ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags30m06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185281.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 521 bits (263), Expect = e-145 Identities = 499/579 (86%), Gaps = 1/579 (0%) Strand = Plus / Plus Query: 14 gttgaactggatgcttcactagnaggacctgtacatgggtggttcattaaaggtttggag 73 |||||||||||||||||| | | ||||| |||||||||| || ||| ||||||||||| | Sbjct: 421 gttgaactggatgcttcatt-ggaggacttgtacatgggcggctcactaaaggtttggcg 479 Query: 74 agnnnnnnncatcataaaaccagcaccaggaaagagacgatgcaactgcaggaatgaagt 133 | | ||||||| ||||||||||||||||| |||||||| ||||| || ||||| Sbjct: 480 ggagaaaaacgtcataaagccagcaccaggaaagaggcgatgcaattgcagaaacgaagt 539 Query: 134 ttaccaccgtcaaattggtcctggaatgtatcaacaaatgaccgagcaggtctgcgacca 193 |||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 540 ttaccatagacaaattggtccaggaatgtatcaacaaatgaccgagcaggtctgtgacca 599 Query: 194 gtgtccaaatgtgaagtatgtacgagaaggtgattttttgaccgttgatattgagaaggg 253 |||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| || Sbjct: 600 gtgtgcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaagg 659 Query: 254 tatgcaagatggacaggaggtttcatttttcgaggaaggagagcctaagattgatggaga 313 ||||||||||| ||||| |||||||| || |||||||||||||||||||||||||| || Sbjct: 660 aatgcaagatgggcaggaagtttcattctttgaggaaggagagcctaagattgatggtga 719 Query: 314 acctggagacttgaagttcaggattcggacagcaccacatgaccgcttcagaagagaagg 373 ||||||||| |||||||| ||||| || |||||||||||||| || |||||||||||||| Sbjct: 720 acctggagatttgaagtttaggatccgaacagcaccacatgagcgattcagaagagaagg 779 Query: 374 caacgatctacatgcaacagttacaatctccctgctccaagctctggttggattcgagaa 433 ||| || || || |||| ||||||||||||||||||||||||||||| || |||||||| Sbjct: 780 caatgacctgcacacaactgttacaatctccctgctccaagctctggtcggcttcgagaa 839 Query: 434 gaacctcaagcatcttgacaaccatttggtccaaatcggctcgcagggtgttaccaagcc 493 || | | |||||||| ||||| ||| |||| |||| ||| | |||| | ||||| || Sbjct: 840 gaccattaagcatctggacaatcatatggtggaaattggcaccaaggggatcaccaaacc 899 Query: 494 caaggaggtaaggaaattcaaaggagagggcatgccattgcaccaaagcaacaagaaagg 553 ||||||||| ||||| |||||||| || || ||||||||| |||| |||||||||||||| Sbjct: 900 caaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaagg 959 Query: 554 cgatctgtatgtgacattcgaggtgttgttcccgaaaac 592 ||| || ||||| || |||||||| || ||||||||||| Sbjct: 960 cgacctatatgtaactttcgaggttttattcccgaaaac 998
>gb|AY111286.1| Zea mays CL10549_1 mRNA sequence Length = 1211 Score = 482 bits (243), Expect = e-133 Identities = 501/583 (85%), Gaps = 1/583 (0%) Strand = Plus / Minus Query: 10 gattgttgaactggatgcttcactagnaggacctgtacatgggtggttcattaaaggttt 69 |||||||||||||||||||||| ||| ||||| |||||||||| |||||||||||||||| Sbjct: 922 gattgttgaactggatgcttcattag-aggacttgtacatgggcggttcattaaaggttt 864 Query: 70 ggagagnnnnnnncatcataaaaccagcaccaggaaagagacgatgcaactgcaggaatg 129 |||||| ||||| ||||||| ||||||||||||||||| || |||||||| ||||| | Sbjct: 863 ggagagagnnnnntgtcataaagccagcaccaggaaagaggcgctgcaactgtaggaacg 804 Query: 130 aagtttaccaccgtcaaattggtcctggaatgtatcaacaaatgaccgagcaggtctgcg 189 |||||||||| || ||||| |||||||||||||||||||| ||||| ||||||||||||| Sbjct: 803 aagtttaccatcgacaaataggtcctggaatgtatcaacagatgactgagcaggtctgcg 744 Query: 190 accagtgtccaaatgtgaagtatgtacgagaaggtgattttttgaccgttgatattgaga 249 |||| |||||||||||||| | |||||||||||| || || ||||| ||||||||||||| Sbjct: 743 accaatgtccaaatgtgaaatttgtacgagaaggggaattcttgactgttgatattgaga 684 Query: 250 agggtatgcaagatggacaggaggtttcatttttcgaggaaggagagcctaagattgatg 