacgaatagctactgtgcttatgtacctctctgatgt 623 Score = 63.9 bits (32), Expect = 5e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 278 gagatgcattacttttctggagcatgaggcctgatggaaccctggatcccacaagcctcc 337 ||||||| ||||||||||||| |||||||||||||| | | || || || | ||| | | Sbjct: 740 gagatgctttacttttctggaacatgaggcctgatgcatctctagacccttcgagcttgc 799 Query: 338 atggtggatgtccagtgataaaaggtgacaaatggtcatc 377 | ||||||||||||||| | ||||| ||||||||||||| Sbjct: 800 acggtggatgtccagtggtgaaaggaaacaaatggtcatc 839
>gb|AY087497.1| Arabidopsis thaliana clone 36054 mRNA, complete sequence Length = 1220 Score = 73.8 bits (37), Expect = 5e-10 Identities = 131/161 (81%), Gaps = 1/161 (0%) Strand = Plus / Plus Query: 1 atttcaccttcatacctgtagnaaaacggagagggccttcaggttctccactatgaagtt 60 ||||||||||||| ||||| | |||| || || || ||||| ||||| ||||| ||||| Sbjct: 541 atttcaccttcattcctgttg-aaaatggtgaaggtcttcaagttcttcactaccaagtt 599 Query: 61 ggacagaaatatgaacctcactttgattacttccatgatgatttcaacaccaaaaatggg 120 || ||||| ||||| ||||||| ||| || ||| ||||| ||||||||||| ||||| Sbjct: 600 gggcagaagtatgagcctcactatgactatttcttagatgagttcaacaccaagaatgga 659 Query: 121 ggccagcgcatagccactgttcttatgtacctttcggatgt 161 || || || ||||| ||||| ||||||||||| || ||||| Sbjct: 660 ggacaacgaatagctactgtgcttatgtacctctctgatgt 700 Score = 63.9 bits (32), Expect = 5e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 278 gagatgcattacttttctggagcatgaggcctgatggaaccctggatcccacaagcctcc 337 ||||||| ||||||||||||| |||||||||||||| | | || || || | ||| | | Sbjct: 817 gagatgctttacttttctggaacatgaggcctgatgcatctctagacccttcgagcttgc 876 Query: 338 atggtggatgtccagtgataaaaggtgacaaatggtcatc 377 | ||||||||||||||| | ||||| ||||||||||||| Sbjct: 877 acggtggatgtccagtggtgaaaggaaacaaatggtcatc 916
>gb|AY107112.1| Zea mays PCO093706 mRNA sequence Length = 1209 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 259 tctgtcaaaccgaagatgggagatgcattacttttctggagcatga 304 ||||||||||| ||||||||||||||| | |||||||||||||||| Sbjct: 574 tctgtcaaaccaaagatgggagatgcacttcttttctggagcatga 619 Score = 67.9 bits (34), Expect = 3e-08 Identities = 131/162 (80%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 6 accttcatacctgtagnaaaacggagagggccttcaggttctccactatgaagttggaca 65 |||||||||||||||| | | |||||||| || || || || || |||||||| || || Sbjct: 322 accttcatacctgtag-atcatggagagggactccaagtactgcattatgaagtcgggca 380 Query: 66 gaaatatgaacctcactttgattacttccatgatgatttcaacaccaaaaatgggggcca 125 ||| ||||| |||||||||||||| || | |||||| || |||||||| ||||| || || Sbjct: 381 gaagtatgagcctcactttgattattttcttgatgagtttaacaccaagaatggtggtca 440 Query: 126 gcgcatagccactgttcttatgtacctttcggatgttgaaga 167 | | || || ||| |||| ||||| || || ||||||||||| Sbjct: 441 gaggatggctactcttctgatgtatctatcagatgttgaaga 482
>gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1119_H02, complete sequence Length = 138584 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggatt 390 |||||||| | |||||| ||||| ||||| ||||| |||||||| |||||||||||||| Sbjct: 101811 agcctccacgctggatgcccagtcataaagggtgagaaatggtctgctacaaagtggatt 101870 Query: 391 cgtgt 395 ||||| Sbjct: 101871 cgtgt 101875 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 cgcatagccactgttcttatgtac 150 |||||||| ||||||||||||||| Sbjct: 101324 cgcatagctactgttcttatgtac 101347
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggatt 390 |||||||| | |||||| ||||| ||||| ||||| |||||||| |||||||||||||| Sbjct: 23897976 agcctccacgctggatgcccagtcataaagggtgagaaatggtctgctacaaagtggatt 23898035 Query: 391 cgtgt 395 ||||| Sbjct: 23898036 cgtgt 23898040 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 cgcatagccactgttcttatgtac 150 |||||||| ||||||||||||||| Sbjct: 23897489 cgcatagctactgttcttatgtac 23897512
