ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags31a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_549834.1| Oryza sativa (japonica cultivar-group), mRNA 559 e-156
2dbj|AK100613.1| Oryza sativa (japonica cultivar-group) cDNA clon... 559 e-156
3dbj|AK058683.1| Oryza sativa (japonica cultivar-group) cDNA clon... 559 e-156
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 402 e-109
5dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic D... 402 e-109
6dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic D... 402 e-109
7gb|AC133171.5| Mus musculus BAC clone RP24-271D14 from chromosom... 44 0.50
8emb|BX544872.8| Zebrafish DNA sequence from clone DKEY-58L12 in ... 44 0.50
9gb|AC150274.2| Mus musculus BAC clone RP23-348G11 from 18, compl... 44 0.50
10ref|NM_195034.1| Oryza sativa (japonica cultivar-group) putative... 40 7.8
11gb|AC159225.4| Mus musculus chromosome 1, clone RP24-306F17, com... 40 7.8
12gb|AC102568.8| Mus musculus chromosome 1, clone RP23-224O10, com... 40 7.8
13gb|AC007490.7| Homo sapiens chromosome 16 clone RP11-132F7, comp... 40 7.8
14emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4,... 40 7.8
15gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
16gb|AY855346.1| Clostridium difficile bacteriophage phi CD119, co... 40 7.8
17gb|AC010048.5| Drosophila melanogaster 3L BAC RP98-5B23 (Roswell... 40 7.8
18dbj|AB198744.1| Oryza sativa (japonica cultivar-group) gene for ... 40 7.8
19dbj|AB198743.1| Oryza sativa (indica cultivar-group) gene for CP... 40 7.8
20gb|AF394244.1| Morone saxatilis moronecidin precursor, gene, com... 40 7.8
21gb|AF394243.1| Morone chrysops moronecidin precursor, gene, comp... 40 7.8
22gb|AC093514.2| Homo sapiens chromosome 16 clone CTD-2517O22, com... 40 7.8
23dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
24dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
25emb|AL603782.5| Mouse DNA sequence from clone RP23-480M4 on chro... 40 7.8
26gb|AY092414.2| Solanum tuberosum deetiolated 1-like protein mRNA... 40 7.8
27emb|BX000467.10| Zebrafish DNA sequence from clone CH211-1K7 in ... 40 7.8
28gb|AE003535.3| Drosophila melanogaster chromosome 3L, section 50... 40 7.8
29gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
30gb|AC159126.4| Mus musculus chromosome 8, clone RP23-182M11, com... 40 7.8 
>ref|XM_549834.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1809

 Score =  559 bits (282), Expect = e-156
 Identities = 481/542 (88%), Gaps = 4/542 (0%)
 Strand = Plus / Plus

                                                                       
Query: 20  ttctatgaggaatttggttccgagttacactatatacgacataaattgcccagattattc 79
           ||||||||| || ||||||||||||||||||||||  |||||| ||||||||||||||||
Sbjct: 230 ttctatgag-aacttggttccgagttacactatatgtgacatagattgcccagattattc 288

                                                                       
Query: 80  gtttcgcaagttcactgatgatgggaagtatcttgtggcttttagtcgaaaccaccaagn 139
            ||||| || |||||||||||||| || ||||||||||||||||| || |||||||||| 
Sbjct: 289 atttcgtaaattcactgatgatggcaactatcttgtggcttttagccggaaccaccaag- 347

                                                                       
Query: 140 atttgattgtgtaccgtccaatctggttaacgttttcatgccatgaagaatgtgattctc 199
           |||| || ||||||||||| ||||||  ||| ||||||||| ||||   ||| || ||||
Sbjct: 348 atttaatcgtgtaccgtcccatctggccaacattttcatgcaatgagccatgcgactctc 407

                                                                       
Query: 200 atgatcttccggccaatgcagagagatttgacagtttctttaagcagctctactccatct 259
           ||||||||||  |||| ||| ||| ||| ||||| |||||||||||||||||||| || |
Sbjct: 408 atgatcttccacccaaagcaaagaaattcgacagcttctttaagcagctctactcaattt 467