309 |||| ||| |||||| ||||||||||| ||||||||| |||||||||||||||| Sbjct: 683 agggaatgaaagatgcacaggaggttttgnnnnncgaggaaggcgagcctaagattgatg 624 Query: 310 gagaacctggagacttgaagttcaggattcggacagcaccacatgaccgcttcagaagag 369 | ||||| || || |||||||||||||| || |||||| ||| || ||||| | ||| Sbjct: 623 gcgaaccaggcgatttgaagttcaggatccgaacagcattacacagccacttcaaacgag 564 Query: 370 aaggcaacgatctacatgcaacagttacaatctccctgctccaagctctggttggattcg 429 ||||||| || || ||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct: 563 aaggcaatgacctgcatgcaacagttacaatatccctgctgcaagctctggttggtttcg 504 Query: 430 agaagaacctcaagcatcttgacaaccatttggtccaaatcggctcgcagggtgttacca 489 |||||| |||||||||||||||||||| |||| |||| ||| | |||| | |||| Sbjct: 503 agaagacaatcaagcatcttgacaaccatctggtagaaattggcaccaagggcatcacca 444 Query: 490 agcccaaggaggtaaggaaattcaaaggagagggcatgccattgcaccaaagcaacaaga 549 | || |||||| | ||||| |||||||| || ||||||||| | ||||||||||||||| Sbjct: 443 aaccgaaggagatcaggaagttcaaaggtgaaggcatgccactataccaaagcaacaaga 384 Query: 550 aaggcgatctgtatgtgacattcgaggtgttgttcccgaaaac 592 |||| || ||||||||||||||||||||||| ||||||||||| Sbjct: 383 aaggtgacctgtatgtgacattcgaggtgttattcccgaaaac 341
>dbj|AK062718.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-C11, full insert sequence Length = 827 Score = 369 bits (186), Expect = 7e-99 Identities = 342/394 (86%) Strand = Plus / Plus Query: 199 caaatgtgaagtatgtacgagaaggtgattttttgaccgttgatattgagaagggtatgc 258 |||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||| Sbjct: 4 caaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgc 63 Query: 259 aagatggacaggaggtttcatttttcgaggaaggagagcctaagattgatggagaacctg 318 ||||||| ||||| |||||||| || |||||||||||||||||||||||||| ||||||| Sbjct: 64 aagatgggcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctg 123 Query: 319 gagacttgaagttcaggattcggacagcaccacatgaccgcttcagaagagaaggcaacg 378 |||| |||||||| ||||| || |||||||||||||| || ||||||||||||||||| | Sbjct: 124 gagatttgaagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatg 183 Query: 379 atctacatgcaacagttacaatctccctgctccaagctctggttggattcgagaagaacc 438 | || || |||| ||||||||||||||||||||||||||||| || |||||||||| | Sbjct: 184 acctgcacacaactgttacaatctccctgctccaagctctggtcggcttcgagaagacca 243 Query: 439 tcaagcatcttgacaaccatttggtccaaatcggctcgcagggtgttaccaagcccaagg 498 | |||||||| ||||| ||| |||| |||| ||| | |||| | ||||| ||||||| Sbjct: 244 ttaagcatctggacaatcatatggtggaaattggcaccaaggggatcaccaaacccaagg 303 Query: 499 aggtaaggaaattcaaaggagagggcatgccattgcaccaaagcaacaagaaaggcgatc 558 |||| ||||| |||||||| || || ||||||||| |||| ||||||||||||||||| | Sbjct: 304 aggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacc 363 Query: 559 tgtatgtgacattcgaggtgttgttcccgaaaac 592 | ||||| || |||||||| || ||||||||||| Sbjct: 364 tatatgtaactttcgaggttttattcccgaaaac 397
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 127 bits (64), Expect = 5e-26 Identities = 91/100 (91%) Strand = Plus / Plus Query: 85 tcataaaaccagcaccaggaaagagacgatgcaactgcaggaatgaagtttaccaccgtc 144 ||||||| ||||||||||||||||| |||||||| ||||| || ||||||||||| | | Sbjct: 122801 tcataaagccagcaccaggaaagaggcgatgcaattgcagaaacgaagtttaccatagac 122860 Query: 145 aaattggtcctggaatgtatcaacaaatgaccgagcaggt 184 |||||||||| ||||||||||||||||||||||||||||| Sbjct: 122861 aaattggtccaggaatgtatcaacaaatgaccgagcaggt 122900 Score = 123 bits (62), Expect = 7e-25 Identities = 83/90 (92%) Strand = Plus / Plus Query: 181 aggtctgcgaccagtgtccaaatgtgaagtatgtacgagaaggtgattttttgaccgttg 