ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags30l18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MORC4_MOUSE (Q8BMD7) MORC family CW-type zinc finger 4 (Zinc fin... 74 1e-13
2MORC4_HUMAN (Q8TE76) MORC family CW-type zinc finger 4 (Zinc fin... 71 9e-13
3MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc fin... 66 3e-11
4MORC3_HUMAN (Q14149) MORC family CW-type zinc finger 3 (Zinc fin... 64 1e-10
5DMD_MOUSE (P11531) Dystrophin 32 0.48
6DMD_CANFA (O97592) Dystrophin 30 3.1
7DMD_HUMAN (P11532) Dystrophin 30 3.1
8PPCK_AZOSE (Q5P2P8) Phosphoenolpyruvate carboxykinase [GTP] (EC ... 29 5.3
9KTR7_YEAST (P40504) Probable mannosyltransferase KTR7 (EC 2.4.1.... 29 5.3
10DMD_PIG (Q5GN48) Dystrophin 29 5.3
11SENP3_HUMAN (Q9H4L4) Sentrin-specific protease 3 (EC 3.4.22.-) (... 28 6.9
12YK54_YEAST (P36154) Hypothetical 18.4 kDa protein in SIS2-MTD1 i... 28 6.9
13SENP3_MOUSE (Q9EP97) Sentrin-specific protease 3 (EC 3.4.22.-) (... 28 6.9
14PCXA_PSEPU (P00436) Protocatechuate 3,4-dioxygenase alpha chain ... 28 9.0

>MORC4_MOUSE (Q8BMD7) MORC family CW-type zinc finger 4 (Zinc finger CW-type|
           coiled-coil domain protein 2)
          Length = 928

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 1/128 (0%)
 Frame = +1

Query: 1   TMRLGADVIVFTQNQKNWTPTRSIGLLSYTFLMETGCDDVLVPTVDYHYDLTTSSYTQLL 180
           +MRLG D +VFT+N      T ++GLLS T+L       V+VP V +     +    +++
Sbjct: 129 SMRLGKDALVFTKNGN----TLAVGLLSQTYLECIQAQAVIVPIVPF-----SQQNKKMI 179

Query: 181 RHNQKLXSSNLAILLKWSPFGSEAELLKQFDDM-GEHGTKIIVFNLWFNDDGDMELDFNS 357
                L S  L  +L +S F  E +LL QFD + G+ GT+++++N+  N DG  ELDF++
Sbjct: 180 VTEDSLPS--LEAILNYSIFNCEKDLLSQFDAIPGKKGTRVLIWNIRRNKDGKSELDFDT 237

Query: 358 DKKDILIT 381
           D+ DIL++
Sbjct: 238 DQYDILVS 245



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>MORC4_HUMAN (Q8TE76) MORC family CW-type zinc finger 4 (Zinc finger CW-type|
           coiled-coil domain protein 2)
          Length = 937

 Score = 71.2 bits (173), Expect = 9e-13
 Identities = 46/133 (34%), Positives = 77/133 (57%), Gaps = 6/133 (4%)
 Frame = +1

Query: 1   TMRLGADVIVFTQNQKNWTPTRSIGLLSYTFLMETGCDDVLVPTVDYHYDLTTSSYTQLL 180
           +MRLG D +VFT+N      T ++GLLS T+L       V+VP V ++            
Sbjct: 129 SMRLGKDALVFTKNGG----TLTVGLLSQTYLECVQAQAVIVPIVPFN------------ 172

Query: 181 RHNQKLXSS-----NLAILLKWSPFGSEAELLKQFDDM-GEHGTKIIVFNLWFNDDGDME 342
           + N+K+  +     +L  +L +S F  E +LL QFD + G+ GT+++++N+  N +G  E
Sbjct: 173 QQNKKMIITEDSLPSLEAILNYSIFNRENDLLAQFDAIPGKKGTRVLIWNIRRNKNGKSE 232

