| Clone Name | bags30j05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104375.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G04, full insert sequence Length = 1133 Score = 646 bits (326), Expect = 0.0 Identities = 492/547 (89%), Gaps = 3/547 (0%) Strand = Plus / Plus Query: 14 cggcgcccgccaactcctcctgcttccacccccgcgccgtcgcc---agctcgccctcct 70 ||||||| || |||||||||||||||||||| ||||||| |||| ||| ||||||| | Sbjct: 45 cggcgccggcgaactcctcctgcttccacccgcgcgccgccgccgccagcgcgccctcat 104 Query: 71 ctctcagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagacgaggctcggctcgt 130 |||||||||||||||||||||||||||||||| ||||||| ||||| | ||| ||||||| Sbjct: 105 ctctcagcgtgggcaccaaggtcttcgtcgggttgaaggcccagaccaagctaggctcgt 164 Query: 131 cagagtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccggagggtct 190 | ||||||||||||||||| |||| |||| |||||||||||||||||||||||||| ||| Sbjct: 165 cggagtcgtcgtgcccgaatgtcaccgccgggttctacaccgccgtcaaccggaggatct 224 Query: 191 cccttgggttgtcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggca 250 | || || || ||||||||||||||||||||||| |||||||||||||||||||| || | Sbjct: 225 ctctgggattatcaaacaagagggctaccagggcgcgcatttcaatgatgcctgttggta 284 Query: 251 caccacgggtaccttacagaacacctggtgaaggaacctggcagtggcttgacatatgga 310 |||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct: 285 caccacgggtgccttacagaacacctggtgaaggaacttggcaatggcttgatatatgga 344 Query: 311 atgctttatatcgtgaacggattatcttcattggggacaatattgatgaagaattcagta 370 ||||| ||||||| ||||| ||||||||||||||||||| ||| |||||||| || |||| Sbjct: 345 atgctctatatcgcgaacgaattatcttcattggggacagtatagatgaagagtttagta 404 Query: 371 accaagtactggcaagcatgctgtatcttgacagtgtcgacgacacaaagaagattcttc 430 |||||||| |||| |||||| ||||||||||||| || || |||| || |||||||||| Sbjct: 405 accaagtattggcgagcatgttgtatcttgacagcgttgataacactaaaaagattcttc 464 Query: 431 tatacatcaacggtccaggaggagatcttacaccatgcatggcgttatatgataccatgc 490 ||||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 465 tatacattaatggtccaggaggagatcttacaccatgcatggcattatatgatacaatgc 524 Query: 491 taagcctaaagagtccaattggtacccattgnctgggctttgcattcaacttggcaggat 550 |||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 525 taagcctaaaaagtcctattggtactcattgcctgggctttgcattcaacttggcaggat 584 Query: 551 tcattct 557 | ||||| Sbjct: 585 ttattct 591
>dbj|AK099815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L17, full insert sequence Length = 1243 Score = 646 bits (326), Expect = 0.0 Identities = 492/547 (89%), Gaps = 3/547 (0%) Strand = Plus / Plus Query: 14 cggcgcccgccaactcctcctgcttccacccccgcgccgtcgcc---agctcgccctcct 70 ||||||| || |||||||||||||||||||| ||||||| |||| ||| ||||||| | Sbjct: 63 cggcgccggcgaactcctcctgcttccacccgcgcgccgccgccgccagcgcgccctcat 122 Query: 71 ctctcagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagacgaggctcggctcgt 130 |||||||||||||||||||||||||||||||| ||||||| ||||| | ||| ||||||| Sbjct: 123 ctctcagcgtgggcaccaaggtcttcgtcgggttgaaggcccagaccaagctaggctcgt 182 Query: 131 cagagtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccggagggtct 190 | ||||||||||||||||| |||| |||| |||||||||||||||||||||||||| ||| Sbjct: 183 cggagtcgtcgtgcccgaatgtcaccgccgggttctacaccgccgtcaaccggaggatct 242 Query: 191 cccttgggttgtcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggca 250 | || || || ||||||||||||||||||||||| |||||||||||||||||||| || | Sbjct: 243 ctctgggattatcaaacaagagggctaccagggcgcgcatttcaatgatgcctgttggta 