240 ||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||| Sbjct: 123018 aggtctgtgaccagtgtgcaaatgtgaagtatgtgcgagaaggtgattttttgactgttg 123077 Query: 241 atattgagaagggtatgcaagatggacagg 270 |||||||||| || ||||||||||| |||| Sbjct: 123078 atattgagaaaggaatgcaagatgggcagg 123107 Score = 101 bits (51), Expect = 3e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 486 accaagcccaaggaggtaaggaaattcaaaggagagggcatgccattgcaccaaagcaac 545 ||||| ||||||||||| ||||| |||||||| || || ||||||||| |||| |||||| Sbjct: 124490 accaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaac 124549 Query: 546 aagaaaggcgatctgtatgtgacattcgaggtgttgttcccgaaaac 592 ||||||||||| || ||||| || |||||||| || ||||||||||| Sbjct: 124550 aagaaaggcgacctatatgtaactttcgaggttttattcccgaaaac 124596 Score = 85.7 bits (43), Expect = 2e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 267 caggaggtttcatttttcgaggaaggagagcctaagattgatggagaacctggagacttg 326 ||||| |||||||| || |||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 123655 caggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttg 123714 Query: 327 aag 329 ||| Sbjct: 123715 aag 123717 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 328 agttcaggattcggacagcaccacatgaccgcttcagaagagaaggcaacgatctacatg 387 |||| ||||| || |||||||||||||| || ||||||||||||||||| || || || Sbjct: 123812 agtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcaca 123871 Query: 388 caacagttacaatctccctg 407 |||| ||||||||||||||| Sbjct: 123872 caactgttacaatctccctg 123891 Score = 50.1 bits (25), Expect = 0.009 Identities = 49/57 (85%) Strand = Plus / Plus Query: 407 gctccaagctctggttggattcgagaagaacctcaagcatcttgacaaccatttggt 463 ||||||||||||||| || |||||||||| | | |||||||| ||||| ||| |||| Sbjct: 124303 gctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggt 124359 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/54 (87%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 14 gttgaactggatgcttcactagnaggacctgtacatgggtggttcattaaaggt 67 |||||||||||||||||| | | ||||| |||||||||| || ||| ||||||| Sbjct: 122527 gttgaactggatgcttca-ttggaggacttgtacatgggcggctcactaaaggt 122579
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 127 bits (64), Expect = 5e-26 Identities = 91/100 (91%) Strand = Plus / Plus Query: 85 tcataaaaccagcaccaggaaagagacgatgcaactgcaggaatgaagtttaccaccgtc 144 ||||||| ||||||||||||||||| |||||||| ||||| || ||||||||||| | | Sbjct: 3245084 tcataaagccagcaccaggaaagaggcgatgcaattgcagaaacgaagtttaccatagac 3245143 Query: 145 aaattggtcctggaatgtatcaacaaatgaccgagcaggt 184 |||||||||| ||||||||||||||||||||||||||||| Sbjct: 3245144 aaattggtccaggaatgtatcaacaaatgaccgagcaggt 3245183 Score = 123 bits (62), Expect = 7e-25 Identities = 83/90 (92%) Strand = Plus / Plus Query: 181 aggtctgcgaccagtgtccaaatgtgaagtatgtacgagaaggtgattttttgaccgttg 240 ||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||| Sbjct: 3245301 aggtctgtgaccagtgtgcaaatgtgaagtatgtgcgagaaggtgattttttgactgttg 3245360 Query: 241 atattgagaagggtatgcaagatggacagg 270 |||||||||| || ||||||||||| |||| Sbjct: 3245361 atattgagaaaggaatgcaagatgggcagg 3245390 Score = 101 bits (51), Expect = 3e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 486 accaagcccaaggaggtaaggaaattcaaaggagagggcatgccattgcaccaaagcaac 545 ||||| ||||||||||| ||||| |||||||| || || ||||||||| |||| |||||| Sbjct: 3246773 accaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaac 3246832 Query: 546 aagaaaggcgatctgtatgtgacattcgaggtgttgttcccgaaaac 