Query: 343 LDFNSDKKDILIT 381
           LDF++D+ DIL++
Sbjct: 233 LDFDTDQYDILVS 245



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>MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc finger CW-type|
           coiled-coil domain protein 1)
          Length = 970

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
 Frame = +1

Query: 1   TMRLGADVIVFTQNQKNWTPTRSIGLLSYTFLMETGCDDVLVPTVDYHYDLTTSSYTQLL 180
           +MR+G D I+FT+ +   T       LS TF  E G D+V+VP   ++     +   + +
Sbjct: 46  SMRIGKDFILFTKKEDTMTCL----FLSRTFHEEEGIDEVIVPLPTWN-----ARTREPV 96

Query: 181 RHNQKLXSSNLAILLKWSPFGSEAELLKQFDDM-GEHGTKIIVFNLWFNDDGDMELDFNS 357
             N +  +    ++ K+SPF +E E++ QF  + G+ GT +I+FNL   D+G+ ELD  S
Sbjct: 97  TDNVEKFAIETELIYKYSPFRTEEEVMTQFMKIPGDSGTLVIIFNLKLMDNGEPELDIIS 156

Query: 358 DKKDI 372
           + +DI
Sbjct: 157 NPRDI 161



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>MORC3_HUMAN (Q14149) MORC family CW-type zinc finger 3 (Zinc finger CW-type|
           coiled-coil domain protein 3)
          Length = 939

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
 Frame = +1

Query: 1   TMRLGADVIVFTQNQKNWTPTRSIGLLSYTFLMETGCDDVLVPTVDYHYDLTTSSYTQLL 180
           +MRLG D IVFT+N +    + S+GLLS T+L     + V+VP V +      + + Q++
Sbjct: 108 SMRLGKDAIVFTKNGE----SMSVGLLSQTYLEVIKAEHVVVPIVAF------NKHRQMI 157

Query: 181 RHNQKLXSSNLAILLKWSPFGSEAELLKQFDD-MGEHGTKIIVFNLWFNDDGDMELDFNS 357
             N     ++LA +L+ S F +E +LL + D  +G+ GT+II++NL    +   E DF  
Sbjct: 158 --NLAESKASLAAILEHSLFSTEQKLLAELDAIIGKKGTRIIIWNLRSYKNA-TEFDFEK 214

Query: 358 DKKDILI 378
           DK DI I
Sbjct: 215 DKYDIRI 221



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>DMD_MOUSE (P11531) Dystrophin|
          Length = 3678

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = -3

Query: 408  VSFDLLLCPSN-----EDILLIGVEIKLHVPIIIEPEVEYNYLCPVLSHIIELFKQLS 250
            + F L   P+N     E+  +I  E+K+H+P +    VE   +   LSH + L+K LS
Sbjct: 1458 MKFRLFQKPANFEQRLEESKMILDEVKMHLPALETKSVEQEVIQSQLSHCVNLYKSLS 1515



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>DMD_CANFA (O97592) Dystrophin|
          Length = 3680

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = -3

Query: 408  VSFDLLLCPSN-----EDILLIGVEIKLHVPIIIEPEVEYNYLCPVLSHIIELFKQLS 250
            + F L   P+N     ++  +I  E+K+H+P +    VE   +   L+H + L+K LS
Sbjct: 1458 MKFRLFQKPANFEQRLQESKMILDEVKMHLPALETKSVEQEVVQSQLNHCVNLYKSLS 1515



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>DMD_HUMAN (P11532) Dystrophin|
          Length = 3685

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = -3

Query: 408  VSFDLLLCPSN-----EDILLIGVEIKLHVPIIIEPEVEYNYLCPVLSHIIELFKQLS 250
            + F L   P+N     ++  +I  E+K+H+P +    VE   +   L+H + L+K LS
Sbjct: 1456 MKFRLFQKPANFEQRLQESKMILDEVKMHLPALETKSVEQEVVQSQLNHCVNLYKSLS 1513