>emb|BX820026.1|CNS0A8G2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS64ZA08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1288 Score = 65.9 bits (33), Expect = 1e-07 Identities = 130/161 (80%), Gaps = 1/161 (0%) Strand = Plus / Plus Query: 1 atttcaccttcatacctgtagnaaaacggagagggccttcaggttctccactatgaagtt 60 ||||||||||||| ||||| | |||| || || || ||||| ||||| ||||| ||||| Sbjct: 641 atttcaccttcattcctgttg-aaaatggtgaaggtcttcaagttcttcactaccaagtt 699 Query: 61 ggacagaaatatgaacctcactttgattacttccatgatgatttcaacaccaaaaatggg 120 || ||||| ||||| ||||||| ||| || || ||||| ||||||||||| ||||| Sbjct: 700 gggcagaagtatgagcctcactatgactatctcttagatgagttcaacaccaagaatgga 759 Query: 121 ggccagcgcatagccactgttcttatgtacctttcggatgt 161 || || || ||||| ||||| ||||||||||| || ||||| Sbjct: 760 ggacaacgaatagctactgtgcttatgtacctctctgatgt 800 Score = 63.9 bits (32), Expect = 5e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 278 gagatgcattacttttctggagcatgaggcctgatggaaccctggatcccacaagcctcc 337 ||||||| ||||||||||||| |||||||||||||| | | || || || | ||| | | Sbjct: 917 gagatgctttacttttctggaacatgaggcctgatgcatctctcgacccttcgagcttgc 976 Query: 338 atggtggatgtccagtgataaaaggtgacaaatggtcatc 377 | ||||||||||||||| | ||||| ||||||||||||| Sbjct: 977 acggtggatgtccagtggtgaaaggaaacaaatggtcatc 1016
>dbj|AK103739.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138K17, full insert sequence Length = 1650 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggatt 390 |||||||| | |||||| ||||| ||||| ||||| |||||||| |||||||||||||| Sbjct: 913 agcctccacgctggatgcccagtcataaagggtgagaaatggtctgctacaaagtggatt 972 Query: 391 cgtgt 395 ||||| Sbjct: 973 cgtgt 977 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 cgcatagccactgttcttatgtac 150 |||||||| ||||||||||||||| Sbjct: 703 cgcatagctactgttcttatgtac 726
>gb|AY587604.1| Dianthus caryophyllus prolyl 4-hydroxylase (P4H1) mRNA, complete cds Length = 1201 Score = 63.9 bits (32), Expect = 5e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 64 cagaaatatgaacctcactttgattacttcca 95 |||||||||||||||||||||||||||||||| Sbjct: 508 cagaaatatgaacctcactttgattacttcca 539
>gb|AC026234.4|F14O10 Sequence of BAC F14O10 from Arabidopsis thaliana chromosome 1, complete sequence Length = 53889 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 274 atgggagatgcattacttttctggagcatgaggcctgatg 313 ||||| |||||||| ||||||||||||||||||||||||| Sbjct: 44002 atgggtgatgcattgcttttctggagcatgaggcctgatg 44041
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 28 ggagagggccttcaggttctccactatgaagttggacagaaatatgaacctcactttgat 87 |||||||| || || ||||| ||||||||||| || ||||| || || ||||||||||| Sbjct: 35565291 ggagagggactccaagttctgcactatgaagtcgggcagaagtacgagcctcactttgac 35565350 Query: 88 tacttccatgatgatttcaacaccaaaaatgg 119 || || | |||||| | ||||||||| ||||| Sbjct: 35565351 tattttcttgatgagtacaacaccaagaatgg 35565382 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 260 ctgtcaaaccgaagatgggagatgcattacttttctggagcatga 304 |||||||||| |||||||||||||| | ||||| |||||||||| Sbjct: 35565615 ctgtcaaaccaaagatgggagatgcgcttcttttttggagcatga 35565659 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 365 acaaatggtcatctacaaagtggattcgtgttcatgagtacaaag 409 ||||||||||||| || |||||||| | ||| | ||||||||||| Sbjct: 35565912 acaaatggtcatcaaccaagtggatgcatgtccgtgagtacaaag 35565956