592 ||||||||||| || ||||| || |||||||| || ||||||||||| Sbjct: 3246833 aagaaaggcgacctatatgtaactttcgaggttttattcccgaaaac 3246879 Score = 85.7 bits (43), Expect = 2e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 267 caggaggtttcatttttcgaggaaggagagcctaagattgatggagaacctggagacttg 326 ||||| |||||||| || |||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 3245938 caggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttg 3245997 Query: 327 aag 329 ||| Sbjct: 3245998 aag 3246000 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 328 agttcaggattcggacagcaccacatgaccgcttcagaagagaaggcaacgatctacatg 387 |||| ||||| || |||||||||||||| || ||||||||||||||||| || || || Sbjct: 3246095 agtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcaca 3246154 Query: 388 caacagttacaatctccctg 407 |||| ||||||||||||||| Sbjct: 3246155 caactgttacaatctccctg 3246174 Score = 50.1 bits (25), Expect = 0.009 Identities = 49/57 (85%) Strand = Plus / Plus Query: 407 gctccaagctctggttggattcgagaagaacctcaagcatcttgacaaccatttggt 463 ||||||||||||||| || |||||||||| | | |||||||| ||||| ||| |||| Sbjct: 3246586 gctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggt 3246642 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/54 (87%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 14 gttgaactggatgcttcactagnaggacctgtacatgggtggttcattaaaggt 67 |||||||||||||||||| | | ||||| |||||||||| || ||| ||||||| Sbjct: 3244810 gttgaactggatgcttca-ttggaggacttgtacatgggcggctcactaaaggt 3244862
>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05, complete sequence Length = 167317 Score = 127 bits (64), Expect = 5e-26 Identities = 91/100 (91%) Strand = Plus / Plus Query: 85 tcataaaaccagcaccaggaaagagacgatgcaactgcaggaatgaagtttaccaccgtc 144 ||||||| ||||||||||||||||| |||||||| ||||| || ||||||||||| | | Sbjct: 38908 tcataaagccagcaccaggaaagaggcgatgcaattgcagaaacgaagtttaccatagac 38967 Query: 145 aaattggtcctggaatgtatcaacaaatgaccgagcaggt 184 |||||||||| ||||||||||||||||||||||||||||| Sbjct: 38968 aaattggtccaggaatgtatcaacaaatgaccgagcaggt 39007 Score = 123 bits (62), Expect = 7e-25 Identities = 83/90 (92%) Strand = Plus / Plus Query: 181 aggtctgcgaccagtgtccaaatgtgaagtatgtacgagaaggtgattttttgaccgttg 240 ||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||| Sbjct: 39125 aggtctgtgaccagtgtgcaaatgtgaagtatgtgcgagaaggtgattttttgactgttg 39184 Query: 241 atattgagaagggtatgcaagatggacagg 270 |||||||||| || ||||||||||| |||| Sbjct: 39185 atattgagaaaggaatgcaagatgggcagg 39214 Score = 101 bits (51), Expect = 3e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 486 accaagcccaaggaggtaaggaaattcaaaggagagggcatgccattgcaccaaagcaac 545 ||||| ||||||||||| ||||| |||||||| || || ||||||||| |||| |||||| Sbjct: 40597 accaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaac 40656 Query: 546 aagaaaggcgatctgtatgtgacattcgaggtgttgttcccgaaaac 592 ||||||||||| || ||||| || |||||||| || ||||||||||| Sbjct: 40657 aagaaaggcgacctatatgtaactttcgaggttttattcccgaaaac 40703 Score = 85.7 bits (43), Expect = 2e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 267 caggaggtttcatttttcgaggaaggagagcctaagattgatggagaacctggagacttg 326 ||||| |||||||| || |||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 39762 caggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttg 39821 Query: 327 aag 329 ||| Sbjct: 39822 aag 39824 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 328 agttcaggattcggacagcaccacatgaccgcttcagaagagaaggcaacgatctacatg 