| Clone Name | bags30l10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470960.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 954 Score = 735 bits (371), Expect = 0.0 Identities = 557/619 (89%) Strand = Plus / Plus Query: 27 ctccccccgccgtcgttcccgggaaggagttcacgcggacctgcaagggcctcgtcgtcg 86 |||| |||||||| |||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 68 ctcctcccgccgtggttcccggcaaggagttcacccgcacctgcaagggcctcgtcgtcg 127 Query: 87 tgctcatcggcggctacgtgctgctccagctcctcccatcctccctcaactacctcgcca 146 | ||| ||||||| || |||||||||||||||||||| ||||||||| |||||||||||| Sbjct: 128 tcctcgtcggcggatatgtgctgctccagctcctcccctcctccctcgactacctcgcca 187 Query: 147 tcatccccgccaagacaattccctttgtatggaccgtcttcacagccggttacatcgagc 206 |||||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||| | Sbjct: 188 tcatccccgccaagactattccatttgtatggactgtcttcacagctggctacatcgaac 247 Query: 207 aagtccttccaggggctattggcagttcccttggtctgctcttctgtgggaaggatatcg 266 |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 248 aagttcttccaggggctatcggcagttcccttggtcttctcttctgtgggaaggatatcg 307 Query: 267 agccagtctggggccgcaaggagttcttgaagttcattatcttgatcaactccatctgcg 326 | ||||| ||||||||||| || ||||||||||| || |||||| ||||||||||||||| Sbjct: 308 aaccagtgtggggccgcaaagaattcttgaagtttatcatcttggtcaactccatctgcg 367 Query: 327 gtgtccttgccttctgcattgccgttgcactgtactatgtcaccgggaaagagagcttcc 386 |||||||||| |||||| |||| |||||||| ||||||||||| || || |||||||||| Sbjct: 368 gtgtccttgcattctgctttgctgttgcactctactatgtcactggaaaggagagcttcc 427 Query: 387 ttgtgacgccactttctggcttccatggcgctcttgctggttttctggttggcctgaagc 446 |||| || ||||||||||| |||||||| || |||||||| ||||| ||||||||||| | Sbjct: 428 ttgttacaccactttctggtttccatggtgcccttgctggctttcttgttggcctgaaac 487 Query: 447 agctcttgccaaaccttgagctccccatgtgctttttctggaaaattaaggctaagtgga 506 | || || |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 488 aacttttaccaaaccttgagctccccatgtgctttttctggaaaataaaggctaagtgga 547 Query: 507 tgccattctttgtcatgtgcttctcaactatcatggccttcatcgtgccggattccatca 566 |||||||||| || | |||||||||||||||||||||||||| || || |||||||| | Sbjct: 548 tgccattcttcgtgctatgcttctcaactatcatggccttcattgtacctgattccatta 607 Query: 567 acttcctgccgactttgttgtctgggatgtacgtcagctggctttacctgagatacttcc 626 ||||||| || ||| || | || |||||||| ||||||||| |||||||||||||||||| Sbjct: 608 acttccttccaactctgctatcggggatgtatgtcagctggatttacctgagatacttcc 667 Query: 627 agaggaacccactgacagg 645 ||||||||||||||||||| Sbjct: 668 agaggaacccactgacagg 686
>dbj|AK073274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029B20, full insert sequence Length = 1504 Score = 735 bits (371), Expect = 0.0 Identities = 557/619 (89%) Strand = Plus / Plus Query: 27 ctccccccgccgtcgttcccgggaaggagttcacgcggacctgcaagggcctcgtcgtcg 86 |||| |||||||| |||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 342 ctcctcccgccgtggttcccggcaaggagttcacccgcacctgcaagggcctcgtcgtcg 401 Query: 87 tgctcatcggcggctacgtgctgctccagctcctcccatcctccctcaactacctcgcca 146 | ||| ||||||| || |||||||||||||||||||| ||||||||| |||||||||||| Sbjct: 402 tcctcgtcggcggatatgtgctgctccagctcctcccctcctccctcgactacctcgcca 461 Query: 147 tcatccccgccaagacaattccctttgtatggaccgtcttcacagccggttacatcgagc 206 |||||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||| | Sbjct: 462 tcatccccgccaagactattccatttgtatggactgtcttcacagctggctacatcgaac 521 Query: 207 aagtccttccaggggctattggcagttcccttggtctgctcttctgtgggaaggatatcg 266 |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 522 aagttcttccaggggctatcggcagttcccttggtcttctcttctgtgggaaggatatcg 581 Query: 267 agccagtctggggccgcaaggagttcttgaagttcattatcttgatcaactccatctgcg 326 | ||||| ||||||||||| || ||||||||||| || |||||| ||||||||||||||| Sbjct: 582 aaccagtgtggggccgcaaagaattcttgaagtttatcatcttggtcaactccatctgcg 641 Query: 327 gtgtccttgccttctgcattgccgttgcactgtactatgtcaccgggaaagagagcttcc 386 |||||||||| |||||| |||| |||||||| ||||||||||| || || |||||||||| Sbjct: 642 gtgtccttgcattctgctttgctgttgcactctactatgtcactggaaaggagagcttcc 