                                                                       
Query: 260 cacttgcatccagcaatgagtacatctgtaaggactttttcctttacatggagtgccatc 319
           |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 468 cacttgcatctagcaatgaatacatctgcaaggactttttcctttacatggagtgccatc 527

                                                                       
Query: 320 aatatggcttatttgcaacgtcaactgcacaaagtaatgacttcaagtgtcactgagggt 379
           | | |||||||||||| || |||||||||||||| || || |||||||| ||||||||||
Sbjct: 528 agtttggcttatttgccacatcaactgcacaaagcaacga-ttcaagtgccactgagggt 586

                                                                       
Query: 380 gcaattcatggtgtaccatcaattgagaaaataactttctatcttgtaaggctagaagat 439
           || |||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct: 587 gctattcatggggtaccatcaattgagaaaattactttctatcttgtcaggctagacgat 646

                                                                       
Query: 440 ggtgcaatactagacgagaaagctttctgcaacgattttatcaatttggctcatagtatt 499
           || ||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 647 ggcgcaatactagatgagaaagctttccgcaatgattttatcaatctggctcatagtatt 706

                                                                       
Query: 500 ggtgcttacttgtatgaggatctggttttgcattgtctctcttcgatatcaaacaataca 559
           || ||||||||||||||||| || | | ||||||||||||||||||||||||||||| ||
Sbjct: 707 ggagcttacttgtatgaggacct-gctatgcattgtctctcttcgatatcaaacaattca 765

             
Query: 560 tg 561
           ||
Sbjct: 766 tg 767
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>dbj|AK100613.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107M18, full
            insert sequence
          Length = 2112

 Score =  559 bits (282), Expect = e-156
 Identities = 481/542 (88%), Gaps = 4/542 (0%)
 Strand = Plus / Plus

                                                                        
Query: 20   ttctatgaggaatttggttccgagttacactatatacgacataaattgcccagattattc 79
            ||||||||| || ||||||||||||||||||||||  |||||| ||||||||||||||||
Sbjct: 533  ttctatgag-aacttggttccgagttacactatatgtgacatagattgcccagattattc 591

                                                                        
Query: 80   gtttcgcaagttcactgatgatgggaagtatcttgtggcttttagtcgaaaccaccaagn 139
             ||||| || |||||||||||||| || ||||||||||||||||| || |||||||||| 
Sbjct: 592  atttcgtaaattcactgatgatggcaactatcttgtggcttttagccggaaccaccaag- 650

                                                                        
Query: 140  atttgattgtgtaccgtccaatctggttaacgttttcatgccatgaagaatgtgattctc 199
            |||| || ||||||||||| ||||||  ||| ||||||||| ||||   ||| || ||||
Sbjct: 651  atttaatcgtgtaccgtcccatctggccaacattttcatgcaatgagccatgcgactctc 710

                                                                        
Query: 200  atgatcttccggccaatgcagagagatttgacagtttctttaagcagctctactccatct 259
            ||||||||||  |||| ||| ||| ||| ||||| |||||||||||||||||||| || |
Sbjct: 711  atgatcttccacccaaagcaaagaaattcgacagcttctttaagcagctctactcaattt 770

                                                                        
Query: 260  cacttgcatccagcaatgagtacatctgtaaggactttttcctttacatggagtgccatc 319
            |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 771  cacttgcatctagcaatgaatacatctgcaaggactttttcctttacatggagtgccatc 830

                                                                        
Query: 320  aatatggcttatttgcaacgtcaactgcacaaagtaatgacttcaagtgtcactgagggt 379
            | | |||||||||||| || |||||||||||||| || || |||||||| ||||||||||
Sbjct: 831  agtttggcttatttgccacatcaactgcacaaagcaacga-ttcaagtgccactgagggt 889

                                                                        
Query: 380  gcaattcatggtgtaccatcaattgagaaaataactttctatcttgtaaggctagaagat 439
            || |||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct: 890  gctattcatggggtaccatcaattgagaaaattactttctatcttgtcaggctagacgat 949