387 |||| ||||| || |||||||||||||| || ||||||||||||||||| || || || Sbjct: 39919 agtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcaca 39978 Query: 388 caacagttacaatctccctg 407 |||| ||||||||||||||| Sbjct: 39979 caactgttacaatctccctg 39998 Score = 50.1 bits (25), Expect = 0.009 Identities = 49/57 (85%) Strand = Plus / Plus Query: 407 gctccaagctctggttggattcgagaagaacctcaagcatcttgacaaccatttggt 463 ||||||||||||||| || |||||||||| | | |||||||| ||||| ||| |||| Sbjct: 40410 gctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggt 40466 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/54 (87%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 14 gttgaactggatgcttcactagnaggacctgtacatgggtggttcattaaaggt 67 |||||||||||||||||| | | ||||| |||||||||| || ||| ||||||| Sbjct: 38634 gttgaactggatgcttca-ttggaggacttgtacatgggcggctcactaaaggt 38686
>gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH001H24, complete sequence Length = 118144 Score = 83.8 bits (42), Expect = 6e-13 Identities = 84/98 (85%) Strand = Plus / Minus Query: 87 ataaaaccagcaccaggaaagagacgatgcaactgcaggaatgaagtttaccaccgtcaa 146 ||||||||||| || ||||||||| |||||||||||| |||| ||||| ||| | ||| Sbjct: 7943 ataaaaccagctcctggaaagagaaattgcaactgcagggatgaggtttatcacaggcaa 7884 Query: 147 attggtcctggaatgtatcaacaaatgaccgagcaggt 184 |||||||||||||||| ||||| ||||| |||||||| Sbjct: 7883 attggtcctggaatgttccaacagatgacagagcaggt 7846 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 342 acagcaccacatgaccgcttcagaagagaaggcaacgatctaca 385 ||||||||||||| ||| ||||| ||||| |||||||||||||| Sbjct: 7422 acagcaccacatgcccggttcaggagagatggcaacgatctaca 7379
>ref|NM_116125.2| Arabidopsis thaliana heat shock protein binding / unfolded protein binding AT3G62600 mRNA, complete cds Length = 1453 Score = 73.8 bits (37), Expect = 6e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 87 ataaaaccagcaccaggaaagagacgatgcaactgcaggaatgaagtttaccaccgtcaa 146 ||||||||||| || ||||||||| || ||||||||||| || || || ||| | ||| Sbjct: 654 ataaaaccagctcctggaaagagaaagtgtaactgcaggaacgaggtctatcacagacaa 713 Query: 147 attggtcctggaatgtatcaacaaatgaccgagcaggtctg 187 |||||||||||||||| ||||| ||||| ||||||||||| Sbjct: 714 attggtcctggaatgttccaacagatgacagagcaggtctg 754 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 345 gcaccacatgaccgcttcagaagagaaggcaacgatctaca 385 |||||||||| ||| |||||||| || |||||||||||||| Sbjct: 912 gcaccacatgcccgtttcagaagggatggcaacgatctaca 952
>gb|AY125534.1| Arabidopsis thaliana At3g62600/F26K9_30 mRNA, complete cds Length = 1041 Score = 73.8 bits (37), Expect = 6e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 87 ataaaaccagcaccaggaaagagacgatgcaactgcaggaatgaagtttaccaccgtcaa 146 ||||||||||| || ||||||||| || ||||||||||| || || || ||| | ||| Sbjct: 490 ataaaaccagctcctggaaagagaaagtgtaactgcaggaacgaggtctatcacagacaa 549 Query: 147 attggtcctggaatgtatcaacaaatgaccgagcaggtctg 187 |||||||||||||||| ||||| ||||| ||||||||||| Sbjct: 550 attggtcctggaatgttccaacagatgacagagcaggtctg 590 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 345 gcaccacatgaccgcttcagaagagaaggcaacgatctaca 385 |||||||||| ||| |||||||| || |||||||||||||| Sbjct: 748 gcaccacatgcccgtttcagaagggatggcaacgatctaca 788