701 Query: 387 ttgtgacgccactttctggcttccatggcgctcttgctggttttctggttggcctgaagc 446 |||| || ||||||||||| |||||||| || |||||||| ||||| ||||||||||| | Sbjct: 702 ttgttacaccactttctggtttccatggtgcccttgctggctttcttgttggcctgaaac 761 Query: 447 agctcttgccaaaccttgagctccccatgtgctttttctggaaaattaaggctaagtgga 506 | || || |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 762 aacttttaccaaaccttgagctccccatgtgctttttctggaaaataaaggctaagtgga 821 Query: 507 tgccattctttgtcatgtgcttctcaactatcatggccttcatcgtgccggattccatca 566 |||||||||| || | |||||||||||||||||||||||||| || || |||||||| | Sbjct: 822 tgccattcttcgtgctatgcttctcaactatcatggccttcattgtacctgattccatta 881 Query: 567 acttcctgccgactttgttgtctgggatgtacgtcagctggctttacctgagatacttcc 626 ||||||| || ||| || | || |||||||| ||||||||| |||||||||||||||||| Sbjct: 882 acttccttccaactctgctatcggggatgtatgtcagctggatttacctgagatacttcc 941 Query: 627 agaggaacccactgacagg 645 ||||||||||||||||||| Sbjct: 942 agaggaacccactgacagg 960
>dbj|AK066103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051M22, full insert sequence Length = 1159 Score = 735 bits (371), Expect = 0.0 Identities = 557/619 (89%) Strand = Plus / Plus Query: 27 ctccccccgccgtcgttcccgggaaggagttcacgcggacctgcaagggcctcgtcgtcg 86 |||| |||||||| |||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 158 ctcctcccgccgtggttcccggcaaggagttcacccgcacctgcaagggcctcgtcgtcg 217 Query: 87 tgctcatcggcggctacgtgctgctccagctcctcccatcctccctcaactacctcgcca 146 | ||| ||||||| || |||||||||||||||||||| ||||||||| |||||||||||| Sbjct: 218 tcctcgtcggcggatatgtgctgctccagctcctcccctcctccctcgactacctcgcca 277 Query: 147 tcatccccgccaagacaattccctttgtatggaccgtcttcacagccggttacatcgagc 206 |||||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||| | Sbjct: 278 tcatccccgccaagactattccatttgtatggactgtcttcacagctggctacatcgaac 337 Query: 207 aagtccttccaggggctattggcagttcccttggtctgctcttctgtgggaaggatatcg 266 |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 338 aagttcttccaggggctatcggcagttcccttggtcttctcttctgtgggaaggatatcg 397 Query: 267 agccagtctggggccgcaaggagttcttgaagttcattatcttgatcaactccatctgcg 326 | ||||| ||||||||||| || ||||||||||| || |||||| ||||||||||||||| Sbjct: 398 aaccagtgtggggccgcaaagaattcttgaagtttatcatcttggtcaactccatctgcg 457 Query: 327 gtgtccttgccttctgcattgccgttgcactgtactatgtcaccgggaaagagagcttcc 386 |||||||||| |||||| |||| |||||||| ||||||||||| || || |||||||||| Sbjct: 458 gtgtccttgcattctgctttgctgttgcactctactatgtcactggaaaggagagcttcc 517 Query: 387 ttgtgacgccactttctggcttccatggcgctcttgctggttttctggttggcctgaagc 446 |||| || ||||||||||| |||||||| || |||||||| ||||| ||||||||||| | Sbjct: 518 ttgttacaccactttctggtttccatggtgcccttgctggctttcttgttggcctgaaac 577 Query: 447 agctcttgccaaaccttgagctccccatgtgctttttctggaaaattaaggctaagtgga 506 | || || |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 578 aacttttaccaaaccttgagctccccatgtgctttttctggaaaataaaggctaagtgga 637 Query: 507 tgccattctttgtcatgtgcttctcaactatcatggccttcatcgtgccggattccatca 566 |||||||||| || | |||||||||||||||||||||||||| || || |||||||| | Sbjct: 638 tgccattcttcgtgctatgcttctcaactatcatggccttcattgtacctgattccatta 697 Query: 567 acttcctgccgactttgttgtctgggatgtacgtcagctggctttacctgagatacttcc 626 ||||||| || ||| || | || |||||||| ||||||||| |||||||||||||||||| Sbjct: 698 acttccttccaactctgctatcggggatgtatgtcagctggatttacctgagatacttcc 757 Query: 627 agaggaacccactgacagg 645 ||||||||||||||||||| Sbjct: 758 agaggaacccactgacagg 776