                                                                        
Query: 440  ggtgcaatactagacgagaaagctttctgcaacgattttatcaatttggctcatagtatt 499
            || ||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 950  ggcgcaatactagatgagaaagctttccgcaatgattttatcaatctggctcatagtatt 1009

                                                                        
Query: 500  ggtgcttacttgtatgaggatctggttttgcattgtctctcttcgatatcaaacaataca 559
            || ||||||||||||||||| || | | ||||||||||||||||||||||||||||| ||
Sbjct: 1010 ggagcttacttgtatgaggacct-gctatgcattgtctctcttcgatatcaaacaattca 1068

              
Query: 560  tg 561
            ||
Sbjct: 1069 tg 1070
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>dbj|AK058683.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A06, full
           insert sequence
          Length = 1809

 Score =  559 bits (282), Expect = e-156
 Identities = 481/542 (88%), Gaps = 4/542 (0%)
 Strand = Plus / Plus

                                                                       
Query: 20  ttctatgaggaatttggttccgagttacactatatacgacataaattgcccagattattc 79
           ||||||||| || ||||||||||||||||||||||  |||||| ||||||||||||||||
Sbjct: 230 ttctatgag-aacttggttccgagttacactatatgtgacatagattgcccagattattc 288

                                                                       
Query: 80  gtttcgcaagttcactgatgatgggaagtatcttgtggcttttagtcgaaaccaccaagn 139
            ||||| || |||||||||||||| || ||||||||||||||||| || |||||||||| 
Sbjct: 289 atttcgtaaattcactgatgatggcaactatcttgtggcttttagccggaaccaccaag- 347

                                                                       
Query: 140 atttgattgtgtaccgtccaatctggttaacgttttcatgccatgaagaatgtgattctc 199
           |||| || ||||||||||| ||||||  ||| ||||||||| ||||   ||| || ||||
Sbjct: 348 atttaatcgtgtaccgtcccatctggccaacattttcatgcaatgagccatgcgactctc 407

                                                                       
Query: 200 atgatcttccggccaatgcagagagatttgacagtttctttaagcagctctactccatct 259
           ||||||||||  |||| ||| ||| ||| ||||| |||||||||||||||||||| || |
Sbjct: 408 atgatcttccacccaaagcaaagaaattcgacagcttctttaagcagctctactcaattt 467

                                                                       
Query: 260 cacttgcatccagcaatgagtacatctgtaaggactttttcctttacatggagtgccatc 319
           |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 468 cacttgcatctagcaatgaatacatctgcaaggactttttcctttacatggagtgccatc 527

                                                                       
Query: 320 aatatggcttatttgcaacgtcaactgcacaaagtaatgacttcaagtgtcactgagggt 379
           | | |||||||||||| || |||||||||||||| || || |||||||| ||||||||||
Sbjct: 528 agtttggcttatttgccacatcaactgcacaaagcaacga-ttcaagtgccactgagggt 586

                                                                       
Query: 380 gcaattcatggtgtaccatcaattgagaaaataactttctatcttgtaaggctagaagat 439
           || |||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct: 587 gctattcatggggtaccatcaattgagaaaattactttctatcttgtcaggctagacgat 646

                                                                       
Query: 440 ggtgcaatactagacgagaaagctttctgcaacgattttatcaatttggctcatagtatt 499
           || ||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 647 ggcgcaatactagatgagaaagctttccgcaatgattttatcaatctggctcatagtatt 706

                                                                       
Query: 500 ggtgcttacttgtatgaggatctggttttgcattgtctctcttcgatatcaaacaataca 559
           || ||||||||||||||||| || | | ||||||||||||||||||||||||||||| ||
Sbjct: 707 ggagcttacttgtatgaggacct-gctatgcattgtctctcttcgatatcaaacaattca 765

             
Query: 560 tg 561
           ||
Sbjct: 766 tg 767
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score =  402 bits (203), Expect = e-109
 Identities = 359/407 (88%), Gaps = 3/407 (0%)
 Strand = Plus / Minus

