ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags30m04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing pro... 31 3.5
2CFTR_TRIVU (Q5D1Z7) Cystic fibrosis transmembrane conductance re... 31 3.5
3CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing pro... 31 3.5
4LKHA4_YEAST (Q10740) Probable leukotriene A-4 hydrolase (EC 3.3.... 30 7.8

>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7|
          Length = 1303

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 471 CVLHLHCNFSHFLQERRNKERCKFF 397
           C    HCNFSH ++  + +E CKF+
Sbjct: 404 CTWGDHCNFSHDIELPKKRELCKFY 428



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>CFTR_TRIVU (Q5D1Z7) Cystic fibrosis transmembrane conductance regulator (CFTR)|
           (cAMP-dependent chloride channel) (ATP-binding cassette
           transporter sub-family C member 7)
          Length = 1478

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +1

Query: 214 NLHVLVKQTTSSHKFWSSLGSCDHGAFLEGFELLGSRKAKN-TFLLCTASCSDIAGSGLD 390
           +L + VKQ+ S  K    + + DHG F   F LLG+   KN +F +       +AGS   
Sbjct: 407 DLFIKVKQSNSDGK----IPNGDHGLFFSNFSLLGTPVLKNISFKIEKGQLLAVAGSTGA 462

Query: 391 SCEELASFFVSSLLKKMGKI 450
               L    +  L    GKI
Sbjct: 463 GKTSLLMLIMGELEPSEGKI 482



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>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 471 CVLHLHCNFSHFLQERRNKERCKFF 397
           C    HCNFSH ++  + +E CKF+
Sbjct: 403 CTWGDHCNFSHDIELPKKRELCKFY 427



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>LKHA4_YEAST (Q10740) Probable leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4|
           hydrolase) (Leukotriene A(4) hydrolase)
          Length = 671

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
 Frame = +1

Query: 307 ELLGSRKAKNTFLLCTASCSD-----IAGSGLDSCEELASFFVSSLLKKMGK--IAMQME 465
           E LGSR   N      ASC+D     I     D C  L   +++S   K GK  +  Q+E
Sbjct: 134 EPLGSRLVINN-----ASCNDNFTLNIQFRTTDKCTALQ--WLNSKQTKGGKPYVFSQLE 186

Query: 466 DTHMKIVFSCFSMISLKLKTEAEFSTYAVHMLAPLYKVAEGFAGKVITDEVKQS 627
             H + +F CF   S+K       ST+   + +PL  V   F+G  I D  K +
Sbjct: 187 AIHARSLFPCFDTPSVK-------STFTASIESPLPVV---FSGIRIEDTSKDT 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,561,274
Number of Sequences: 219361
Number of extensions: 1692872
Number of successful extensions: 4435
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4434
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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