ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags31a01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017288.1| Zea mays clone EL01N0314H06.c mRNA sequence Length = 1342 Score = 83.8 bits (42), Expect = 4e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 205 ctggacgagctgtgggaccagtcgcagtatgcggacgagtatgatatgaaccagttcctg 264 ||||| ||||| ||||| |||||||||||||| || ||||||||| |||||||||||||| Sbjct: 1021 ctggatgagctttgggatcagtcgcagtatgccgatgagtatgatctgaaccagttcctg 1080 Query: 265 gcaaagctcaacgg 278 || ||||| ||||| Sbjct: 1081 gcgaagctgaacgg 1094 Score = 48.1 bits (24), Expect = 0.023 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand = Plus / Plus Query: 48 tgaanaccatgnaacactgnaccagctactcgatttgttcacttcaacccctgcttccag 107 |||| |||||| ||||||| ||||||| || ||| ||||||| |||||||||||||| || Sbjct: 896 tgaagaccatg-aacactg-accagctgcttgatctgttcacatcaacccctgcttcaag 953 Query: 108 aaa 110 ||| Sbjct: 954 aaa 956
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 83.8 bits (42), Expect = 4e-13 Identities = 105/126 (83%) Strand = Plus / Plus Query: 159 caaggggaaatcaggtcgcaagggcctcaagtcaatcctgagcgggctggacgagctgtg 218 |||||||||||| ||| | ||||| | ||||| || |||| || ||||||||||| || Sbjct: 3317917 caaggggaaatctggtgggaagggtttgaagtccattctgaatggtctggacgagctatg 3317976 Query: 219 ggaccagtcgcagtatgcggacgagtatgatatgaaccagttcctggcaaagctcaacgg 278 ||| ||||| |||||||| |||||||| ||| | ||||||||| |||| ||||||||||| Sbjct: 3317977 ggatcagtctcagtatgcagacgagtacgatctcaaccagttcttggcgaagctcaacgg 3318036 Query: 279 gtgaac 284 ||||| Sbjct: 3318037 ctgaac 3318042 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 cgctcgctcgcttgctcgctcgtg 326 |||||||||||| ||||||||||| Sbjct: 25204377 cgctcgctcgctcgctcgctcgtg 25204400
>dbj|AP004126.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ9003_G05 Length = 141860 Score = 83.8 bits (42), Expect = 4e-13 Identities = 105/126 (83%) Strand = Plus / Plus Query: 159 caaggggaaatcaggtcgcaagggcctcaagtcaatcctgagcgggctggacgagctgtg 218 |||||||||||| ||| | ||||| | ||||| || |||| || ||||||||||| || Sbjct: 66777 caaggggaaatctggtgggaagggtttgaagtccattctgaatggtctggacgagctatg 66836 Query: 219 ggaccagtcgcagtatgcggacgagtatgatatgaaccagttcctggcaaagctcaacgg 278 ||| ||||| |||||||| |||||||| ||| | ||||||||| |||| ||||||||||| Sbjct: 66837 ggatcagtctcagtatgcagacgagtacgatctcaaccagttcttggcgaagctcaacgg 66896 Query: 279 gtgaac 284 ||||| Sbjct: 66897 ctgaac 66902
>ref|XM_464189.1| Oryza sativa (japonica cultivar-group), mRNA Length = 6174 Score = 79.8 bits (40), Expect = 6e-12 Identities = 100/120 (83%) Strand = Plus / Plus Query: 159 caaggggaaatcaggtcgcaagggcctcaagtcaatcctgagcgggctggacgagctgtg 218 |||||||||||| ||| | ||||| | ||||| || |||| || ||||||||||| || Sbjct: 6051 caaggggaaatctggtgggaagggtttgaagtccattctgaatggtctggacgagctatg 6110 Query: 219 ggaccagtcgcagtatgcggacgagtatgatatgaaccagttcctggcaaagctcaacgg 278 ||| ||||| |||||||| |||||||| ||| | ||||||||| |||| ||||||||||| Sbjct: 6111 ggatcagtctcagtatgcagacgagtacgatctcaaccagttcttggcgaagctcaacgg 6170 Score = 61.9 bits (31), Expect = 2e-06 Identities = 111/134 (82%), Gaps = 3/134 (2%) Strand = Plus / Plus Query: 2 aggtgtcggttgccaacgccgtcataaattctgagnaatgctagcctgaanaccatgnaa 61 |||||||||| ||||| || ||||| ||| ||||| || || |||||||| || ||| || Sbjct: 5897 aggtgtcggtggccaatgcggtcatcaatgctgag-aacgccagcctgaagacaatg-aa 5954 Query: 62 cactgnaccagctactcgatttgttcacttcaacccctgcttccagaaaggcgtcggttc 121 ||||| |||| || || ||| |||| |||| || |||||||||||||| ||||| || | Sbjct: 5955 cactg-accaactgcttgatctgtttgcttcgacgcctgcttccagaaaagcgtctgtac 6013 Query: 122 tcccaagcagttcg 135 |||||||||||||| Sbjct: 6014 tcccaagcagttcg 6027
>gb|AC124437.4| Mus musculus BAC clone RP24-257N6 from chromosome 3, complete sequence Length = 149145 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 303 cgctcgctcgcttgctcgctcg 324 |||||||||||||||||||||| Sbjct: 117378 cgctcgctcgcttgctcgctcg 117357
>gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, complete sequence Length = 422021 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 302 ccgctcgctcgcttgctcgctc 323 |||||||||||||||||||||| Sbjct: 34773 ccgctcgctcgcttgctcgctc 34752
>ref|XM_499627.1| Yarrowia lipolytica CLIB122, YALI0A00759g predicted mRNA Length = 2958 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 195 cctgagcgggctggacgagctg 216 |||||||||||||||||||||| Sbjct: 1650 cctgagcgggctggacgagctg 1671
>emb|BX294024.1|NC20H10 Neurospora crassa DNA linkage group V Cosmid contig 20H10 Length = 96283 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 gctcgctcgcttgctcgctcgt 325 |||||||||||||||||||||| Sbjct: 95824 gctcgctcgcttgctcgctcgt 95845
>emb|CR388176.8| Zebrafish DNA sequence from clone DKEY-109D19 in linkage group 21, complete sequence Length = 159175 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 302 ccgctcgctcgcttgctcgctc 323 |||||||||||||||||||||| Sbjct: 89106 ccgctcgctcgcttgctcgctc 89085
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 299 tggccgctcgctcgcttgctcgctcg 324 |||||||||||||||| ||||||||| Sbjct: 3973122 tggccgctcgctcgctcgctcgctcg 3973097
>gb|AC115907.7| Mus musculus chromosome 3, clone RP24-476B18, complete sequence Length = 165131 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 303 cgctcgctcgcttgctcgctcg 324 |||||||||||||||||||||| Sbjct: 137722 cgctcgctcgcttgctcgctcg 137743
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 299 tggccgctcgctcgcttgctcgctcg 324 |||||||||||||||| ||||||||| Sbjct: 3975416 tggccgctcgctcgctcgctcgctcg 3975391
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 195 cctgagcgggctggacgagctg 216 |||||||||||||||||||||| Sbjct: 93193 cctgagcgggctggacgagctg 93214
>emb|AL807384.5| Mouse DNA sequence from clone RP23-18F9 on chromosome 2, complete sequence Length = 218815 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 302 ccgctcgctcgcttgctcgctcgtgt 327 ||||||||||||| |||||||||||| Sbjct: 175245 ccgctcgctcgctcgctcgctcgtgt 175220
>emb|AL669898.17| Mouse DNA sequence from clone RP23-6C3 on chromosome X, complete sequence Length = 220201 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 303 cgctcgctcgcttgctcgctcg 324 |||||||||||||||||||||| Sbjct: 4170 cgctcgctcgcttgctcgctcg 4191
>ref|NM_006769.2| Homo sapiens LIM domain only 4 (LMO4), mRNA Length = 2126 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 cgctcgctcgcttgctcgctc 323 ||||||||||||||||||||| Sbjct: 299 cgctcgctcgcttgctcgctc 279
>gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, complete sequence Length = 154765 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 cgctcgctcgcttgctcgctc 323 ||||||||||||||||||||| Sbjct: 133537 cgctcgctcgcttgctcgctc 133517
>gb|AC098157.8| Rattus norvegicus X BAC CH230-75N19 (Children's Hospital Oakland Research Institute) complete sequence Length = 233894 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 cgctcgctcgcttgctcgctc 323 ||||||||||||||||||||| Sbjct: 5136 cgctcgctcgcttgctcgctc 5116
>gb|AC158549.8| Mus musculus chromosome 19, clone RP24-216K4, complete sequence Length = 195500 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 gctcgctcgcttgctcgctcg 324 ||||||||||||||||||||| Sbjct: 134285 gctcgctcgcttgctcgctcg 134265
>gb|AC122373.4| Mus musculus BAC clone RP23-464E7 from chromosome 13, complete sequence Length = 192969 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 gctcgctcgcttgctcgctcg 324 ||||||||||||||||||||| Sbjct: 123059 gctcgctcgcttgctcgctcg 123039 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gctcgctcgcttgctcgctc 323 |||||||||||||||||||| Sbjct: 123047 gctcgctcgcttgctcgctc 123028
>gb|AC121722.4| Rattus norvegicus X BAC CH230-342C11 (Children's Hospital Oakland Research Institute) complete sequence Length = 179370 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 cgctcgctcgcttgctcgctc 323 ||||||||||||||||||||| Sbjct: 86546 cgctcgctcgcttgctcgctc 86526
>gb|AC154796.2| Mus musculus BAC clone RP24-490B17 from chromosome 17, complete sequence Length = 161075 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 303 cgctcgctcgcttgctcgctcgtgt 327 |||||||||||| |||||||||||| Sbjct: 95358 cgctcgctcgctcgctcgctcgtgt 95334