>dbj|AK061755.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A02, full insert sequence Length = 1250 Score = 735 bits (371), Expect = 0.0 Identities = 557/619 (89%) Strand = Plus / Plus Query: 27 ctccccccgccgtcgttcccgggaaggagttcacgcggacctgcaagggcctcgtcgtcg 86 |||| |||||||| |||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 98 ctcctcccgccgtggttcccggcaaggagttcacccgcacctgcaagggcctcgtcgtcg 157 Query: 87 tgctcatcggcggctacgtgctgctccagctcctcccatcctccctcaactacctcgcca 146 | ||| ||||||| || |||||||||||||||||||| ||||||||| |||||||||||| Sbjct: 158 tcctcgtcggcggatatgtgctgctccagctcctcccctcctccctcgactacctcgcca 217 Query: 147 tcatccccgccaagacaattccctttgtatggaccgtcttcacagccggttacatcgagc 206 |||||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||| | Sbjct: 218 tcatccccgccaagactattccatttgtatggactgtcttcacagctggctacatcgaac 277 Query: 207 aagtccttccaggggctattggcagttcccttggtctgctcttctgtgggaaggatatcg 266 |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 278 aagttcttccaggggctatcggcagttcccttggtcttctcttctgtgggaaggatatcg 337 Query: 267 agccagtctggggccgcaaggagttcttgaagttcattatcttgatcaactccatctgcg 326 | ||||| ||||||||||| || ||||||||||| || |||||| ||||||||||||||| Sbjct: 338 aaccagtgtggggccgcaaagaattcttgaagtttatcatcttggtcaactccatctgcg 397 Query: 327 gtgtccttgccttctgcattgccgttgcactgtactatgtcaccgggaaagagagcttcc 386 |||||||||| |||||| |||| |||||||| ||||||||||| || || |||||||||| Sbjct: 398 gtgtccttgcattctgctttgctgttgcactctactatgtcactggaaaggagagcttcc 457 Query: 387 ttgtgacgccactttctggcttccatggcgctcttgctggttttctggttggcctgaagc 446 |||| || ||||||||||| |||||||| || |||||||| ||||| ||||||||||| | Sbjct: 458 ttgttacaccactttctggtttccatggtgcccttgctggctttcttgttggcctgaaac 517 Query: 447 agctcttgccaaaccttgagctccccatgtgctttttctggaaaattaaggctaagtgga 506 | || || |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 518 aacttttaccaaaccttgagctccccatgtgctttttctggaaaataaaggctaagtgga 577 Query: 507 tgccattctttgtcatgtgcttctcaactatcatggccttcatcgtgccggattccatca 566 |||||||||| || | |||||||||||||||||||||||||| || || |||||||| | Sbjct: 578 tgccattcttcgtgctatgcttctcaactatcatggccttcattgtacctgattccatta 637 Query: 567 acttcctgccgactttgttgtctgggatgtacgtcagctggctttacctgagatacttcc 626 ||||||| || ||| || | || |||||||| ||||||||| |||||||||||||||||| Sbjct: 638 acttccttccaactctgctatcggggatgtatgtcagctggatttacctgagatacttcc 697 Query: 627 agaggaacccactgacagg 645 ||||||||||||||||||| Sbjct: 698 agaggaacccactgacagg 716
>gb|AY596542.1| Saccharum officinarum clone SCCCLB1002C01, complete sequence Length = 1581 Score = 638 bits (322), Expect = e-180 Identities = 535/606 (88%) Strand = Plus / Minus Query: 44 cccgggaaggagttcacgcggacctgcaagggcctcgtcgtcgtgctcatcggcggctac 103 ||||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||| Sbjct: 1271 cccggcaaggagttcacgcgcacctgcaagggcctcgtcgtcgtgctcatcggaggatac 1212 Query: 104 gtgctgctccagctcctcccatcctccctcaactacctcgccatcatccccgccaagaca 163 |||||||||||||||||||| || || |||||||||||||| ||||||||| |||||||| Sbjct: 1211 gtgctgctccagctcctcccctcgtcactcaactacctcgctatcatcccctccaagaca 1152 Query: 164 attccctttgtatggaccgtcttcacagccggttacatcgagcaagtccttccaggggct 223 || |||| |||||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct: 1151 atcccctatgtatggaccgtcttcaccgctggttacatcgagcaagtcctcccaggggcc 1092 Query: 224 attggcagttcccttggtctgctcttctgtgggaaggatatcgagccagtctggggccgc 283 ||||||||||| |||||||| ||||| ||||| ||||| || || |||| ||||||||| Sbjct: 1091 attggcagttctcttggtcttctcttttgtggaaaggacattgaaccagcatggggccgc 1032 Query: 284 aaggagttcttgaagttcattatcttgatcaactccatctgcggtgtccttgccttctgc 343 ||||| ||||||||||||||||| ||||||||||||||||| || | ||||| |||||| Sbjct: 1031 aaggaattcttgaagttcattattttgatcaactccatctgtggcattcttgctttctgc 972 Query: 344 attgccgttgcactgtactatgtcaccgggaaagagagcttccttgtgacgccactttct 403 |||| ||| ||| ||||| |||||||| || ||||||||||| || || ||||||||| Sbjct: 971 tttgctattggactctactacgtcaccggaaaggagagcttcctggtcacaccactttct 912 Query: 404 ggcttccatggcgctcttgctggttttctggttggcctgaagcagctcttgccaaacctt 463 || |||||||| ||||||||| || || || | ||||||||||||||| ||||||||| Sbjct: 911 ggtttccatggttgtcttgctggcttccttgtggccctgaagcagctcttaccaaacctt 852 Query: 464 gagctccccatgtgctttttctggaaaattaaggctaagtggatgccattctttgtcatg 523 ||||| || |||||||||||||||||||| ||||| |||||||||||||||||||| | Sbjct: 851 gagcttcctatgtgctttttctggaaaataaaggcaaagtggatgccattctttgttgta 792 Query: 524 tgcttctcaactatcatggccttcatcgtgccggattccatcaacttcctgccgactttg 583 || ||||||| ||||||||||||||| ||||| |||||||| ||||||||||| |||||| Sbjct: 791 tgtttctcaagtatcatggccttcattgtgcctgattccattaacttcctgccaactttg 732 Query: 584 ttgtctgggatgtacgtcagctggctttacctgagatacttccagaggaacccactgaca 643 |||| |||||||| || |||||||||||||||||||||||||| |||||||||||||| Sbjct: 731 gtgtccgggatgtatgttagctggctttacctgagatacttccaaaggaacccactgact 672 Query: 644 ggactt 649 |||||| Sbjct: 671 ggactt 666