                                                                          
Query: 20     ttctatgaggaatttggttccgagttacactatatacgacataaattgcccagattattc 79
              ||||||||| || ||||||||||||||||||||||  |||||| ||||||||||||||||
Sbjct: 255080 ttctatgag-aacttggttccgagttacactatatgtgacatagattgcccagattattc 255022

                                                                          
Query: 80     gtttcgcaagttcactgatgatgggaagtatcttgtggcttttagtcgaaaccaccaagn 139
               ||||| || |||||||||||||| || ||||||||||||||||| || |||||||||| 
Sbjct: 255021 atttcgtaaattcactgatgatggcaactatcttgtggcttttagccggaaccaccaag- 254963

                                                                          
Query: 140    atttgattgtgtaccgtccaatctggttaacgttttcatgccatgaagaatgtgattctc 199
              |||| || ||||||||||| ||||||  ||| ||||||||| ||||   ||| || ||||
Sbjct: 254962 atttaatcgtgtaccgtcccatctggccaacattttcatgcaatgagccatgcgactctc 254903

                                                                          
Query: 200    atgatcttccggccaatgcagagagatttgacagtttctttaagcagctctactccatct 259
              ||||||||||  |||| ||| ||| ||| ||||| |||||||||||||||||||| || |
Sbjct: 254902 atgatcttccacccaaagcaaagaaattcgacagcttctttaagcagctctactcaattt 254843

                                                                          
Query: 260    cacttgcatccagcaatgagtacatctgtaaggactttttcctttacatggagtgccatc 319
              |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 254842 cacttgcatctagcaatgaatacatctgcaaggactttttcctttacatggagtgccatc 254783

                                                                          
Query: 320    aatatggcttatttgcaacgtcaactgcacaaagtaatgacttcaagtgtcactgagggt 379
              | | |||||||||||| || |||||||||||||| || || |||||||| ||||||||||
Sbjct: 254782 agtttggcttatttgccacatcaactgcacaaagcaacga-ttcaagtgccactgagggt 254724

                                                             
Query: 380    gcaattcatggtgtaccatcaattgagaaaataactttctatcttgt 426
              || |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 254723 gctattcatggggtaccatcaattgagaaaattactttctatcttgt 254677



 Score =  163 bits (82), Expect = 8e-37
 Identities = 122/134 (91%), Gaps = 1/134 (0%)
 Strand = Plus / Minus

                                                                          
Query: 428    aggctagaagatggtgcaatactagacgagaaagctttctgcaacgattttatcaatttg 487
              |||||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||| ||
Sbjct: 254555 aggctagacgatggcgcaatactagatgagaaagctttccgcaatgattttatcaatctg 254496

                                                                          
Query: 488    gctcatagtattggtgcttacttgtatgaggatctggttttgcattgtctctcttcgata 547
              |||||||||||||| ||||||||||||||||| || | | ||||||||||||||||||||
Sbjct: 254495 gctcatagtattggagcttacttgtatgaggacct-gctatgcattgtctctcttcgata 254437

                            
Query: 548    tcaaacaatacatg 561
              ||||||||| ||||
Sbjct: 254436 tcaaacaattcatg 254423
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>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0005A05
          Length = 190834

 Score =  402 bits (203), Expect = e-109
 Identities = 359/407 (88%), Gaps = 3/407 (0%)
 Strand = Plus / Minus

                                                                        
Query: 20   ttctatgaggaatttggttccgagttacactatatacgacataaattgcccagattattc 79
            ||||||||| || ||||||||||||||||||||||  |||||| ||||||||||||||||
Sbjct: 6918 ttctatgag-aacttggttccgagttacactatatgtgacatagattgcccagattattc 6860

                                                                        
Query: 80   gtttcgcaagttcactgatgatgggaagtatcttgtggcttttagtcgaaaccaccaagn 139
             ||||| || |||||||||||||| || ||||||||||||||||| || |||||||||| 
Sbjct: 6859 atttcgtaaattcactgatgatggcaactatcttgtggcttttagccggaaccaccaag- 6801