>gb|DQ093579.1| Mus musculus pannexin 2 (Panx2) mRNA, complete cds Length = 3031 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 gccgctcgctcgcttgctcgctcgt 325 |||||||||||||| |||||||||| Sbjct: 2803 gccgctcgctcgctcgctcgctcgt 2779
>gb|AC091559.7| Homo sapiens chromosome 8, clone RP11-60C8, complete sequence Length = 166357 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 cgctcgctcgcttgctcgctc 323 ||||||||||||||||||||| Sbjct: 35236 cgctcgctcgcttgctcgctc 35216
>gb|DP000058.1| Felis catus target 117 genomic scaffold Length = 458092 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 gctcgctcgcttgctcgctcg 324 ||||||||||||||||||||| Sbjct: 229554 gctcgctcgcttgctcgctcg 229534
>gb|AC092392.2| Homo sapiens chromosome 1 clone RP4-544H6, complete sequence Length = 98286 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 cgctcgctcgcttgctcgctc 323 ||||||||||||||||||||| Sbjct: 42119 cgctcgctcgcttgctcgctc 42099
>gb|AC113069.10| Mus musculus chromosome 15, clone RP23-269F24, complete sequence Length = 192825 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 gccgctcgctcgcttgctcgctcgt 325 |||||||||||||| |||||||||| Sbjct: 91682 gccgctcgctcgctcgctcgctcgt 91658
>gb|AF265255.1|AF265255 Polytrichum formosum clone F-12 microsatellite sequence Length = 190 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 cgctcgctcgcttgctcgctc 323 ||||||||||||||||||||| Sbjct: 174 cgctcgctcgcttgctcgctc 154
>emb|BX119987.6| Zebrafish DNA sequence from clone DKEY-242G16 in linkage group 19, complete sequence Length = 153687 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 gctcgctcgcttgctcgctcg 324 ||||||||||||||||||||| Sbjct: 23014 gctcgctcgcttgctcgctcg 23034
>gb|U24576.1|U24576 Homo sapiens breast tumor autoantigen (LMO4) mRNA, complete cds Length = 2080 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 cgctcgctcgcttgctcgctc 323 ||||||||||||||||||||| Sbjct: 299 cgctcgctcgcttgctcgctc 279
>emb|AL845305.5| Mouse DNA sequence from clone RP23-202K13 on chromosome 2, complete sequence Length = 200141 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 cgctcgctcgcttgctcgctc 323 ||||||||||||||||||||| Sbjct: 145746 cgctcgctcgcttgctcgctc 145766
>emb|AJ416379.1|MMU416379 Mus musculus ESM-1 gene Length = 9630 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 gctcgctcgcttgctcgctcg 324 ||||||||||||||||||||| Sbjct: 1810 gctcgctcgcttgctcgctcg 1790
>gb|U55816.1|RNU55816 Rattus norvegicus furosemide-sensitive K-Cl cotransporter (KCC2) mRNA, complete cds Length = 5566 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gccgctcgctcgcttgctcg 320 |||||||||||||||||||| Sbjct: 49 gccgctcgctcgcttgctcg 30
>gb|AC154049.1| Drosophila melanogaster clone BACR23M02, complete sequence Length = 126566 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 ggccgctcgctcgcttgctcgctc 323 |||| ||||||||||||||||||| Sbjct: 73231 ggccactcgctcgcttgctcgctc 73208
>gb|AC111134.10| Mus musculus chromosome 3, clone RP23-349J3, complete sequence Length = 223171 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 cgctcgctcgcttgctcgct 322 |||||||||||||||||||| Sbjct: 166747 cgctcgctcgcttgctcgct 166766
>gb|AC109498.10| Mus musculus chromosome 5, clone RP23-22K24, complete sequence Length = 218246 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 cgctcgctcgcttgctcgct 322 |||||||||||||||||||| Sbjct: 190644 cgctcgctcgcttgctcgct 190663
>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete sequence Length = 129440 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 gccgctcgctcgcttgctcgctcg 324 |||||||||||||| ||||||||| Sbjct: 74281 gccgctcgctcgctcgctcgctcg 74304
>gb|AC116595.4| Mus musculus BAC clone RP24-127G9 from chromosome 18, complete sequence Length = 158788 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 ctcgctcgcttgctcgctcg 324 |||||||||||||||||||| Sbjct: 46158 ctcgctcgcttgctcgctcg 46177