302 Query: 251 caccacgggtaccttacagaacacctggtgaaggaacctggcagtggcttgacatatgga 310 |||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct: 303 caccacgggtgccttacagaacacctggtgaaggaacttggcaatggcttgatatatgga 362 Query: 311 atgctttatatcgtgaacggattatcttcattggggacaatattgatgaagaattcagta 370 ||||| ||||||| ||||| ||||||||||||||||||| ||| |||||||| || |||| Sbjct: 363 atgctctatatcgcgaacgaattatcttcattggggacagtatagatgaagagtttagta 422 Query: 371 accaagtactggcaagcatgctgtatcttgacagtgtcgacgacacaaagaagattcttc 430 |||||||| |||| |||||| ||||||||||||| || || |||| || |||||||||| Sbjct: 423 accaagtattggcgagcatgttgtatcttgacagcgttgataacactaaaaagattcttc 482 Query: 431 tatacatcaacggtccaggaggagatcttacaccatgcatggcgttatatgataccatgc 490 ||||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 483 tatacattaatggtccaggaggagatcttacaccatgcatggcattatatgatacaatgc 542 Query: 491 taagcctaaagagtccaattggtacccattgnctgggctttgcattcaacttggcaggat 550 |||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 543 taagcctaaaaagtcctattggtactcattgcctgggctttgcattcaacttggcaggat 602 Query: 551 tcattct 557 | ||||| Sbjct: 603 ttattct 609
>dbj|AK061385.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A01, full insert sequence Length = 1133 Score = 646 bits (326), Expect = 0.0 Identities = 492/547 (89%), Gaps = 3/547 (0%) Strand = Plus / Plus Query: 14 cggcgcccgccaactcctcctgcttccacccccgcgccgtcgcc---agctcgccctcct 70 ||||||| || |||||||||||||||||||| ||||||| |||| ||| ||||||| | Sbjct: 45 cggcgccggcgaactcctcctgcttccacccgcgcgccgccgccgccagcgcgccctcat 104 Query: 71 ctctcagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagacgaggctcggctcgt 130 |||||||||||||||||||||||||||||||| ||||||| ||||| | ||| ||||||| Sbjct: 105 ctctcagcgtgggcaccaaggtcttcgtcgggttgaaggcccagaccaagctaggctcgt 164 Query: 131 cagagtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccggagggtct 190 | ||||||||||||||||| |||| |||| |||||||||||||||||||||||||| ||| Sbjct: 165 cggagtcgtcgtgcccgaatgtcaccgccgggttctacaccgccgtcaaccggaggatct 224 Query: 191 cccttgggttgtcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggca 250 | || || || ||||||||||||||||||||||| |||||||||||||||||||| || | Sbjct: 225 ctctgggattatcaaacaagagggctaccagggcgcgcatttcaatgatgcctgttggta 284 Query: 251 caccacgggtaccttacagaacacctggtgaaggaacctggcagtggcttgacatatgga 310 |||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct: 285 caccacgggtgccttacagaacacctggtgaaggaacttggcaatggcttgatatatgga 344 Query: 311 atgctttatatcgtgaacggattatcttcattggggacaatattgatgaagaattcagta 370 ||||| ||||||| ||||| ||||||||||||||||||| ||| |||||||| || |||| Sbjct: 345 atgctctatatcgcgaacgaattatcttcattggggacagtatagatgaagagtttagta 404 Query: 371 accaagtactggcaagcatgctgtatcttgacagtgtcgacgacacaaagaagattcttc 430 |||||||| |||| |||||| ||||||||||||| || || |||| || |||||||||| Sbjct: 405 accaagtattggcgagcatgttgtatcttgacagcgttgataacactaaaaagattcttc 464 Query: 431 tatacatcaacggtccaggaggagatcttacaccatgcatggcgttatatgataccatgc 490 ||||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 465 tatacattaatggtccaggaggagatcttacaccatgcatggcattatatgatacaatgc 524 Query: 491 taagcctaaagagtccaattggtacccattgnctgggctttgcattcaacttggcaggat 550 |||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 525 taagcctaaaaagtcctattggtactcattgcctgggctttgcattcaacttggcaggat 584 Query: 551 tcattct 557 | ||||| Sbjct: 585 ttattct 591