                                                                        
Query: 140  atttgattgtgtaccgtccaatctggttaacgttttcatgccatgaagaatgtgattctc 199
            |||| || ||||||||||| ||||||  ||| ||||||||| ||||   ||| || ||||
Sbjct: 6800 atttaatcgtgtaccgtcccatctggccaacattttcatgcaatgagccatgcgactctc 6741

                                                                        
Query: 200  atgatcttccggccaatgcagagagatttgacagtttctttaagcagctctactccatct 259
            ||||||||||  |||| ||| ||| ||| ||||| |||||||||||||||||||| || |
Sbjct: 6740 atgatcttccacccaaagcaaagaaattcgacagcttctttaagcagctctactcaattt 6681

                                                                        
Query: 260  cacttgcatccagcaatgagtacatctgtaaggactttttcctttacatggagtgccatc 319
            |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 6680 cacttgcatctagcaatgaatacatctgcaaggactttttcctttacatggagtgccatc 6621

                                                                        
Query: 320  aatatggcttatttgcaacgtcaactgcacaaagtaatgacttcaagtgtcactgagggt 379
            | | |||||||||||| || |||||||||||||| || || |||||||| ||||||||||
Sbjct: 6620 agtttggcttatttgccacatcaactgcacaaagcaacga-ttcaagtgccactgagggt 6562

                                                           
Query: 380  gcaattcatggtgtaccatcaattgagaaaataactttctatcttgt 426
            || |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 6561 gctattcatggggtaccatcaattgagaaaattactttctatcttgt 6515



 Score =  163 bits (82), Expect = 8e-37
 Identities = 122/134 (91%), Gaps = 1/134 (0%)
 Strand = Plus / Minus

                                                                        
Query: 428  aggctagaagatggtgcaatactagacgagaaagctttctgcaacgattttatcaatttg 487
            |||||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||| ||
Sbjct: 6393 aggctagacgatggcgcaatactagatgagaaagctttccgcaatgattttatcaatctg 6334

                                                                        
Query: 488  gctcatagtattggtgcttacttgtatgaggatctggttttgcattgtctctcttcgata 547
            |||||||||||||| ||||||||||||||||| || | | ||||||||||||||||||||
Sbjct: 6333 gctcatagtattggagcttacttgtatgaggacct-gctatgcattgtctctcttcgata 6275

                          
Query: 548  tcaaacaatacatg 561
            ||||||||| ||||
Sbjct: 6274 tcaaacaattcatg 6261
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>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0436E04
          Length = 144644

 Score =  402 bits (203), Expect = e-109
 Identities = 359/407 (88%), Gaps = 3/407 (0%)
 Strand = Plus / Minus

                                                                         
Query: 20    ttctatgaggaatttggttccgagttacactatatacgacataaattgcccagattattc 79
             ||||||||| || ||||||||||||||||||||||  |||||| ||||||||||||||||
Sbjct: 96750 ttctatgag-aacttggttccgagttacactatatgtgacatagattgcccagattattc 96692

                                                                         
Query: 80    gtttcgcaagttcactgatgatgggaagtatcttgtggcttttagtcgaaaccaccaagn 139
              ||||| || |||||||||||||| || ||||||||||||||||| || |||||||||| 
Sbjct: 96691 atttcgtaaattcactgatgatggcaactatcttgtggcttttagccggaaccaccaag- 96633

                                                                         
Query: 140   atttgattgtgtaccgtccaatctggttaacgttttcatgccatgaagaatgtgattctc 199
             |||| || ||||||||||| ||||||  ||| ||||||||| ||||   ||| || ||||
Sbjct: 96632 atttaatcgtgtaccgtcccatctggccaacattttcatgcaatgagccatgcgactctc 96573

                                                                         
Query: 200   atgatcttccggccaatgcagagagatttgacagtttctttaagcagctctactccatct 259
             ||||||||||  |||| ||| ||| ||| ||||| |||||||||||||||||||| || |
Sbjct: 96572 atgatcttccacccaaagcaaagaaattcgacagcttctttaagcagctctactcaattt 96513

                                                                         
Query: 260   cacttgcatccagcaatgagtacatctgtaaggactttttcctttacatggagtgccatc 319
             |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 96512 cacttgcatctagcaatgaatacatctgcaaggactttttcctttacatggagtgccatc 96453