>gb|BC017614.1| Mus musculus RIKEN cDNA 2410081M15 gene, mRNA (cDNA clone MGC:27680 IMAGE:4912757), complete cds Length = 2131 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 gccgctcgctcgcttgctcgctcg 324 |||||||||||||| ||||||||| Sbjct: 108 gccgctcgctcgctcgctcgctcg 85
>ref|XM_658841.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6329.2), mRNA Length = 9672 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 caagggcctcaagtcaatcc 196 |||||||||||||||||||| Sbjct: 3895 caagggcctcaagtcaatcc 3914
>gb|AY542802.1| Cystoseira osmundacea biotype Elk Head 4 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 1243 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 ccgctcgctcgcttgctcgctcgt 325 ||||||||||||| |||||||||| Sbjct: 215 ccgctcgctcgctcgctcgctcgt 192
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 gccgctcgctcgcttgctcgctcg 324 |||||||||||||| ||||||||| Sbjct: 29242414 gccgctcgctcgctcgctcgctcg 29242437
>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete sequence Length = 139788 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 gccgctcgctcgcttgctcgctcg 324 |||||||||||||| ||||||||| Sbjct: 113586 gccgctcgctcgctcgctcgctcg 113563
>emb|AL160270.19| Human DNA sequence from clone RP11-296L22 on chromosome 9 Contains the 5' end of the C9orf25 gene for chromosome 9 open reading frame 25 (FLJ39031), the DNAI1 gene for dynein axonemal intermediate polypeptide 1, the CNTFR gene for ciliary neurotrophic factor receptor, a novel pseudogene, three novel genes, the 3' end of the DCTN3 gene for dynactin (p22) and five CpG islands, complete sequence Length = 199114 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gctcgctcgcttgctcgctc 323 |||||||||||||||||||| Sbjct: 173384 gctcgctcgcttgctcgctc 173365
>emb|AL139125.18| Human DNA sequence from clone RP5-1031D4 on chromosome 10 Contains the 5' end of the gene for a novel protein (KIAA1617), a novel gene and a CpG island, complete sequence Length = 124437 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 ctcgctcgcttgctcgctcg 324 |||||||||||||||||||| Sbjct: 43544 ctcgctcgcttgctcgctcg 43563
>gb|AC090571.5| Homo sapiens chromosome 8, clone RP11-313J18, complete sequence Length = 218627 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 cgctcgctcgcttgctcgct 322 |||||||||||||||||||| Sbjct: 15986 cgctcgctcgcttgctcgct 16005
>gb|AC159539.6| Mus musculus chromosome 5, clone RP23-228F6, complete sequence Length = 238599 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 gccgctcgctcgcttgctcgctcg 324 |||||||||||||| ||||||||| Sbjct: 80069 gccgctcgctcgctcgctcgctcg 80092
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 tcaacccctgcttccagaaaggcg 114 ||||||||||| |||||||||||| Sbjct: 845050 tcaacccctgcatccagaaaggcg 845027
>gb|AC153155.6| Mus musculus BAC clone RP23-25J23 from chromosome 18, complete sequence Length = 227880 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 ctcgctcgcttgctcgctcg 324 |||||||||||||||||||| Sbjct: 12654 ctcgctcgcttgctcgctcg 12635
>gb|AC020634.16| Homo sapiens 3 BAC RP11-9N20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181174 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gctcgctcgcttgctcgctc 323 |||||||||||||||||||| Sbjct: 108352 gctcgctcgcttgctcgctc 108333
>gb|AC096534.2| Homo sapiens chromosome 1 clone RP11-32I17, complete sequence Length = 195270 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gctcgctcgcttgctcgctc 323 |||||||||||||||||||| Sbjct: 175907 gctcgctcgcttgctcgctc 175888
>gb|AC103724.2| Homo sapiens chromosome 8, clone RP11-589C21, complete sequence Length = 162566 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 cgctcgctcgcttgctcgct 322 |||||||||||||||||||| Sbjct: 127020 cgctcgctcgcttgctcgct 127039
>ref|NM_134363.1| Rattus norvegicus solute carrier family 12, (potassium-chloride transporter) member 5 (Slc12a5), mRNA Length = 5566 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gccgctcgctcgcttgctcg 320 |||||||||||||||||||| Sbjct: 49 gccgctcgctcgcttgctcg 30