>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0452F04 Length = 171421 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 28 ggagagggccttcaggttctccactatgaagttggacagaaatatgaacctcactttgat 87 |||||||| || || ||||| ||||||||||| || ||||| || || ||||||||||| Sbjct: 81683 ggagagggactccaagttctgcactatgaagtcgggcagaagtacgagcctcactttgac 81742 Query: 88 tacttccatgatgatttcaacaccaaaaatgg 119 || || | |||||| | ||||||||| ||||| Sbjct: 81743 tattttcttgatgagtacaacaccaagaatgg 81774 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 260 ctgtcaaaccgaagatgggagatgcattacttttctggagcatga 304 |||||||||| |||||||||||||| | ||||| |||||||||| Sbjct: 82007 ctgtcaaaccaaagatgggagatgcgcttcttttttggagcatga 82051 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 365 acaaatggtcatctacaaagtggattcgtgttcatgagtacaaag 409 ||||||||||||| || |||||||| | ||| | ||||||||||| Sbjct: 82304 acaaatggtcatcaaccaagtggatgcatgtccgtgagtacaaag 82348
>ref|NM_119747.2| Arabidopsis thaliana oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and > AT4G35810 mRNA, complete cds Length = 873 Score = 50.1 bits (25), Expect = 0.007 Identities = 68/81 (83%), Gaps = 1/81 (1%) Strand = Plus / Plus Query: 1 atttcaccttcatacctgtagnaaaacggagagggccttcaggttctccactatgaagtt 60 ||||||||||||| ||| || |||| |||||||| || || ||||| || ||||||||| Sbjct: 464 atttcaccttcattcctccag-aaaatggagaggggctgcaagttcttcattatgaagtt 522 Query: 61 ggacagaaatatgaacctcac 81 || |||| |||||| |||||| Sbjct: 523 gggcagagatatgagcctcac 543 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 337 catggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggattcgtgtt 396 |||||||| ||||||||||| ||||| |||| |||||||| || || ||| ||| ||| Sbjct: 799 catggtggttgtccagtgatcaaaggaaacaagtggtcatcaactaaatggtttcacgtt 858 Query: 397 catgagtacaa 407 || |||||||| Sbjct: 859 cacgagtacaa 869
>gb|AY108734.1| Zea mays PCO107217 mRNA sequence Length = 1418 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggatt 390 |||||||||||||| || || || |||||||| || |||||||| |||| |||||||| Sbjct: 886 agcctccatggtggttgcccggtcataaaaggcgagaaatggtcggctacgaagtggatc 945 Query: 391 cgtgt 395 ||||| Sbjct: 946 cgtgt 950
>ref|NM_119748.1| Arabidopsis thaliana oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and > AT4G35820 mRNA, complete cds Length = 819 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 52 tatgaagttggacagaaatatgaacctcactttga 86 ||||||||||| ||||||| ||| ||||||||||| Sbjct: 562 tatgaagttgggcagaaatttgagcctcactttga 596
>gb|AC147499.5| Medicago truncatula clone mth2-22h5, complete sequence Length = 128625 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 346 tgtccagtgataaaaggtgacaaatggtcatctacaaagtggattcgtgtt 396 ||||||||||| ||||||| || |||||| | ||||||||||||| |||| Sbjct: 62625 tgtccagtgattgaaggtgagaagtggtcagcaacaaagtggattcatgtt 62575
>gb|DQ446899.1| Arabidopsis thaliana clone pENTR221-At4g35820 oxidoreductase 2OG-Fe(II) oxygenase family protein (At4g35820) mRNA, complete cds Length = 1209 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 52 tatgaagttggacagaaatatgaacctcactttga 86 ||||||||||| ||||||| ||| ||||||||||| Sbjct: 851 tatgaagttgggcagaaatttgagcctcactttga 885