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>PPCK_AZOSE (Q5P2P8) Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (PEP|
           carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 614

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
 Frame = +3

Query: 150 SYNFFVYSAVTS*SETLXF*FG-------DPFEMVPF 239
           ++NF VY A T  SET    FG       DPF M+PF
Sbjct: 442 NWNFGVYMAATLGSETTAAAFGAQGVVRRDPFAMLPF 478



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>KTR7_YEAST (P40504) Probable mannosyltransferase KTR7 (EC 2.4.1.131)|
          Length = 517

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
 Frame = +1

Query: 127 PTVDYHYDLTTSSYTQLLRHNQKLXSSNLAILLKWSP---FGSEAELLKQFDDMGEH-GT 294
           P VD+  D++   + ++ +HN+K   + L   L W+    F +    +K+   + E+ GT
Sbjct: 217 PDVDFFCDISYDPFFEMAKHNKKYGFTVLITELYWTVPNLFRTTKSFIKKTAGLKENLGT 276

Query: 295 --KIIVFNLWFNDDGDMEL 345
             K+  FN    D  D E+
Sbjct: 277 LWKLFTFNYNILDTDDEEI 295



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>DMD_PIG (Q5GN48) Dystrophin|
          Length = 3674

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = -3

Query: 408  VSFDLLLCPSN-----EDILLIGVEIKLHVPIIIEPEVEYNYLCPVLSHIIELFKQLS 250
            + F L   P+N     ++  +I  E+K+H+P +    VE   +   L+H + L+K LS
Sbjct: 1452 MKFRLFQKPANFEQRLQESKMILDEVKMHLPALEIKSVEQEVVQSQLNHCVNLYKSLS 1509



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>SENP3_HUMAN (Q9H4L4) Sentrin-specific protease 3 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP3) (SUMO-1-specific
           protease 3)
          Length = 574

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -2

Query: 205 KXRVSDYDVTAEYTKKL*DRNGSLLLAPIH---HRSLFPSEMCKKEDQYF 65
           K R   YD    +TK +   N  LLL PIH   H SL   ++ ++   YF
Sbjct: 432 KLRTKGYDGVKRWTKNVDIFNKELLLIPIHLEVHWSLISVDVRRRTITYF 481



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>YK54_YEAST (P36154) Hypothetical 18.4 kDa protein in SIS2-MTD1 intergenic|
           region
          Length = 155

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 286 HGTKIIVFNLWFNDDGDMELDFNSDKKDILITGAQKKVKTNKHXK 420
           HG+K +   + F+ D D  LD  +DKK +   G + + + +   K
Sbjct: 97  HGSKTVNLVINFDHDDDWTLDIENDKKKLFEYGIENETEISLFNK 141



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>SENP3_MOUSE (Q9EP97) Sentrin-specific protease 3 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP3) (SUMO-1-specific
           protease 3) (Smt3-specific isopeptidase 1) (Smt3ip1)
          Length = 568

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -2

Query: 205 KXRVSDYDVTAEYTKKL*DRNGSLLLAPIH---HRSLFPSEMCKKEDQYF 65
           K R   YD    +TK +   N  LLL PIH   H SL   ++ ++   YF
Sbjct: 426 KLRTKGYDGVKRWTKNVDIFNKELLLIPIHLEVHWSLISVDVRRRTITYF 475



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>PCXA_PSEPU (P00436) Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3)|
           (3,4-PCD)
          Length = 200

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 378 NEDILLIGVEIKLHVPIIIEPEVEYNYLCPVLSHIIELFKQLSFATKR 235
           N  +   G+ I LH  +  + E + N  CPVL+ I +  ++ +   KR
Sbjct: 127 NISLFARGINIHLHTRLYFDDEAQANAKCPVLNLIEQPQRRETLIAKR 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,146,042
Number of Sequences: 219361
Number of extensions: 1080882
Number of successful extensions: 2932
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2925
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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