ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags30m09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MURB_SALTY (P37417) UDP-N-acetylenolpyruvoylglucosamine reductas... 29 3.0
2MURB_SALTI (Q8Z316) UDP-N-acetylenolpyruvoylglucosamine reductas... 29 3.0
3MURB_SALCH (Q57H81) UDP-N-acetylenolpyruvoylglucosamine reductas... 29 3.0
4SYT2_AERPE (Q9YFY3) Probable threonyl-tRNA synthetase 2 (EC 6.1.... 28 6.7
5RPGF3_HUMAN (O95398) Rap guanine nucleotide exchange factor 3 (c... 28 8.7

>MURB_SALTY (P37417) UDP-N-acetylenolpyruvoylglucosamine reductase (EC|
           1.1.1.158) (UDP-N-acetylmuramate dehydrogenase)
          Length = 342

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 189 RTCEASFCVRLESGWSVRASMPPCAFGLR 103
           R C+   CV LE+G  +R S   C FG R
Sbjct: 131 RVCDYVDCVELETGKRLRLSAAECRFGYR 159



to top

>MURB_SALTI (Q8Z316) UDP-N-acetylenolpyruvoylglucosamine reductase (EC|
           1.1.1.158) (UDP-N-acetylmuramate dehydrogenase)
          Length = 342

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 189 RTCEASFCVRLESGWSVRASMPPCAFGLR 103
           R C+   CV LE+G  +R S   C FG R
Sbjct: 131 RVCDYVDCVELETGKRLRLSAAECRFGYR 159



to top

>MURB_SALCH (Q57H81) UDP-N-acetylenolpyruvoylglucosamine reductase (EC|
           1.1.1.158) (UDP-N-acetylmuramate dehydrogenase)
          Length = 342

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 189 RTCEASFCVRLESGWSVRASMPPCAFGLR 103
           R C+   CV LE+G  +R S   C FG R
Sbjct: 131 RVCDYVDCVELETGKRLRLSAAECRFGYR 159



to top

>SYT2_AERPE (Q9YFY3) Probable threonyl-tRNA synthetase 2 (EC 6.1.1.3)|
           (Threonine--tRNA ligase 2) (ThrRS 2)
          Length = 406

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 7   VKXLGLARRXXGPGWLDASFLNILGRRKRRCGAEAERARWHARTHTPATL 156
           V+  GL RR    G   AS + ++G+R+   G    R RW        TL
Sbjct: 334 VRGSGLGRRVREAGRSWASLVIVVGKREEETGTVVVRRRWEPGKQEVLTL 383



to top

>RPGF3_HUMAN (O95398) Rap guanine nucleotide exchange factor 3 (cAMP-regulated|
           guanine nucleotide exchange factor I) (cAMP-GEFI)
           (Exchange factor directly activated by cAMP 1) (Epac 1)
           (Rap1 guanine-nucleotide-exchange factor directly
           activated by cAMP)
          Length = 881

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
 Frame = +1

Query: 70  NILGRRKRRCGAEAERARWHARTHTPATLQP--------HTEARLAR 186
           N++   K R  A A R   H R+H P  L P        H ++++AR
Sbjct: 793 NLINFEKMRMMARAARMLHHCRSHNPVPLSPLRSRVSHLHEDSQVAR 839


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,921,132
Number of Sequences: 219361
Number of extensions: 271600
Number of successful extensions: 721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 80,573,946
effective HSP length: 38
effective length of database: 72,238,228
effective search space used: 1733717472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top