ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31a01 |
|---|---|
| Clone Library Name | barley_pub |
>BTAF1_HUMAN (O14981) TATA-binding protein-associated factor 172 (EC 3.6.1.-)| (ATP-dependent helicase BTAF1) (TBP-associated factor 172) (TAF-172) (TAF(II)170) (B-TFIID transcription factor-associated 170 kDa subunit) Length = 1849 Score = 51.2 bits (121), Expect = 9e-07 Identities = 31/91 (34%), Positives = 45/91 (49%) Frame = +1 Query: 1 QVSVANAVINSEXC*PEXHXTLXQLLDLFTSTPASRKASVLPSSSSATEEESNKGKSGRK 180 ++++AN VI+ E + T QLLDLFT E+++ SG+ Sbjct: 1771 KMNIANTVISQENSSLQSMGT-DQLLDLFTL------------DKDGKAEKADTSTSGKA 1817 Query: 181 GLKSILSGLDELWDQSQYADEYDMNQFLAKL 273 +KSIL L +LWDQ QY EY + F+ L Sbjct: 1818 SMKSILENLSDLWDQEQYDSEYSLENFMHSL 1848
>MOT1_SCHPO (O43065) Probable helicase mot1 (EC 3.6.1.-) (TBP-associated factor| mot1) (Modifier of transcription 1) Length = 1953 Score = 48.9 bits (115), Expect = 5e-06 Identities = 31/91 (34%), Positives = 53/91 (58%) Frame = +1 Query: 1 QVSVANAVINSEXC*PEXHXTLXQLLDLFTSTPASRKASVLPSSSSATEEESNKGKSGRK 180 +++VA+ V+N + T Q+LDLF +T A + +V +E+ + +G SG Sbjct: 1863 KMNVASTVVNQQNAGLSSIGT-DQILDLFNTT-ADEQQTVQNIDKEESEDAAGRGLSGTS 1920 Query: 181 GLKSILSGLDELWDQSQYADEYDMNQFLAKL 273 K L GL E+WD+SQY DE++++ F++ L Sbjct: 1921 --KKALEGLPEMWDESQY-DEFNLDGFISTL 1948
>MOT1_YEAST (P32333) TATA-binding protein-associated factor MOT1 (EC 3.6.1.-)| (TBP-associated factor MOT1) (Modifier of transcription 1) Length = 1867 Score = 41.2 bits (95), Expect = 0.001 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 6/97 (6%) Frame = +1 Query: 1 QVSVANAVINSEXC*PEXHXTLXQLLDLF-----TSTPASRKASVLPSSSSATEEESNK- 162 ++++A+ V+N + T QLLDLF TS K + ++ E+ +N+ Sbjct: 1773 KMNIASTVVNQQNSGLASMDT-HQLLDLFDPDNVTSQDNEEKNNGDSQAAKGMEDIANET 1831 Query: 163 GKSGRKGLKSILSGLDELWDQSQYADEYDMNQFLAKL 273 G +G+ K L L ELWD SQY +EY+++ F+ L Sbjct: 1832 GLTGKA--KEALGELKELWDPSQYEEEYNLDTFIKTL 1866
>ALX4_MOUSE (O35137) Homeobox protein aristaless-like 4 (ALX-4)| Length = 399 Score = 32.0 bits (71), Expect = 0.59 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Frame = +1 Query: 97 PASRKASVLPSSSSATEEESNKGKSGRKGLKSI---LSGLDELWDQSQYADEYDMNQ 258 P R ++ +PS T+ ESNKGK R L L++++ ++ Y D Y Q Sbjct: 178 PQDRASAEIPSPLEKTDSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQ 234
>ALX4_HUMAN (Q9H161) Homeobox protein aristaless-like 4| Length = 411 Score = 31.6 bits (70), Expect = 0.78 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Frame = +1 Query: 97 PASRKASVLPSSSSATEEESNKGKSGRKGLKSI---LSGLDELWDQSQYADEYDMNQ 258 P R +S LPS + ESNKGK R L L++++ ++ Y D Y Q Sbjct: 190 PQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQ 246
>Y746_CHLPN (Q9Z7F9) UPF0159 protein CPn_0746/CP1126/CPj0746/CpB0774| Length = 531 Score = 30.0 bits (66), Expect = 2.3 Identities = 20/65 (30%), Positives = 28/65 (43%) Frame = +1 Query: 46 PEXHXTLXQLLDLFTSTPASRKASVLPSSSSATEEESNKGKSGRKGLKSILSGLDELWDQ 225 P + +L L+D P +L SS SA E +K +GL+ + G D L D Sbjct: 331 PYSNRSLTDLIDYCKKMPHEDLVQILESSVSARENRRHKSP---RGLECVEFGFDILADF 387 Query: 226 SQYAD 240 Y D Sbjct: 388 GAYRD 392