>gb|AY104243.1| Zea mays PCO073150 mRNA sequence Length = 1638 Score = 622 bits (314), Expect = e-175 Identities = 533/606 (87%) Strand = Plus / Plus Query: 44 cccgggaaggagttcacgcggacctgcaagggcctcgtcgtcgtgctcatcggcggctac 103 ||||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||| Sbjct: 351 cccggcaaggagttcacgcgcacctgcaagggcctcgtcgtcgtgctcatcggaggatac 410 Query: 104 gtgctgctccagctcctcccatcctccctcaactacctcgccatcatccccgccaagaca 163 |||||||||||||||||||| || || |||||||||||||||||||||||| |||||||| Sbjct: 411 gtgctgctccagctcctcccttcgtcactcaactacctcgccatcatcccctccaagaca 470 Query: 164 attccctttgtatggaccgtcttcacagccggttacatcgagcaagtccttccaggggct 223 || |||| ||||||||||||||| || || |||||||||||||||||||| |||||||| Sbjct: 471 atcccctatgtatggaccgtctttaccgctggttacatcgagcaagtcctcccaggggcc 530 Query: 224 attggcagttcccttggtctgctcttctgtgggaaggatatcgagccagtctggggccgc 283 ||||||||||| |||||||| ||||| ||||| ||||| || || |||| ||||||||| Sbjct: 531 attggcagttctcttggtcttctcttttgtggaaaggacattgaaccagcatggggccgc 590 Query: 284 aaggagttcttgaagttcattatcttgatcaactccatctgcggtgtccttgccttctgc 343 ||||| ||||||||||||||||| ||||||||||||||||| || | ||||| || ||| Sbjct: 591 aaggaattcttgaagttcattattttgatcaactccatctgtggcattcttgcattttgc 650 Query: 344 attgccgttgcactgtactatgtcaccgggaaagagagcttccttgtgacgccactttct 403 |||| ||| ||| ||||| ||||| || || |||||||||||||| || ||||||||| Sbjct: 651 tttgctattggactctactacgtcactggaaaggagagcttccttgtcacaccactttct 710 Query: 404 ggcttccatggcgctcttgctggttttctggttggcctgaagcagctcttgccaaacctt 463 || ||||| || |||||||| ||||| || | ||||||||| ||||| ||||||||| Sbjct: 711 ggtttccacggttgccttgctggctttcttgtggccctgaagcaactcttaccaaacctt 770 Query: 464 gagctccccatgtgctttttctggaaaattaaggctaagtggatgccattctttgtcatg 523 ||||| || |||||||||||||||||||| ||||| |||||||||||||||||||| | Sbjct: 771 gagcttcctatgtgctttttctggaaaataaaggcaaagtggatgccattctttgttgta 830 Query: 524 tgcttctcaactatcatggccttcatcgtgccggattccatcaacttcctgccgactttg 583 || ||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 831 tgtttctcaagtatcatggccttcatcgtgcctgattccattaacttcctgccaactttg 890 Query: 584 ttgtctgggatgtacgtcagctggctttacctgagatacttccagaggaacccactgaca 643 |||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| Sbjct: 891 gtgtccgggatgtacgttagctggctttacctgaggtacttccaaaggaacccactgact 950 Query: 644 ggactt 649 |||||| Sbjct: 951 ggactt 956
>gb|BT017350.1| Zea mays clone EL01N0323G09.c mRNA sequence Length = 1164 Score = 408 bits (206), Expect = e-111 Identities = 392/454 (86%) Strand = Plus / Minus Query: 196 ttacatcgagcaagtccttccaggggctattggcagttcccttggtctgctcttctgtgg 255 |||||||||||||||||| |||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 1109 ttacatcgagcaagtcctcccaggggccattggcagttctcttggtcttctcttttgtgg 1050 Query: 256 gaaggatatcgagccagtctggggccgcaaggagttcttgaagttcattatcttgatcaa 315 ||||| || || |||| |||||||||||||| ||||||||||||||||| |||||||| Sbjct: 1049 aaaggacattgaaccagcatggggccgcaaggaattcttgaagttcattattttgatcaa 990 Query: 316 ctccatctgcggtgtccttgccttctgcattgccgttgcactgtactatgtcaccgggaa 375 |||| |||| || | ||||| || ||| |||| ||| ||| ||||| || || || || Sbjct: 989 ctccgtctgtggcattcttgcattttgctttgctattggactctactacgtgactggaaa 930 Query: 376 agagagcttccttgtgacgccactttctggcttccatggcgctcttgctggttttctggt 435 |||||||||||||| || ||||||||||| ||||| || |||||||| ||||| || Sbjct: 929 ggagagcttccttgtcacaccactttctggtttccacggttgccttgctggctttcttgt 870 Query: 436 tggcctgaagcagctcttgccaaaccttgagctccccatgtgctttttctggaaaattaa 495 || | ||||||||||||| |||||||||||||| || ||||| |||||||||||||| || Sbjct: 869 