>emb|AL161588.2|ATCHRIV84 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 84 Length = 195452 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 52 tatgaagttggacagaaatatgaacctcactttga 86 ||||||||||| ||||||| ||| ||||||||||| Sbjct: 43830 tatgaagttgggcagaaatttgagcctcactttga 43864 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Plus Query: 23 aaaacggagagggccttcaggttctccactatgaagttggacagaaatatgaacctcac 81 |||| |||||||| || || ||||| || ||||||||||| |||| |||||| |||||| Sbjct: 41553 aaaatggagaggggctgcaagttcttcattatgaagttgggcagagatatgagcctcac 41611 Score = 40.1 bits (20), Expect = 6.6 Identities = 56/68 (82%) Strand = Plus / Plus Query: 340 ggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggattcgtgttcat 399 ||||| ||||||||||| ||||| |||| |||||||| || || ||| ||| ||||| Sbjct: 42046 ggtggttgtccagtgatcaaaggaaacaagtggtcatcaactaaatggtttcacgttcac 42105 Query: 400 gagtacaa 407 |||||||| Sbjct: 42106 gagtacaa 42113
>emb|AL031986.1|ATF4B14 Arabidopsis thaliana DNA chromosome 4, BAC clone F4B14 (ESSA project) Length = 99461 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 52 tatgaagttggacagaaatatgaacctcactttga 86 ||||||||||| ||||||| ||| ||||||||||| Sbjct: 35634 tatgaagttgggcagaaatttgagcctcactttga 35668 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Plus Query: 23 aaaacggagagggccttcaggttctccactatgaagttggacagaaatatgaacctcac 81 |||| |||||||| || || ||||| || ||||||||||| |||| |||||| |||||| Sbjct: 33357 aaaatggagaggggctgcaagttcttcattatgaagttgggcagagatatgagcctcac 33415 Score = 40.1 bits (20), Expect = 6.6 Identities = 56/68 (82%) Strand = Plus / Plus Query: 340 ggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggattcgtgttcat 399 ||||| ||||||||||| ||||| |||| |||||||| || || ||| ||| ||||| Sbjct: 33850 ggtggttgtccagtgatcaaaggaaacaagtggtcatcaactaaatggtttcacgttcac 33909 Query: 400 gagtacaa 407 |||||||| Sbjct: 33910 gagtacaa 33917
>dbj|AP006382.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT32J05, TM0238, complete sequence Length = 131947 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 337 catggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggattc 391 |||| |||||| ||||| || ||||||| ||||||||| | ||||||||||||| Sbjct: 29371 catgctggatgcccagtaatcgaaggtgagaaatggtcagcgacaaagtggattc 29425
>gb|BT013787.1| Lycopersicon esculentum clone 132681F, mRNA sequence Length = 1066 Score = 42.1 bits (21), Expect = 1.7 Identities = 51/61 (83%) Strand = Plus / Plus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtcatctacaaagtggatt 390 |||||||||||||| || || || | ||||||| ||||||||| | |||||||||||| Sbjct: 748 agcctccatggtgggtgccctgtacttcaaggtgagaaatggtcagcaacaaagtggatt 807 Query: 391 c 391 | Sbjct: 808 c 808
>emb|BX927336.18| Zebrafish DNA sequence from clone CH211-215P11 in linkage group 5, complete sequence Length = 200686 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 85588 attacttccatgatgatttca 85608
>emb|BX901972.12| Zebrafish DNA sequence from clone DKEY-24H22 in linkage group 1, complete sequence Length = 212798 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 173041 attacttccatgatgatttca 173021
>emb|BX005361.16| Zebrafish DNA sequence from clone DKEY-19C8 in linkage group 8, complete sequence Length = 222110 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 32833 attacttccatgatgatttca 32853
>emb|BX247865.15| Zebrafish DNA sequence from clone CH211-205J13 in linkage group 8, complete sequence Length = 169286 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 159762 attacttccatgatgatttca 159742 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 92494 attacttccatgatgatttca 92474 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 40512 attacttccatgatgatttca 40492
>emb|BX649556.9| Zebrafish DNA sequence from clone DKEY-29M1 in linkage group 11, complete sequence Length = 197002 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 49649 attacttccatgatgatttca 49629