>COLL1_MIMIV (Q5UPE4) Collagen-like protein 1| Length = 945 Score = 29.6 bits (65), Expect = 2.9 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 124 PSSSSATEEESNKGKSGRKGLKSILSGLDELWDQSQYADEYD 249 P +S + E+ +KG SG GLK E DQ + D+ D Sbjct: 85 PGASGSKGEKGDKGSSGEAGLKGEQGTKGEQGDQGEQGDKGD 126
>ZBT7A_MOUSE (O88939) Zinc finger and BTB domain-containing protein 7A| (Leukemia/lymphoma-related factor) Length = 565 Score = 28.9 bits (63), Expect = 5.0 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Frame = -3 Query: 403 SEAGEKQKICEPTRQ-TDSFPIYSTLYTSEQASERPSCEVRFTR*ALPGTGSYHTRPHTA 227 ++A +K ICE Q P + +T E+ E C+VRFTR H R HT Sbjct: 372 AKAFQKCPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTR---QDKLKVHMRKHTG 428 Query: 226 TGP 218 P Sbjct: 429 EKP 431
>SFTPA_MOUSE (P35242) Pulmonary surfactant-associated protein A precursor (SP-A)| (PSP-A) (PSAP) Length = 248 Score = 28.9 bits (63), Expect = 5.0 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +1 Query: 121 LPSSSSATEEESNKGKSGRKGLKSILSGLDELWDQSQYADEYDMNQFLAKLN 276 LP + A E +KG+ G +GL + LDE + Y ++ + Q + L+ Sbjct: 75 LPGAPGAPGEHGDKGEPGERGLPGFPAYLDEELQTASYEIKHQILQTMGVLS 126
>ZBT7A_HUMAN (O95365) Zinc finger and BTB domain-containing protein 7A| (Leukemia/lymphoma related factor) (Factor that binds to inducer of short transcripts protein 1) (Factor binding IST protein 1) (FBI-1) (HIV-1 1st-binding protein 1) (TTF-I-interacting Length = 584 Score = 28.9 bits (63), Expect = 5.0 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Frame = -3 Query: 403 SEAGEKQKICEPTRQ-TDSFPIYSTLYTSEQASERPSCEVRFTR*ALPGTGSYHTRPHTA 227 ++A +K ICE Q P + +T E+ E C+VRFTR H R HT Sbjct: 378 AKAFQKCPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTR---QDKLKVHMRKHTG 434 Query: 226 TGP 218 P Sbjct: 435 EKP 437
>ZBT7A_RAT (Q9QZ48) Zinc finger and BTB domain-containing protein 7A| (Leukemia/lymphoma-related factor) (Osteoclast-derived zinc finger protein) Length = 569 Score = 28.9 bits (63), Expect = 5.0 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Frame = -3 Query: 403 SEAGEKQKICEPTRQ-TDSFPIYSTLYTSEQASERPSCEVRFTR*ALPGTGSYHTRPHTA 227 ++A +K ICE Q P + +T E+ E C+VRFTR H R HT Sbjct: 372 AKAFQKCPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTR---QDKLKVHMRKHTG 428 Query: 226 TGP 218 P Sbjct: 429 EKP 431
>ADCY5_MOUSE (P84309) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase| type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5) (Fragment) Length = 795 Score = 28.9 bits (63), Expect = 5.0 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +1 Query: 151 ESNKGKSGRKGLKSILSGLDELWDQSQYADEYDMNQFLAKL 273 +S K+G+ +K+I +L DQ +Y +E+ N F K+ Sbjct: 671 DSTYDKAGKTHIKAIADFAMKLMDQMKYINEHSFNNFQMKI 711
>ZN688_HUMAN (Q8WV14) Zinc finger protein 688| Length = 782 Score = 28.5 bits (62), Expect = 6.6 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Frame = -3 Query: 403 SEAGEKQKICEPTRQTDSFP----IYSTLYTSEQASERPSCEVRFTR*ALPGTGSYHTRP 236 + GEK C + ++P I+ +T E+ P C +RF A + H R Sbjct: 262 AHTGEKPYACSDCKSRFTYPYLLAIHQRKHTGEKPYSCPDCSLRF---AYTSLLAIHRRI 318 Query: 235 HTATGPTARP 206 HT P P Sbjct: 319 HTGEKPYPCP 328