tgccttgaagcagctcttaccaaaccttgagcttcctatgtgttttttctggaaaataaa 810 Query: 496 ggctaagtggatgccattctttgtcatgtgcttctcaactatcatggccttcatcgtgcc 555 ||| |||||||||||||||||||| | || ||||||| ||||||||||||||||||||| Sbjct: 809 ggcaaagtggatgccattctttgttgtatgtttctcaagtatcatggccttcatcgtgcc 750 Query: 556 ggattccatcaacttcctgccgactttgttgtctgggatgtacgtcagctggctttacct 615 |||||||| ||||||||||| |||||| |||| ||||||||||| |||||||||||| | Sbjct: 749 tgattccattaacttcctgccaactttggtgtccgggatgtacgttagctggctttactt 690 Query: 616 gagatacttccagaggaacccactgacaggactt 649 |||||||||||| |||||||||||||| |||||| Sbjct: 689 gagatacttccaaaggaacccactgactggactt 656
>emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0094O15, complete sequence Length = 144778 Score = 206 bits (104), Expect = 7e-50 Identities = 152/168 (90%) Strand = Plus / Minus Query: 220 ggctattggcagttcccttggtctgctcttctgtgggaaggatatcgagccagtctgggg 279 |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct: 15025 ggctatcggcagttcccttggtcttctcttctgtgggaaggatatcgaaccagtgtgggg 14966 Query: 280 ccgcaaggagttcttgaagttcattatcttgatcaactccatctgcggtgtccttgcctt 339 |||||| || ||||||||||| || |||||| ||||||||||||||||||||||||| || Sbjct: 14965 ccgcaaagaattcttgaagtttatcatcttggtcaactccatctgcggtgtccttgcatt 14906 Query: 340 ctgcattgccgttgcactgtactatgtcaccgggaaagagagcttcct 387 |||| |||| |||||||| ||||||||||| || || ||||||||||| Sbjct: 14905 ctgctttgctgttgcactctactatgtcactggaaaggagagcttcct 14858 Score = 167 bits (84), Expect = 6e-38 Identities = 111/120 (92%) Strand = Plus / Minus Query: 41 gttcccgggaaggagttcacgcggacctgcaagggcctcgtcgtcgtgctcatcggcggc 100 |||||||| ||||||||||| || ||||||||||||||||||||||| ||| ||||||| Sbjct: 15810 gttcccggcaaggagttcacccgcacctgcaagggcctcgtcgtcgtcctcgtcggcgga 15751 Query: 101 tacgtgctgctccagctcctcccatcctccctcaactacctcgccatcatccccgccaag 160 || |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct: 15750 tatgtgctgctccagctcctcccctcctccctcgactacctcgccatcatccccgccaag 15691 Score = 161 bits (81), Expect = 4e-36 Identities = 129/145 (88%) Strand = Plus / Minus Query: 501 agtggatgccattctttgtcatgtgcttctcaactatcatggccttcatcgtgccggatt 560 |||||||||||||||| || | |||||||||||||||||||||||||| || || |||| Sbjct: 14250 agtggatgccattcttcgtgctatgcttctcaactatcatggccttcattgtacctgatt 14191 Query: 561 ccatcaacttcctgccgactttgttgtctgggatgtacgtcagctggctttacctgagat 620 |||| |||||||| || ||| || | || |||||||| ||||||||| |||||||||||| Sbjct: 14190 ccattaacttccttccaactctgctatcggggatgtatgtcagctggatttacctgagat 14131 Query: 621 acttccagaggaacccactgacagg 645 ||||||||||||||||||||||||| Sbjct: 14130 acttccagaggaacccactgacagg 14106 Score = 135 bits (68), Expect = 2e-28 Identities = 98/108 (90%) Strand = Plus / Minus Query: 395 ccactttctggcttccatggcgctcttgctggttttctggttggcctgaagcagctcttg 454 ||||||||||| |||||||| || |||||||| ||||| ||||||||||| || || || Sbjct: 14467 ccactttctggtttccatggtgcccttgctggctttcttgttggcctgaaacaactttta 14408 Query: 455 ccaaaccttgagctccccatgtgctttttctggaaaattaaggctaag 502 |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 14407 ccaaaccttgagctccccatgtgctttttctggaaaataaaggctaag 14360 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 164 attccctttgtatggaccgtcttcacagccggttacatcgagcaagtccttccagggg 221 ||||| ||||||||||| ||||||||||| || |||||||| ||||| |||||||||| Sbjct: 15381 attccatttgtatggactgtcttcacagctggctacatcgaacaagttcttccagggg 15324