>gb|AC106505.4| Rattus norvegicus 1 BAC CH230-206C20 (Children's Hospital Oakland Research Institute) complete sequence Length = 199167 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 ctcgctcgcttgctcgctcg 324 |||||||||||||||||||| Sbjct: 8028 ctcgctcgcttgctcgctcg 8009
>gb|AC159966.5| Mus musculus chromosome 1, clone RP23-287P12, complete sequence Length = 208142 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gccgctcgctcgcttgctcg 320 |||||||||||||||||||| Sbjct: 118004 gccgctcgctcgcttgctcg 117985
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 gccgctcgctcgcttgctcgctcg 324 |||||||||||||| ||||||||| Sbjct: 29333842 gccgctcgctcgctcgctcgctcg 29333865
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1469H02 Length = 136602 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 cgctcgctcgcttgctcgctcgtg 326 |||||||||||| ||||||||||| Sbjct: 104770 cgctcgctcgctcgctcgctcgtg 104793
>emb|AJ328761.1|HSA328761 Homo sapiens genomic sequence surrounding NotI site, clone NR1-ND18C Length = 721 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gctcgctcgcttgctcgctc 323 |||||||||||||||||||| Sbjct: 64 gctcgctcgcttgctcgctc 83
>emb|AJ328760.1|HSA328760 Homo sapiens genomic sequence surrounding NotI site, clone NR1-NK13C Length = 783 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gctcgctcgcttgctcgctc 323 |||||||||||||||||||| Sbjct: 64 gctcgctcgcttgctcgctc 83
>emb|AJ328759.1|HSA328759 Homo sapiens genomic sequence surrounding NotI site, clone NR1-NO16C Length = 766 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gctcgctcgcttgctcgctc 323 |||||||||||||||||||| Sbjct: 64 gctcgctcgcttgctcgctc 83
>dbj|AK067068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093C21, full insert sequence Length = 1511 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 gccgctcgctcgcttgctcgctcg 324 |||||||||||||| ||||||||| Sbjct: 89 gccgctcgctcgctcgctcgctcg 112
>gb|AC084291.27| Homo sapiens 12 BAC RP11-465L8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125429 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 gccgctcgctcgcttgctcgctcg 324 |||| ||||||||||||||||||| Sbjct: 35820 gccgatcgctcgcttgctcgctcg 35843
>gb|AE003445.2| Drosophila melanogaster chromosome X, section 29 of 74 of the complete sequence Length = 334222 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 ggccgctcgctcgcttgctcgctc 323 |||| ||||||||||||||||||| Sbjct: 210084 ggccactcgctcgcttgctcgctc 210107
>emb|CR450786.7| Zebrafish DNA sequence from clone CH211-69J23 in linkage group 11, complete sequence Length = 169832 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gctcgctcgcttgctcgctc 323 |||||||||||||||||||| Sbjct: 72250 gctcgctcgcttgctcgctc 72231
>emb|AL807833.5| Mouse DNA sequence from clone RP23-371E13 on chromosome 4, complete sequence Length = 188795 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 cgctcgctcgcttgctcgctcgtg 326 |||||||||||| ||||||||||| Sbjct: 183590 cgctcgctcgctcgctcgctcgtg 183613
>emb|AL669950.11| Mouse DNA sequence from clone RP23-14C19 on chromosome X, complete sequence Length = 207256 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 ctcgctcgcttgctcgctcg 324 |||||||||||||||||||| Sbjct: 184981 ctcgctcgcttgctcgctcg 185000
>emb|AL607123.22| Mouse DNA sequence from clone RP23-391E6 on chromosome 4, complete sequence Length = 149369 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 gccgctcgctcgcttgctcgctcg 324 |||||||||||||| ||||||||| Sbjct: 126737 gccgctcgctcgctcgctcgctcg 126760 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,551,658 Number of Sequences: 3902068 Number of extensions: 2551658 Number of successful extensions: 38578 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38331 Number of HSP's gapped (non-prelim): 240 length of query: 417 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 395 effective length of database: 17,147,199,772 effective search space: 6773143909940 effective search space used: 6773143909940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