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 28.5 bits (62), Expect = 6.6 Identities = 26/89 (29%), Positives = 30/89 (33%), Gaps = 11/89 (12%) Frame = +2 Query: 53 TMXHXTSYSI-CSLQPLLPE-----RRRFSQAVRVPRKKRATRGNQVARASSQS*AG--- 205 T H S I C L P L RR + R P +R T + +S S AG Sbjct: 119 TAEHKDSRGIYCRLPPRLGPAHDLPRRPLRRRHRKPGHRRRTSTTSTSASSGSSSAGSTG 178 Query: 206 --WTSCGXXXXXXXXXXXXXXWQSSTGEP 286 WTS WQ ST P Sbjct: 179 SRWTSASTRGASTSPRATPPTWQRSTSMP 207
>CLPX_BORPE (Q7VXI6) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 434 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = +1 Query: 118 VLPSSSSATEEESNKGKSGRKGLKSILSG--LDELWD 222 V P + A ++ K K+G +GL+SIL G LD ++D Sbjct: 349 VRPDALKAISRKALKRKTGARGLRSILEGALLDTMYD 385
>CLPX_BORPA (Q7W8X1) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 434 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = +1 Query: 118 VLPSSSSATEEESNKGKSGRKGLKSILSG--LDELWD 222 V P + A ++ K K+G +GL+SIL G LD ++D Sbjct: 349 VRPDALKAISRKALKRKTGARGLRSILEGALLDTMYD 385
>CLPX_BORBR (Q7WK82) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 434 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = +1 Query: 118 VLPSSSSATEEESNKGKSGRKGLKSILSG--LDELWD 222 V P + A ++ K K+G +GL+SIL G LD ++D Sbjct: 349 VRPDALKAISRKALKRKTGARGLRSILEGALLDTMYD 385
>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)| Length = 4065 Score = 28.5 bits (62), Expect = 6.6 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = +1 Query: 1 QVSVANAVINSEXC*PEXHXTLXQLLDLFTSTPASRKASVLPSSSSATEEESNKGKSGRK 180 + ++ +A +SE E + ++ ST A ++ VLPS ATE +SN + R+ Sbjct: 1587 ETALGHATESSEDGSDEGQPGTSRETNVGASTTAPQQLPVLPSQQPATESQSNTPRITRE 1646 Query: 181 GLKSILSGL-DELWDQS 228 L + L D L D+S Sbjct: 1647 DLVEERAKLYDTLIDRS 1663
>VCIP1_MOUSE (Q8CDG3) Deubiquitinating protein VCIP135 (EC 3.4.22.-)| (Valosin-containing protein p97/p47 complex-interacting protein p135) (Valosin-containing protein p97/p47 complex-interacting protein 1) Length = 1220 Score = 28.5 bits (62), Expect = 6.6 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = +3 Query: 147 RREQQGEIRSQGPQVNPERAGRAVGPVAVCGRV*YEPVPGKAQRVNLTSHDGRSLACSL 323 ++EQ+G+ R+ P R G + P A + Y P K +++ +T++DGR +L Sbjct: 735 KQEQKGQPRTVSPSTI--RDGPSSAP-ATPTKAPYSPTTSKEKKIRITTNDGRQSMVTL 790
>MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1| light chain LC1] Length = 2468 Score = 28.5 bits (62), Expect = 6.6 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Frame = +1 Query: 46 PEXHXTLXQLLDLFTSTPASRKASVLPSSSSATEEESNKG-------KSGRKGLKSILSG 204 P+ + ++L S P S S SA ++ S +G KSG++G +S Sbjct: 1385 PDSESPIEKVLSPLRSPPLIGSESAYESFLSADDKASGRGAESPFEEKSGKQGSPDQVSP 1444 Query: 205 LDELWDQSQYADEYD 249 + E+ S Y D+ + Sbjct: 1445 VSEMTSTSLYQDKQE 1459