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 206 bits (104), Expect = 7e-50 Identities = 152/168 (90%) Strand = Plus / Minus Query: 220 ggctattggcagttcccttggtctgctcttctgtgggaaggatatcgagccagtctgggg 279 |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct: 219205 ggctatcggcagttcccttggtcttctcttctgtgggaaggatatcgaaccagtgtgggg 219146 Query: 280 ccgcaaggagttcttgaagttcattatcttgatcaactccatctgcggtgtccttgcctt 339 |||||| || ||||||||||| || |||||| ||||||||||||||||||||||||| || Sbjct: 219145 ccgcaaagaattcttgaagtttatcatcttggtcaactccatctgcggtgtccttgcatt 219086 Query: 340 ctgcattgccgttgcactgtactatgtcaccgggaaagagagcttcct 387 |||| |||| |||||||| ||||||||||| || || ||||||||||| Sbjct: 219085 ctgctttgctgttgcactctactatgtcactggaaaggagagcttcct 219038 Score = 167 bits (84), Expect = 6e-38 Identities = 111/120 (92%) Strand = Plus / Minus Query: 41 gttcccgggaaggagttcacgcggacctgcaagggcctcgtcgtcgtgctcatcggcggc 100 |||||||| ||||||||||| || ||||||||||||||||||||||| ||| ||||||| Sbjct: 219990 gttcccggcaaggagttcacccgcacctgcaagggcctcgtcgtcgtcctcgtcggcgga 219931 Query: 101 tacgtgctgctccagctcctcccatcctccctcaactacctcgccatcatccccgccaag 160 || |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct: 219930 tatgtgctgctccagctcctcccctcctccctcgactacctcgccatcatccccgccaag 219871 Score = 161 bits (81), Expect = 4e-36 Identities = 129/145 (88%) Strand = Plus / Minus Query: 501 agtggatgccattctttgtcatgtgcttctcaactatcatggccttcatcgtgccggatt 560 |||||||||||||||| || | |||||||||||||||||||||||||| || || |||| Sbjct: 218430 agtggatgccattcttcgtgctatgcttctcaactatcatggccttcattgtacctgatt 218371 Query: 561 ccatcaacttcctgccgactttgttgtctgggatgtacgtcagctggctttacctgagat 620 |||| |||||||| || ||| || | || |||||||| ||||||||| |||||||||||| Sbjct: 218370 ccattaacttccttccaactctgctatcggggatgtatgtcagctggatttacctgagat 218311 Query: 621 acttccagaggaacccactgacagg 645 ||||||||||||||||||||||||| Sbjct: 218310 acttccagaggaacccactgacagg 218286 Score = 135 bits (68), Expect = 2e-28 Identities = 98/108 (90%) Strand = Plus / Minus Query: 395 ccactttctggcttccatggcgctcttgctggttttctggttggcctgaagcagctcttg 454 ||||||||||| |||||||| || |||||||| ||||| ||||||||||| || || || Sbjct: 218647 ccactttctggtttccatggtgcccttgctggctttcttgttggcctgaaacaactttta 218588 Query: 455 ccaaaccttgagctccccatgtgctttttctggaaaattaaggctaag 502 |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 218587 ccaaaccttgagctccccatgtgctttttctggaaaataaaggctaag 218540 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 164 attccctttgtatggaccgtcttcacagccggttacatcgagcaagtccttccagggg 221 ||||| ||||||||||| ||||||||||| || |||||||| ||||| |||||||||| Sbjct: 219561 attccatttgtatggactgtcttcacagctggctacatcgaacaagttcttccagggg 219504
>gb|AY024260.1| Oryza sativa microsatellite MRG6585 containing (TCTT)X6, genomic sequence Length = 224 Score = 143 bits (72), Expect = 8e-31 Identities = 90/96 (93%) Strand = Plus / Plus Query: 65 acctgcaagggcctcgtcgtcgtgctcatcggcggctacgtgctgctccagctcctccca 124 ||||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||| Sbjct: 3 acctgcaagggcctcgtcgtcgtcctcgtcggcggatatgtgctgctccagctcctcccc 62 Query: 125 tcctccctcaactacctcgccatcatccccgccaag 160 ||||||||| |||||||||||||||||||||||||| Sbjct: 63 tcctccctcgactacctcgccatcatccccgccaag 98
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 agggcctcgtcgtcgtgctca 92 ||||||||||||||||||||| Sbjct: 449644 agggcctcgtcgtcgtgctca 449624
>gb|AC078899.1|AC078899 Homo sapiens chromosome 19, BAC BC371065 (CTC-575C13), complete sequence Length = 197912 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 479 tttttctggaaaattaaggct 499 ||||||||||||||||||||| Sbjct: 114590 tttttctggaaaattaaggct 114610
>emb|AJ007730.1|YLI007730 Yarrowia lipolytica Micelial Growth Factor-1, YlMGF1 Length = 4350 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 514 ctttgtcatgtgcttctcaac 534 ||||||||||||||||||||| Sbjct: 59 ctttgtcatgtgcttctcaac 79
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 514 ctttgtcatgtgcttctcaac 534 ||||||||||||||||||||| Sbjct: 191365 ctttgtcatgtgcttctcaac 191345
>gb|AC160972.4| Mus musculus BAC clone RP24-571D21 from chromosome 12, complete sequence Length = 184921 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 gctcttgctggttttctggt 435 |||||||||||||||||||| Sbjct: 108198 gctcttgctggttttctggt 108179
>ref|XM_515237.1| PREDICTED: Pan troglodytes similar to phosphatidylinositol 4-kinase, catalytic, alpha polypeptide isoform 2; phosphatidylinositol 4-kinase, type II, alpha; phosphatidylinositol 4-kinase, type III, alpha; phosphatidylinositol 4-kinase 230 (LOC458956), mRNA Length = 1635 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 cgtgctgctccagctcctcc 122 |||||||||||||||||||| Sbjct: 928 cgtgctgctccagctcctcc 909