>emb|BX000477.13| Zebrafish DNA sequence from clone CH211-59D8 in linkage group 10, complete sequence Length = 176689 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 128857 attacttccatgatgatttca 128837
>gb|AC158522.2| Mus musculus BAC clone RP23-400N21 from chromosome 14, complete sequence Length = 209322 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 ttacttccatgatgatttcaa 107 ||||||||||||||||||||| Sbjct: 126647 ttacttccatgatgatttcaa 126627
>emb|BX248105.5| Zebrafish DNA sequence from clone CH211-270A9, complete sequence Length = 158673 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 83367 attacttccatgatgatttca 83387
>emb|BX005374.5| Zebrafish DNA sequence from clone DKEY-29H23 in linkage group 15, complete sequence Length = 204318 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 63302 attacttccatgatgatttca 63282
>emb|CR762435.19| Zebrafish DNA sequence from clone CH211-238C15 in linkage group 18, complete sequence Length = 157544 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 ctcactttgattacttccatg 97 ||||||||||||||||||||| Sbjct: 37673 ctcactttgattacttccatg 37653
>emb|CR376730.13| Zebrafish DNA sequence from clone CH211-205A14 in linkage group 20, complete sequence Length = 156481 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 71323 attacttccatgatgatttca 71303
>emb|BX548157.5| Zebrafish DNA sequence from clone CH211-201B11 in linkage group 18, complete sequence Length = 195621 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 121272 attacttccatgatgatttca 121292
>emb|BX005366.18| Zebrafish DNA sequence from clone DKEY-222J15 in linkage group 1, complete sequence Length = 162076 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 86786 attacttccatgatgatttca 86766
>dbj|AK058935.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-E12, full insert sequence Length = 523 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 365 acaaatggtcatctacaaagtggattcgtgttcatgagtacaaag 409 ||||||||||||| || |||||||| | ||| | ||||||||||| Sbjct: 75 acaaatggtcatcaaccaagtggatgcatgtccgtgagtacaaag 119
>emb|BX005399.30| Zebrafish DNA sequence from clone DKEY-3D16 in linkage group 8, complete sequence Length = 193926 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 133419 attacttccatgatgatttca 133439
>emb|CR931725.6| Zebrafish DNA sequence from clone DKEY-22M10 in linkage group 11, complete sequence Length = 205299 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 63771 attacttccatgatgatttca 63751
>emb|CR786581.30| Zebrafish DNA sequence from clone DKEY-179C19 in linkage group 8, complete sequence Length = 166217 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 92144 attacttccatgatgatttca 92164
>emb|BX005242.6| Zebrafish DNA sequence from clone DKEY-67N17 in linkage group 16, complete sequence Length = 192177 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 181602 attacttccatgatgatttca 181622
>emb|CR392005.15| Zebrafish DNA sequence from clone DKEY-254K18 in linkage group 5, complete sequence Length = 55105 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 attacttccatgatgatttca 106 ||||||||||||||||||||| Sbjct: 12199 attacttccatgatgatttca 12179
>ref|NM_121895.2| Arabidopsis thaliana oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and > AT5G18900 mRNA, complete cds Length = 1210 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtc 374 ||||| || ||||||||||| |||||| |||| || |||||||| Sbjct: 789 agccttcacggtggatgtcctgtgatagaaggagagaaatggtc 832