                                                                         
Query: 320   aatatggcttatttgcaacgtcaactgcacaaagtaatgacttcaagtgtcactgagggt 379
             | | |||||||||||| || |||||||||||||| || || |||||||| ||||||||||
Sbjct: 96452 agtttggcttatttgccacatcaactgcacaaagcaacga-ttcaagtgccactgagggt 96394

                                                            
Query: 380   gcaattcatggtgtaccatcaattgagaaaataactttctatcttgt 426
             || |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 96393 gctattcatggggtaccatcaattgagaaaattactttctatcttgt 96347



 Score =  163 bits (82), Expect = 8e-37
 Identities = 122/134 (91%), Gaps = 1/134 (0%)
 Strand = Plus / Minus

                                                                         
Query: 428   aggctagaagatggtgcaatactagacgagaaagctttctgcaacgattttatcaatttg 487
             |||||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||| ||
Sbjct: 96225 aggctagacgatggcgcaatactagatgagaaagctttccgcaatgattttatcaatctg 96166

                                                                         
Query: 488   gctcatagtattggtgcttacttgtatgaggatctggttttgcattgtctctcttcgata 547
             |||||||||||||| ||||||||||||||||| || | | ||||||||||||||||||||
Sbjct: 96165 gctcatagtattggagcttacttgtatgaggacct-gctatgcattgtctctcttcgata 96107

                           
Query: 548   tcaaacaatacatg 561
             ||||||||| ||||
Sbjct: 96106 tcaaacaattcatg 96093
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>gb|AC133171.5| Mus musculus BAC clone RP24-271D14 from chromosome 18, complete sequence
          Length = 126873

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 17     caattctatgaggaatttggtt 38
              ||||||||||||||||||||||
Sbjct: 114620 caattctatgaggaatttggtt 114599
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>emb|BX544872.8| Zebrafish DNA sequence from clone DKEY-58L12 in linkage group 17,
             complete sequence
          Length = 80171

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 516   aggatctggttttgcattgtct 537
             ||||||||||||||||||||||
Sbjct: 50887 aggatctggttttgcattgtct 50908
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>gb|AC150274.2| Mus musculus BAC clone RP23-348G11 from 18, complete sequence
          Length = 194318

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 17    caattctatgaggaatttggtt 38
             ||||||||||||||||||||||
Sbjct: 44494 caattctatgaggaatttggtt 44473
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>ref|NM_195034.1| Oryza sativa (japonica cultivar-group) putative CPD photolyase
            (OSJNAb0015J03.12), mRNA
          Length = 1698

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 285  ctgtaaggactttttccttt 304
            ||||||||||||||||||||
Sbjct: 1322 ctgtaaggactttttccttt 1341
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>gb|AC159225.4| Mus musculus chromosome 1, clone RP24-306F17, complete sequence
          Length = 168805

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   tcaattgagaaaataacttt 417
             ||||||||||||||||||||
Sbjct: 73957 tcaattgagaaaataacttt 73976
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>gb|AC102568.8| Mus musculus chromosome 1, clone RP23-224O10, complete sequence
          Length = 239053

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   tcaattgagaaaataacttt 417
             ||||||||||||||||||||
Sbjct: 30948 tcaattgagaaaataacttt 30929
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>gb|AC007490.7| Homo sapiens chromosome 16 clone RP11-132F7, complete sequence
          Length = 169207

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 234    tttctttaagcagctctactccat 257
              |||||||| |||||||||||||||
Sbjct: 160095 tttctttacgcagctctactccat 160118
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>emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011J08,
             complete sequence
          Length = 157734

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   atcaattgagaaaataactt 416
             ||||||||||||||||||||
Sbjct: 82691 atcaattgagaaaataactt 82672
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>gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0015J03, complete sequence
          Length = 165933

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   ctgtaaggactttttccttt 304
             ||||||||||||||||||||
Sbjct: 82758 ctgtaaggactttttccttt 82739
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>gb|AY855346.1| Clostridium difficile bacteriophage phi CD119, complete genome
          Length = 53325