>gb|AC109501.21| Mus musculus chromosome 17, clone RP23-449E17, complete sequence Length = 187144 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 ctccagctcctcccatcctc 129 |||||||||||||||||||| Sbjct: 42546 ctccagctcctcccatcctc 42565
>gb|AC159030.2| Pan troglodytes BAC clone CH251-399F13 from chromosome unknown, complete sequence Length = 176914 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 ccttggtctgctcttctgtg 254 |||||||||||||||||||| Sbjct: 174855 ccttggtctgctcttctgtg 174874
>tpg|BK000031.1| TPA: TPA_exp: Streptococcus mutans UA159 tRNA methyltransferase (mtfA), thioredoxin reductase (trdA), FruR (fruR), FPK (fruK), and inducible fructose permease (fruI) genes, complete cds Length = 6440 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 ttctggcttccatggcgctcttgc 423 ||||||||||| |||||||||||| Sbjct: 5511 ttctggcttccttggcgctcttgc 5534
>ref|XM_803103.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510075.50) partial mRNA Length = 4719 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 ttcctgccgactttgttgtc 588 |||||||||||||||||||| Sbjct: 2905 ttcctgccgactttgttgtc 2886
>gb|AF113637.1| Phrynops nasuta 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 503 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 gaaaattaaggctaagtgga 506 |||||||||||||||||||| Sbjct: 282 gaaaattaaggctaagtgga 263
>gb|AC161761.3| Mus musculus BAC clone RP23-379E17 from chromosome 3, complete sequence Length = 205852 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 420 ttgctggttttctggttggcctga 443 |||||||||||||||||| ||||| Sbjct: 75073 ttgctggttttctggttgacctga 75096
>emb|AL596254.2| Human DNA sequence from clone RP11-252L24 on chromosome 1 Contains part of the PLAC3 gene for placenta-specific 3 (PLAC3), complete sequence Length = 72207 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 tcctcccatcctccctcaac 136 |||||||||||||||||||| Sbjct: 48522 tcctcccatcctccctcaac 48503
>emb|AL359454.7| Human DNA sequence from clone RP11-97E23 on chromosome 13 Contains a novel gene (HSPC014), a novel gene (FKSG16) and a cytochrome P450, 51 (lanosterol 14-alpha-demethylase) (CYP51) pseudogene, complete sequence Length = 101830 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 521 atgtgcttctcaactatcatggcc 544 ||||||||||||||||||| |||| Sbjct: 6507 atgtgcttctcaactatcacggcc 6484
>emb|AL139411.11| Human DNA sequence from clone RP11-222A5 on chromosome 1q23.1-25.3 Contains a novel gene, complete sequence Length = 116304 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 ggcctgaagcagctcttgcc 456 |||||||||||||||||||| Sbjct: 12878 ggcctgaagcagctcttgcc 12859
>emb|AL031656.10|HS232N11 Human DNA sequence from clone RP1-232N11 on chromosome 20q12-13.2 Contains part of the PTPRT gene for protein tyrosine phosphatase receptor type T and a novel gene, complete sequence Length = 111641 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 cattctttgtcatgtgcttc 529 |||||||||||||||||||| Sbjct: 88841 cattctttgtcatgtgcttc 88822
>emb|AL035468.3|HS424E5 Human DNA sequence from clone RP3-424E5 on chromosome 6q13-14.3, complete sequence Length = 93805 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 agttcttgaagttcattatcttga 311 ||||||||||||| |||||||||| Sbjct: 21553 agttcttgaagttaattatcttga 21576
>ref|XM_775346.1| PREDICTED: Strongylocentrotus purpuratus similar to solute carrier family 5 (sodium/glucose cotransporter), member 9 (LOC574938), mRNA Length = 1962 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgtcgtcgtgctcatcggcg 98 |||||||||||||||||||| Sbjct: 582 cgtcgtcgtgctcatcggcg 601