>ref|NM_111505.2| Arabidopsis thaliana AT-P4H-2; oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one d> AT3G06300 (AT-P4H-2) mRNA, complete cds Length = 1062 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 64 cagaaatatgaacctcactttgattacttcca 95 ||||||||||| |||||||||| |||||||| Sbjct: 433 cagaaatatgatgctcactttgactacttcca 464
>ref|XM_476973.1| Oryza sativa (japonica cultivar-group), mRNA Length = 942 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtc 374 ||||||||||| | || ||||||||| ||||||| |||||||| Sbjct: 703 agcctccatgggagctgcccagtgatagaaggtgaaaaatggtc 746
>ref|NM_025534.2| Mus musculus coiled-coil domain containing 82 (Ccdc82), mRNA Length = 4665 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tgtttccttctgctaaagtt 201 |||||||||||||||||||| Sbjct: 4461 tgtttccttctgctaaagtt 4480
>gb|AC011623.5|ATAC011623 Arabidopsis thaliana chromosome III BAC F24P17 genomic sequence, complete sequence Length = 86022 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 64 cagaaatatgaacctcactttgattacttcca 95 ||||||||||| |||||||||| |||||||| Sbjct: 83343 cagaaatatgatgctcactttgactacttcca 83312
>gb|AC018907.5|ATAC018907 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence Length = 93478 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 64 cagaaatatgaacctcactttgattacttcca 95 ||||||||||| |||||||||| |||||||| Sbjct: 75146 cagaaatatgatgctcactttgactacttcca 75177
>gb|AC124689.5| Mus musculus BAC clone RP24-147N6 from chromosome 6, complete sequence Length = 187752 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 tacttttctggagcatgagg 306 |||||||||||||||||||| Sbjct: 59888 tacttttctggagcatgagg 59869
>gb|BC098496.1| Mus musculus coiled-coil domain containing 82, mRNA (cDNA clone MGC:107477 IMAGE:30089818), complete cds Length = 4746 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tgtttccttctgctaaagtt 201 |||||||||||||||||||| Sbjct: 4388 tgtttccttctgctaaagtt 4407
>gb|BC057326.1| Mus musculus coiled-coil domain containing 82, mRNA (cDNA clone MGC:66886 IMAGE:6826080), complete cds Length = 4665 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tgtttccttctgctaaagtt 201 |||||||||||||||||||| Sbjct: 4461 tgtttccttctgctaaagtt 4480
>gb|BC040405.1| Mus musculus coiled-coil domain containing 82, mRNA (cDNA clone IMAGE:4014849), with apparent retained intron Length = 3856 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tgtttccttctgctaaagtt 201 |||||||||||||||||||| Sbjct: 3623 tgtttccttctgctaaagtt 3642
>gb|BC020485.1| Mus musculus, clone IMAGE:3707784, mRNA Length = 1836 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tgtttccttctgctaaagtt 201 |||||||||||||||||||| Sbjct: 1646 tgtttccttctgctaaagtt 1665
>gb|AY128940.1| Arabidopsis thaliana unknown protein (At5g18900) mRNA, complete cds Length = 998 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtc 374 ||||| || ||||||||||| |||||| |||| || |||||||| Sbjct: 670 agccttcacggtggatgtcctgtgatagaaggagagaaatggtc 713
>gb|AY093039.1| Arabidopsis thaliana unknown protein (At5g18900) mRNA, complete cds Length = 1116 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtc 374 ||||| || ||||||||||| |||||| |||| || |||||||| Sbjct: 719 agccttcacggtggatgtcctgtgatagaaggagagaaatggtc 762
>gb|AC008949.9| Homo sapiens chromosome 5 clone CTD-2335O24, complete sequence Length = 163731 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 caccagttactaaatatgtg 465 |||||||||||||||||||| Sbjct: 29129 caccagttactaaatatgtg 29148
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtc 374 ||||||||||| | || ||||||||| ||||||| |||||||| Sbjct: 5149178 agcctccatgggagctgcccagtgatagaaggtgaaaaatggtc 5149135