>gb|AY094429.1| Arabidopsis thaliana AT3g62600/F26K9_30 mRNA, complete cds Length = 1365 Score = 73.8 bits (37), Expect = 6e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 87 ataaaaccagcaccaggaaagagacgatgcaactgcaggaatgaagtttaccaccgtcaa 146 ||||||||||| || ||||||||| || ||||||||||| || || || ||| | ||| Sbjct: 623 ataaaaccagctcctggaaagagaaagtgtaactgcaggaacgaggtctatcacagacaa 682 Query: 147 attggtcctggaatgtatcaacaaatgaccgagcaggtctg 187 |||||||||||||||| ||||| ||||| ||||||||||| Sbjct: 683 attggtcctggaatgttccaacagatgacagagcaggtctg 723 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 345 gcaccacatgaccgcttcagaagagaaggcaacgatctaca 385 |||||||||| ||| |||||||| || |||||||||||||| Sbjct: 881 gcaccacatgcccgtttcagaagggatggcaacgatctaca 921
>gb|AY087640.1| Arabidopsis thaliana clone 37292 mRNA, complete sequence Length = 1352 Score = 73.8 bits (37), Expect = 6e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 87 ataaaaccagcaccaggaaagagacgatgcaactgcaggaatgaagtttaccaccgtcaa 146 ||||||||||| || ||||||||| || ||||||||||| || || || ||| | ||| Sbjct: 654 ataaaaccagctcctggaaagagaaagtgtaactgcaggaacgaggtctatcacagacaa 713 Query: 147 attggtcctggaatgtatcaacaaatgaccgagcaggtctg 187 |||||||||||||||| ||||| ||||| ||||||||||| Sbjct: 714 attggtcctggaatgttccaacagatgacagagcaggtctg 754 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 345 gcaccacatgaccgcttcagaagagaaggcaacgatctaca 385 |||||||||| ||| |||||||| || |||||||||||||| Sbjct: 912 gcaccacatgcccgtttcagaagggatggcaacgatctaca 952
>emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9 Length = 110257 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 87 ataaaaccagcaccaggaaagagacgatgcaactgcaggaatgaagtttaccaccgtcaa 146 ||||||||||| || ||||||||| || ||||||||||| || || || ||| | ||| Sbjct: 5067 ataaaaccagctcctggaaagagaaagtgtaactgcaggaacgaggtctatcacagacaa 5008 Query: 147 attggtcctggaatgtatcaacaaatgaccgagcaggt 184 |||||||||||||||| ||||| ||||| |||||||| Sbjct: 5007 attggtcctggaatgttccaacagatgacagagcaggt 4970 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 345 gcaccacatgaccgcttcagaagagaaggcaacgatctaca 385 |||||||||| ||| |||||||| || |||||||||||||| Sbjct: 4498 gcaccacatgcccgtttcagaagggatggcaacgatctaca 4458
>gb|AC145329.35| Medicago truncatula clone mth2-8i21, complete sequence Length = 123357 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/97 (83%) Strand = Plus / Minus Query: 88 taaaaccagcaccaggaaagagacgatgcaactgcaggaatgaagtttaccaccgtcaaa 147 |||| ||||| || ||||| ||||| || ||||| || ||||| ||||| ||| | |||| Sbjct: 68007 taaagccagctcctggaaaaagacgctgtaactgtagaaatgaggtttatcacaggcaaa 67948 Query: 148 ttggtcctggaatgtatcaacaaatgaccgagcaggt 184 |||| ||||| |||| |||||||||||| |||||||| Sbjct: 67947 ttgggcctggcatgtttcaacaaatgacagagcaggt 67911 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 504 aggaaattcaaaggagagggcatgccattgca 535 ||||| |||||||| ||||| ||||||||||| Sbjct: 64996 aggaagttcaaaggggagggtatgccattgca 64965
>gb|AC147802.2| Oryza sativa chromosome 3 BAC OSJNBb0013C14 genomic sequence, complete sequence Length = 132981 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 231 ttgaccgttgatattgagaagggtatgcaagatg 264 ||||| ||||||||||||||||| |||||||||| Sbjct: 111163 ttgacagttgatattgagaagggaatgcaagatg 111130
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 231 ttgaccgttgatattgagaagggtatgcaagatg 264 ||||| ||||||||||||||||| |||||||||| Sbjct: 18206178 ttgacagttgatattgagaagggaatgcaagatg 18206145
>gb|AC167227.1| Oryza sativa (japonica cultivar-group) chromosome unknown clone OSJNBb0026K11, complete sequence Length = 129643 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 231 ttgaccgttgatattgagaagggtatgcaagatg 264 ||||| ||||||||||||||||| |||||||||| Sbjct: 95630 ttgactgttgatattgagaagggaatgcaagatg 95597 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 231 ttgaccgttgatattgagaagggtatgcaagatg 264 ||||| ||||||||||||||||| |||||||||| Sbjct: 52213 ttgactgttgatattgagaagggaatgcaagatg 52180