>gb|BT017217.1| Zea mays clone EL01N0372E04.c mRNA sequence Length = 1252 Score = 400 bits (202), Expect = e-108 Identities = 456/541 (84%) Strand = Plus / Plus Query: 14 cggcgcccgccaactcctcctgcttccacccccgcgccgtcgccagctcgccctcctctc 73 ||||||| |||| |||||| ||||||||||| ||||| ||||||| |||| || |||| Sbjct: 51 cggcgccggccagctcctcatgcttccacccacgcgcgaccgccagcccgccgtcttctc 110 Query: 74 tcagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagacgaggctcggctcgtcag 133 ||||||| ||||||||||||||||||||||| | ||||||||| | |||||| ||||| | Sbjct: 111 tcagcgtcggcaccaaggtcttcgtcgggctcagggcgcagaccaagctcggttcgtcgg 170 Query: 134 agtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccggagggtctccc 193 ||||||| |||||||| |||| ||| ||||| |||| || ||||||||||| |||| | Sbjct: 171 agtcgtcatgcccgaatgtcagcgctgggttccacactgcggtcaaccggagaatctctc 230 Query: 194 ttgggttgtcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggcacac 253 | ||||||| || |||| ||| ||||| || ||||| || ||||||||| | || || | Sbjct: 231 tcaggttgtccaaaaagaaggcgaccagagcccgcatctcgatgatgcctattggtactc 290 Query: 254 cacgggtaccttacagaacacctggtgaaggaacctggcagtggcttgacatatggaatg 313 |||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 291 cacgtgtgccttaccgaacacctggtgaaggaacctggcaatggcttgacatatggaacg 350 Query: 314 ctttatatcgtgaacggattatcttcattggggacaatattgatgaagaattcagtaacc 373 || | || ||||| |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 351 ctctgtaccgtgagcggattatcttcattggggacaatatagatgaagaattcagcaacc 410 Query: 374 aagtactggcaagcatgctgtatcttgacagtgtcgacgacacaaagaagattcttctat 433 |||| ||||||||||||| ||||||||||| | || | | || ||||| | |||| Sbjct: 411 aagtgttggcaagcatgctctatcttgacagcattgataattccaaaaagataatgctat 470 Query: 434 acatcaacggtccaggaggagatcttacaccatgcatggcgttatatgataccatgctaa 493 |||| || || ||||||||||||||||| || || ||||| |||||||||||||||||| Sbjct: 471 acattaatggaccaggaggagatcttactccgtgtatggcactatatgataccatgctaa 530 Query: 494 gcctaaagagtccaattggtacccattgnctgggctttgcattcaacttggcaggattca 553 | ||||| ||||| ||||| || || || ||||||||||||||||| |||||||||||| Sbjct: 531 gtctaaaaagtcctattggcactcactgcttgggctttgcattcaacctggcaggattca 590 Query: 554 t 554 | Sbjct: 591 t 591
>gb|AY105157.1| Zea mays PCO115092 mRNA sequence Length = 481 Score = 331 bits (167), Expect = 1e-87 Identities = 335/391 (85%) Strand = Plus / Plus Query: 14 cggcgcccgccaactcctcctgcttccacccccgcgccgtcgccagctcgccctcctctc 73 ||||||| |||| |||||| ||||||||||| ||||| ||||||| |||| || |||| Sbjct: 54 cggcgccggccagctcctcatgcttccacccacgcgcgaccgccagcccgccgtcttctc 113 Query: 74 tcagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagacgaggctcggctcgtcag 133 ||||||| ||||||||||||||||||||||| | ||||||||| | |||||| ||||| | Sbjct: 114 tcagcgtcggcaccaaggtcttcgtcgggctcagggcgcagaccaagctcggttcgtcgg 173 Query: 134 agtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccggagggtctccc 193 ||||||| |||||||| |||| ||| ||||| |||| || ||||||||||| |||| | Sbjct: 174 agtcgtcatgcccgaatgtcagcgctgggttccacactgcggtcaaccggagaatctctc 233 Query: 194 ttgggttgtcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggcacac 253 | ||||||| || |||| ||| ||||| || ||||| || ||||||||| | || || | Sbjct: 234 tcaggttgtccaaaaagaaggcgaccagagcccgcatctcgatgatgcctattggtactc 293 Query: 254 cacgggtaccttacagaacacctggtgaaggaacctggcagtggcttgacatatggaatg 313 |||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 294 cacgtgtgccttaccgaacacctggtgaaggaacctggcaatggcttgacatatggaacg 353 Query: 314 ctttatatcgtgaacggattatcttcattggggacaatattgatgaagaattcagtaacc 373 || | || ||||| |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct: 354 ctctgtaccgtgagcggattatcttcattggggacaatatagatgaagaattcagcaacc 413 Query: 374 aagtactggcaagcatgctgtatcttgacag 404 |||| ||||||||||||| ||||||||||| Sbjct: 414 aagtgttggcaagcatgctctatcttgacag 444