>emb|BX829782.1|CNS0A19T Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB36ZG12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1082 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtc 374 ||||| || ||||||||||| |||||| |||| || |||||||| Sbjct: 703 agccttcacggtggatgtcctgtgatagaaggagagaaatggtc 746
>gb|AC155811.2| Mus musculus BAC clone RP24-185C13 from chromosome 12, complete sequence Length = 152790 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 atgatttcaacaccaaaaat 117 |||||||||||||||||||| Sbjct: 66728 atgatttcaacaccaaaaat 66747
>gb|AY088813.1| Arabidopsis thaliana clone 95931 mRNA, complete sequence Length = 1049 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 64 cagaaatatgaacctcactttgattacttcca 95 ||||||||||| |||||||||| |||||||| Sbjct: 421 cagaaatatgatgctcactttgactacttcca 452
>gb|AY087708.1| Arabidopsis thaliana clone 37828 mRNA, complete sequence Length = 1187 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtc 374 ||||| || ||||||||||| |||||| |||| || |||||||| Sbjct: 790 agccttcacggtggatgtcctgtgatagaaggagagaaatggtc 833
>gb|AC068655.3|AC068655 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome V, complete sequence Length = 89453 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtc 374 ||||| || ||||||||||| |||||| |||| || |||||||| Sbjct: 31651 agccttcacggtggatgtcctgtgatagaaggagagaaatggtc 31694
>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1715_A07 Length = 130907 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtc 374 ||||||||||| | || ||||||||| ||||||| |||||||| Sbjct: 15892 agcctccatgggagctgcccagtgatagaaggtgaaaaatggtc 15849
>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence Length = 256992 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gagggccttcaggttctcca 50 |||||||||||||||||||| Sbjct: 198017 gagggccttcaggttctcca 197998
>dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_E12 Length = 119691 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtc 374 ||||||||||| | || ||||||||| ||||||| |||||||| Sbjct: 105345 agcctccatgggagctgcccagtgatagaaggtgaaaaatggtc 105302
>dbj|AK121816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098K22, full insert sequence Length = 1126 Score = 40.1 bits (20), Expect = 6.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 331 agcctccatggtggatgtccagtgataaaaggtgacaaatggtc 374 ||||||||||| | || ||||||||| ||||||| |||||||| Sbjct: 781 agcctccatgggagctgcccagtgatagaaggtgaaaaatggtc 824
>gb|AC008160.11|AC008160 Mus musculus, clone 187_J_17, complete sequence Length = 206383 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tacttttctggagcatgagg 306 |||||||||||||||||||| Sbjct: 62869 tacttttctggagcatgagg 62888
>emb|AL671977.8| Mouse DNA sequence from clone RP23-171A16 on chromosome X, complete sequence Length = 193108 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 caataccattttataatgag 231 |||||||||||||||||||| Sbjct: 163896 caataccattttataatgag 163915 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,322,089 Number of Sequences: 3902068 Number of extensions: 4322089 Number of successful extensions: 74477 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74190 Number of HSP's gapped (non-prelim): 274 length of query: 490 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 468 effective length of database: 17,147,199,772 effective search space: 8024889493296 effective search space used: 8024889493296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)