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 231 ttgaccgttgatattgagaagggtatgcaagatg 264 ||||| ||||||||||||||||| |||||||||| Sbjct: 18199719 ttgacagttgatattgagaagggaatgcaagatg 18199686
>gb|AC160949.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0006E22, complete sequence Length = 128256 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 231 ttgaccgttgatattgagaagggtatgcaagatg 264 ||||| ||||||||||||||||| |||||||||| Sbjct: 111931 ttgactgttgatattgagaagggaatgcaagatg 111898
>dbj|AK101901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071C01, full insert sequence Length = 623 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 231 ttgaccgttgatattgagaagggtatgcaagatg 264 ||||| ||||||||||||||||| |||||||||| Sbjct: 428 ttgacagttgatattgagaagggaatgcaagatg 461
>dbj|AB072279.1| Ipomoea nil transposon Tpn109 DNA, complete sequence Length = 6834 Score = 48.1 bits (24), Expect = 0.034 Identities = 72/88 (81%) Strand = Plus / Plus Query: 88 taaaaccagcaccaggaaagagacgatgcaactgcaggaatgaagtttaccaccgtcaaa 147 |||| ||||| || || ||||| ||||| |||||| | ||||| ||||||||| | |||| Sbjct: 3189 taaagccagctcctggtaagaggcgatgtaactgccgcaatgaggtttaccacaggcaaa 3248 Query: 148 ttggtcctggaatgtatcaacaaatgac 175 ||||||| || |||| ||| || ||||| Sbjct: 3249 ttggtccagggatgtttcagcagatgac 3276
>gb|AC146947.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057M18 map near E10005S, complete sequence Length = 140920 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Minus Query: 231 ttgaccgttgatattgagaagggtatgcaagatg 264 ||||| ||| ||||||||||||| |||||||||| Sbjct: 94077 ttgactgttaatattgagaagggaatgcaagatg 94044
>gb|AC138595.10| Mus musculus chromosome 1, clone RP24-286D13, complete sequence Length = 172490 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 401 ctccctgctccaagctctggtt 422 |||||||||||||||||||||| Sbjct: 82775 ctccctgctccaagctctggtt 82754
>gb|DQ440287.1| Aedes aegypti clone AET-365 molecular chaperone mRNA, complete cds Length = 1080 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 250 agggtatgcaagatggacagga 271 |||||||||||||||||||||| Sbjct: 644 agggtatgcaagatggacagga 665
>emb|BX470231.8| Zebrafish DNA sequence from clone CH211-63H10 in linkage group 3, complete sequence Length = 180778 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 86 cataaaaccagcaccaggaaagagac 111 |||||||||||||||||| ||||||| Sbjct: 150008 cataaaaccagcaccaggtaagagac 150033
>gb|AF312994.1|AF312994 Mus musculus chromosome 1 clone MML, complete sequence Length = 228283 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 401 ctccctgctccaagctctggtt 422 |||||||||||||||||||||| Sbjct: 171221 ctccctgctccaagctctggtt 171200
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Minus Query: 231 ttgaccgttgatattgagaagggtatgcaagatg 264 ||||| ||| ||||||||||||| |||||||||| Sbjct: 13736268 ttgactgttaatattgagaagggaatgcaagatg 13736235
>gb|AF239932.1|AF239932 Euphorbia esula DnaJ protein mRNA, complete cds Length = 1698 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 244 ttgagaagggtatgcaagatggacag 269 ||||||||||||||||| |||||||| Sbjct: 761 ttgagaagggtatgcaaaatggacag 786
>gb|AF085275.1|AF085275 Hevea brasiliensis DnaJ protein mRNA, complete cds Length = 1562 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 244 ttgagaagggtatgcaagatggacag 269 ||||||||||||||||| |||||||| Sbjct: 765 ttgagaagggtatgcaaaatggacag 790