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 407   aaaataactttctatcttgt 426
             ||||||||||||||||||||
Sbjct: 36469 aaaataactttctatcttgt 36450
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>gb|AC010048.5| Drosophila melanogaster 3L BAC RP98-5B23 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 175316

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 315    ccatcaatatggcttatttgcaac 338
              |||||||||| |||||||||||||
Sbjct: 101616 ccatcaatattgcttatttgcaac 101639
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>dbj|AB198744.1| Oryza sativa (japonica cultivar-group) gene for CPD photolyase,
            complete cds, cultivar:Nipponbare
          Length = 6912

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 285  ctgtaaggactttttccttt 304
            ||||||||||||||||||||
Sbjct: 5577 ctgtaaggactttttccttt 5596
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>dbj|AB198743.1| Oryza sativa (indica cultivar-group) gene for CPD photolyase,
            complete cds, cultivar:Kasalath
          Length = 6930

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 285  ctgtaaggactttttccttt 304
            ||||||||||||||||||||
Sbjct: 5593 ctgtaaggactttttccttt 5612
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>gb|AF394244.1| Morone saxatilis moronecidin precursor, gene, complete cds
          Length = 2958

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  cggccaatgcagagagattt 228
            ||||||||||||||||||||
Sbjct: 998  cggccaatgcagagagattt 1017
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>gb|AF394243.1| Morone chrysops moronecidin precursor, gene, complete cds
          Length = 2280

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 209 cggccaatgcagagagattt 228
           ||||||||||||||||||||
Sbjct: 970 cggccaatgcagagagattt 989
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>gb|AC093514.2| Homo sapiens chromosome 16 clone CTD-2517O22, complete sequence
          Length = 147330

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 234    tttctttaagcagctctactccat 257
              |||||||| |||||||||||||||
Sbjct: 135338 tttctttacgcagctctactccat 135315
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 397      atcaattgagaaaataactt 416
                ||||||||||||||||||||
Sbjct: 29173232 atcaattgagaaaataactt 29173213
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 285     ctgtaaggactttttccttt 304
               ||||||||||||||||||||
Sbjct: 4315217 ctgtaaggactttttccttt 4315198
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>emb|AL603782.5| Mouse DNA sequence from clone RP23-480M4 on chromosome 8, complete
             sequence
          Length = 175157

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 504   cttacttgtatgaggatctg 523
             ||||||||||||||||||||
Sbjct: 57148 cttacttgtatgaggatctg 57129
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>gb|AY092414.2| Solanum tuberosum deetiolated 1-like protein mRNA, complete cds
          Length = 1855

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 76  attcgtttcgcaagttcactgatgatgg 103
           |||| |||||||||||||| ||||||||
Sbjct: 146 attcatttcgcaagttcacggatgatgg 173
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>emb|BX000467.10| Zebrafish DNA sequence from clone CH211-1K7 in linkage group 19,
             complete sequence
          Length = 120440

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 519   atctggttttgcattgtctc 538
             ||||||||||||||||||||
Sbjct: 52093 atctggttttgcattgtctc 52074
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>gb|AE003535.3| Drosophila melanogaster chromosome 3L, section 50 of 83 of the complete
              sequence
          Length = 278708

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 315    ccatcaatatggcttatttgcaac 338
              |||||||||| |||||||||||||
Sbjct: 266510 ccatcaatattgcttatttgcaac 266533
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 285     ctgtaaggactttttccttt 304
               ||||||||||||||||||||
Sbjct: 4316038 ctgtaaggactttttccttt 4316019
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>gb|AC159126.4| Mus musculus chromosome 8, clone RP23-182M11, complete sequence
          Length = 238838

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 504    cttacttgtatgaggatctg 523
              ||||||||||||||||||||
Sbjct: 229509 cttacttgtatgaggatctg 229528


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,964,946
Number of Sequences: 3902068
Number of extensions: 4964946
Number of successful extensions: 92403
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92198
Number of HSP's gapped (non-prelim): 187
length of query: 577
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 554
effective length of database: 17,143,297,704
effective search space: 9497386928016
effective search space used: 9497386928016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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