>VCIP1_HUMAN (Q96JH7) Deubiquitinating protein VCIP135 (EC 3.4.22.-)| (Valosin-containing protein p97/p47 complex-interacting protein p135) (Valosin-containing protein p97/p47 complex-interacting protein 1) Length = 1222 Score = 28.5 bits (62), Expect = 6.6 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = +3 Query: 147 RREQQGEIRSQGPQVNPERAGRAVGPVAVCGRV*YEPVPGKAQRVNLTSHDGRSLACSL 323 ++EQ+G+ R+ P R G + P A + Y P K +++ +T++DGR +L Sbjct: 736 KQEQKGQPRTVSPSTI--RDGPSSAP-ATPTKAPYSPTTSKEKKIRITTNDGRQSMVTL 791
>ZN567_HUMAN (Q8N184) Zinc finger protein 567| Length = 616 Score = 28.5 bits (62), Expect = 6.6 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Frame = -3 Query: 394 GEKQKICEPT----RQTDSFPIYSTLYTSEQASERPSCEVRFTR*ALPGTGSYHTRPHTA 227 GEK +C RQ + ++ ++T +++ E P C F+R +H R HT Sbjct: 498 GEKPYVCNECGKSFRQKATLTVHQKIHTGQKSYECPQCGKAFSR---KSYLIHHQRTHTG 554 Query: 226 TGP 218 P Sbjct: 555 EKP 557
>VCIP1_RAT (Q8CF97) Deubiquitinating protein VCIP135 (EC 3.4.22.-)| (Valosin-containing protein p97/p47 complex-interacting protein p135) (Valosin-containing protein p97/p47 complex-interacting protein 1) Length = 1221 Score = 28.5 bits (62), Expect = 6.6 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = +3 Query: 147 RREQQGEIRSQGPQVNPERAGRAVGPVAVCGRV*YEPVPGKAQRVNLTSHDGRSLACSL 323 ++EQ+G+ R+ P R G + P A + Y P K +++ +T++DGR +L Sbjct: 735 KQEQKGQPRTVSPSTI--RDGPSSAP-ATPTKAPYSPTTSKEKKIRITTNDGRQSMVTL 790
>RUTA_ECOLI (P75898) Putative monooxygenase rutA (EC 1.14.-.-) (Pyrimidine| utilization protein A) Length = 363 Score = 28.1 bits (61), Expect = 8.6 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = +3 Query: 72 ATRFVHFNPCFQKGVGSPKQFECHGRREQQGEIRSQGPQVNPERAGRAVG 221 + R+ FN CF KGV +P F R +Q E+ GR VG Sbjct: 197 SARYADFNFCFGKGVNTPTAFAPTAARMKQA----------AEQTGRDVG 236
>HS12B_HUMAN (Q96MM6) Heat shock 70 kDa protein 12B| Length = 686 Score = 28.1 bits (61), Expect = 8.6 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Frame = +1 Query: 64 LXQLLDLFTSTPASRKASV---LPSSSSATEEESNKGKSGRKGLKSILSGLDELWDQSQY 234 L QLLDL P + + SS E+ + + R L + SG+ ELW + Q Sbjct: 255 LHQLLDLSGRAPGGGRLGERRSIDSSFRQAREQLRRSRHSRTFL--VESGVGELWAEMQA 312 Query: 235 ADEY 246 D Y Sbjct: 313 GDRY 316
>ADCY5_RAT (Q04400) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase| type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5) Length = 1262 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +1 Query: 151 ESNKGKSGRKGLKSILSGLDELWDQSQYADEYDMNQFLAKL 273 +S K+G+ +K++ +L DQ +Y +E+ N F K+ Sbjct: 1138 DSTYDKAGKTHIKALADFAMKLMDQMKYINEHSFNNFQMKI 1178
>CLPB_CLOAB (Q97KG0) Chaperone clpB| Length = 865 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = +1 Query: 106 RKASVLPSSSSATEEESNKGKSGRKGLKSILSGLDELWDQSQYAD-EYDMNQ 258 ++ S L A + +K K+ +G+K + + LDE+ Q + A+ EYD+N+ Sbjct: 450 KELSDLKDKDKAMTAKYDKEKAQIQGIKELKTKLDEIRGQIEKAEREYDLNK 501 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,898,141 Number of Sequences: 219361 Number of extensions: 1032765 Number of successful extensions: 3492 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3379 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3487 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