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 170 bits (86), Expect = 3e-39 Identities = 107/114 (93%) Strand = Plus / Plus Query: 202 tcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggcacaccacgggta 261 ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| Sbjct: 1949403 tcaaacaagagggctaccagggcgcgcatttcaatgatgcctgttggtacaccacgggtg 1949462 Query: 262 ccttacagaacacctggtgaaggaacctggcagtggcttgacatatggaatgct 315 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 1949463 ccttacagaacacctggtgaaggaacttggcaatggcttgatatatggaatgct 1949516 Score = 147 bits (74), Expect = 5e-32 Identities = 94/101 (93%) Strand = Plus / Plus Query: 457 cttacaccatgcatggcgttatatgataccatgctaagcctaaagagtccaattggtacc 516 ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 1951074 cttacaccatgcatggcattatatgatacaatgctaagcctaaaaagtcctattggtact 1951133 Query: 517 cattgnctgggctttgcattcaacttggcaggattcattct 557 ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 1951134 cattgcctgggctttgcattcaacttggcaggatttattct 1951174 Score = 139 bits (70), Expect = 1e-29 Identities = 121/138 (87%) Strand = Plus / Plus Query: 319 tatcgtgaacggattatcttcattggggacaatattgatgaagaattcagtaaccaagta 378 ||||| ||||| ||||||||||||||||||| ||| |||||||| || |||||||||||| Sbjct: 1949630 tatcgcgaacgaattatcttcattggggacagtatagatgaagagtttagtaaccaagta 1949689 Query: 379 ctggcaagcatgctgtatcttgacagtgtcgacgacacaaagaagattcttctatacatc 438 |||| |||||| ||||||||||||| || || |||| || ||||||||||||||||| Sbjct: 1949690 ttggcgagcatgttgtatcttgacagcgttgataacactaaaaagattcttctatacatt 1949749 Query: 439 aacggtccaggaggagat 456 || ||||||||||||||| Sbjct: 1949750 aatggtccaggaggagat 1949767 Score = 95.6 bits (48), Expect = 1e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 124 ggctcgtcagagtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccgg 183 |||||||| ||||||||||||||||| |||| |||| ||||||||||||||||||||||| Sbjct: 1948856 ggctcgtcggagtcgtcgtgcccgaatgtcaccgccgggttctacaccgccgtcaaccgg 1948915 Query: 184 agggtctc 191 ||| |||| Sbjct: 1948916 aggatctc 1948923 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 75 cagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagac 116 |||||||||||||||||||||||||||| ||||||| ||||| Sbjct: 1948699 cagcgtgggcaccaaggtcttcgtcgggttgaaggcccagac 1948740 Score = 58.0 bits (29), Expect = 3e-05 Identities = 58/67 (86%), Gaps = 3/67 (4%) Strand = Plus / Plus Query: 14 cggcgcccgccaactcctcctgcttccacccccg---cgccgtcgccagctcgccctcct 70 ||||||| || |||||||||||||||||||| || ||||| ||||||| ||||||| | Sbjct: 1948513 cggcgccggcgaactcctcctgcttccacccgcgcgccgccgccgccagcgcgccctcat 1948572 Query: 71 ctctcag 77 ||||||| Sbjct: 1948573 ctctcag 1948579