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Minus Query: 231 ttgaccgttgatattgagaagggtatgcaagatg 264 ||||| ||| ||||||||||||| |||||||||| Sbjct: 13818266 ttgactgttaatattgagaagggaatgcaagatg 13818233
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 428 cgagaagaacctcaagcatcttga 451 |||||||||||||||||| ||||| Sbjct: 393278 cgagaagaacctcaagcaccttga 393301
>emb|BX890590.11| Zebrafish DNA sequence from clone DKEY-15H19 in linkage group 3, complete sequence Length = 141661 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 atctccctgctccaagctct 418 |||||||||||||||||||| Sbjct: 117616 atctccctgctccaagctct 117597
>ref|XM_567811.1| Cryptococcus neoformans var. neoformans JEC21 purine nucleotide binding protein (CNK01320) partial mRNA Length = 3163 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 428 cgagaagaacctcaagcatcttga 451 |||||||||||||||||| ||||| Sbjct: 2266 cgagaagaacctcaagcaccttga 2289
>emb|AL118513.17|HSDJ685L9 Human DNA sequence from clone RP4-685L9 on chromosome 20 Contains the gene for a novel protein (FLJ90166), the 5' end of a nove genel (LOC149773) and two CpG islands, complete sequence Length = 92835 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 gaacctggagacttgaagttcagg 335 |||||||||||| ||||||||||| Sbjct: 63909 gaacctggagacatgaagttcagg 63932
>gb|AC138023.2| Homo sapiens chromosome 3 clone RP11-7G8, complete sequence Length = 153994 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 532 tgcaccaaagcaacaagaaa 551 |||||||||||||||||||| Sbjct: 74231 tgcaccaaagcaacaagaaa 74250
>gb|AC026205.6|AC026205 Homo sapiens chromosome 3 clone RP11-61I9 map 3p, complete sequence Length = 176669 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gttgatattgagaagggtat 256 |||||||||||||||||||| Sbjct: 15245 gttgatattgagaagggtat 15226
>gb|AC002526.1|AC002526 Human PAC clone RP4-558L21 from Xq23, complete sequence Length = 134580 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 532 tgcaccaaagcaacaagaaa 551 |||||||||||||||||||| Sbjct: 5247 tgcaccaaagcaacaagaaa 5266
>gb|AC154015.3| Mus musculus 6 BAC RP24-194J12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 151119 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 524 catgccattgcaccaaagcaacaa 547 ||||| |||||||||||||||||| Sbjct: 47375 catgcaattgcaccaaagcaacaa 47352
>gb|AC122860.5| Mus musculus BAC clone RP23-135A22 from 12, complete sequence Length = 233864 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 cctgctccaagctctggttg 423 |||||||||||||||||||| Sbjct: 132107 cctgctccaagctctggttg 132126
>gb|AC026167.5| Homo sapiens chromosome 3 clone RP11-140B10 map 3p, complete sequence Length = 188867 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gttgatattgagaagggtat 256 |||||||||||||||||||| Sbjct: 128447 gttgatattgagaagggtat 128466 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,043,614 Number of Sequences: 3902068 Number of extensions: 5043614 Number of successful extensions: 103411 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103144 Number of HSP's gapped (non-prelim): 261 length of query: 602 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 579 effective length of database: 17,143,297,704 effective search space: 9925969370616 effective search space used: 9925969370616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