>gb|AF395874.1| Streptococcus mutans thioredoxin reductase (trxB) gene, partial cds; constitutive fructose-PTS operon, complete sequence; and homocysteine methyltransferase (metE) gene, partial cds Length = 5009 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 ttctggcttccatggcgctcttgc 423 ||||||||||| |||||||||||| Sbjct: 3774 ttctggcttccttggcgctcttgc 3797
>gb|AC025835.7| Homo sapiens chromosome 18, clone RP11-185H18, complete sequence Length = 146399 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cagttcccttggtctgctct 248 |||||||||||||||||||| Sbjct: 138826 cagttcccttggtctgctct 138807
>gb|AC092706.3| Homo sapiens chromosome 18, clone RP11-658P14, complete sequence Length = 178059 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cagttcccttggtctgctct 248 |||||||||||||||||||| Sbjct: 57034 cagttcccttggtctgctct 57015
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tatcttgatcaactccatct 323 |||||||||||||||||||| Sbjct: 18767395 tatcttgatcaactccatct 18767376 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tatcttgatcaactccatct 323 |||||||||||||||||||| Sbjct: 2764615 tatcttgatcaactccatct 2764596
>gb|DQ021453.1| Chlamydomonas reinhardtii transmembrane copper transporter precursor CTR1 (CTR1) mRNA, complete cds Length = 2955 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tcatcggcggctacgtgctg 109 |||||||||||||||||||| Sbjct: 1784 tcatcggcggctacgtgctg 1803
>gb|AC090386.13| Homo sapiens chromosome 18, clone RP11-797E24, complete sequence Length = 185563 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 gttggcctgaagcagctctt 453 |||||||||||||||||||| Sbjct: 136793 gttggcctgaagcagctctt 136812
>ref|XM_577560.1| PREDICTED: Rattus norvegicus similar to serine/threonine kinase (LOC502118), mRNA Length = 2160 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 tgctgctccagctcctccca 124 |||||||||||||||||||| Sbjct: 1832 tgctgctccagctcctccca 1851
>gb|AE014133.1| Streptococcus mutans UA159, complete genome Length = 2030921 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 ttctggcttccatggcgctcttgc 423 ||||||||||| |||||||||||| Sbjct: 820631 ttctggcttccttggcgctcttgc 820654
>gb|AC154823.2| Mus musculus BAC clone RP24-538J1 from 17, complete sequence Length = 187746 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 ctccagctcctcccatcctc 129 |||||||||||||||||||| Sbjct: 99112 ctccagctcctcccatcctc 99131
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tatcttgatcaactccatct 323 |||||||||||||||||||| Sbjct: 18693622 tatcttgatcaactccatct 18693603 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tatcttgatcaactccatct 323 |||||||||||||||||||| Sbjct: 2764559 tatcttgatcaactccatct 2764540
>emb|AL954153.6|CNS08CCR Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0060B11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109192 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 tatcttgatcaactccatct 323 |||||||||||||||||||| Sbjct: 52207 tatcttgatcaactccatct 52226
>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145539 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 tatcttgatcaactccatct 323 |||||||||||||||||||| Sbjct: 105832 tatcttgatcaactccatct 105851
>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151878 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tatcttgatcaactccatct 323 |||||||||||||||||||| Sbjct: 133540 tatcttgatcaactccatct 133521
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 404 ggcttccatggcgctcttgctggt 427 ||||| |||||||||||||||||| Sbjct: 124672 ggctttcatggcgctcttgctggt 124649 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,184,834 Number of Sequences: 3902068 Number of extensions: 5184834 Number of successful extensions: 113950 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113647 Number of HSP's gapped (non-prelim): 300 length of query: 649 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 626 effective length of database: 17,143,297,704 effective search space: 10731704362704 effective search space used: 10731704362704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)