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548D03 Length = 156709 Score = 170 bits (86), Expect = 3e-39 Identities = 107/114 (93%) Strand = Plus / Plus Query: 202 tcaaacaagagggctaccagggcacgcatttcaatgatgcctgtcggcacaccacgggta 261 ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| Sbjct: 78183 tcaaacaagagggctaccagggcgcgcatttcaatgatgcctgttggtacaccacgggtg 78242 Query: 262 ccttacagaacacctggtgaaggaacctggcagtggcttgacatatggaatgct 315 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 78243 ccttacagaacacctggtgaaggaacttggcaatggcttgatatatggaatgct 78296 Score = 147 bits (74), Expect = 5e-32 Identities = 94/101 (93%) Strand = Plus / Plus Query: 457 cttacaccatgcatggcgttatatgataccatgctaagcctaaagagtccaattggtacc 516 ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 79854 cttacaccatgcatggcattatatgatacaatgctaagcctaaaaagtcctattggtact 79913 Query: 517 cattgnctgggctttgcattcaacttggcaggattcattct 557 ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 79914 cattgcctgggctttgcattcaacttggcaggatttattct 79954 Score = 139 bits (70), Expect = 1e-29 Identities = 121/138 (87%) Strand = Plus / Plus Query: 319 tatcgtgaacggattatcttcattggggacaatattgatgaagaattcagtaaccaagta 378 ||||| ||||| ||||||||||||||||||| ||| |||||||| || |||||||||||| Sbjct: 78410 tatcgcgaacgaattatcttcattggggacagtatagatgaagagtttagtaaccaagta 78469 Query: 379 ctggcaagcatgctgtatcttgacagtgtcgacgacacaaagaagattcttctatacatc 438 |||| |||||| ||||||||||||| || || |||| || ||||||||||||||||| Sbjct: 78470 ttggcgagcatgttgtatcttgacagcgttgataacactaaaaagattcttctatacatt 78529 Query: 439 aacggtccaggaggagat 456 || ||||||||||||||| Sbjct: 78530 aatggtccaggaggagat 78547 Score = 95.6 bits (48), Expect = 1e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 124 ggctcgtcagagtcgtcgtgcccgaacgtcaacgcccggttctacaccgccgtcaaccgg 183 |||||||| ||||||||||||||||| |||| |||| ||||||||||||||||||||||| Sbjct: 77636 ggctcgtcggagtcgtcgtgcccgaatgtcaccgccgggttctacaccgccgtcaaccgg 77695 Query: 184 agggtctc 191 ||| |||| Sbjct: 77696 aggatctc 77703 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 75 cagcgtgggcaccaaggtcttcgtcgggctgaaggcgcagac 116 |||||||||||||||||||||||||||| ||||||| ||||| Sbjct: 77479 cagcgtgggcaccaaggtcttcgtcgggttgaaggcccagac 77520 Score = 58.0 bits (29), Expect = 3e-05 Identities = 58/67 (86%), Gaps = 3/67 (4%) Strand = Plus / Plus Query: 14 cggcgcccgccaactcctcctgcttccacccccg---cgccgtcgccagctcgccctcct 70 ||||||| || |||||||||||||||||||| || ||||| ||||||| ||||||| | Sbjct: 77293 cggcgccggcgaactcctcctgcttccacccgcgcgccgccgccgccagcgcgccctcat 77352 Query: 71 ctctcag 77 ||||||| Sbjct: 77353 ctctcag 77359
>gb|AY105451.1| Zea mays PCO122767 mRNA sequence Length = 709 Score = 125 bits (63), Expect = 2e-25 Identities = 161/194 (82%) Strand = Plus / Plus Query: 361 gaattcagtaaccaagtactggcaagcatgctgtatcttgacagtgtcgacgacacaaag 420 |||||||| |||||||| ||||||||||||| ||||||||||| | || | | || Sbjct: 11 gaattcagcaaccaagtgttggcaagcatgctctatcttgacagcattgataattccaaa 70 Query: 421 aagattcttctatacatcaacggtccaggaggagatcttacaccatgcatggcgttatat 480 ||||| | |||||||| || || ||||||||||||||||| || || ||||| ||||| Sbjct: 71 aagataatgctatacattaatggaccaggaggagatcttactccgtgtatggcactatat 130 Query: 481 gataccatgctaagcctaaagagtccaattggtacccattgnctgggctttgcattcaac 540 |||||||||||||| ||||| ||||| ||||| || || || ||||||||||||||||| Sbjct: 131 gataccatgctaagtctaaaaagtcctattggcactcactgcttgggctttgcattcaac 190 Query: 541 ttggcaggattcat 554 ||||||||||||| Sbjct: 191 ctggcaggattcat 204
>gb|AC152498.11| Medicago truncatula clone mth2-38m20, complete sequence Length = 127132 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 268 agaacacctggtgaaggaacctggcagtggcttgacatatggaatgc 314 |||||||||||||||||||| ||||| ||| |||| |||||||||| Sbjct: 37162 agaacacctggtgaaggaacttggcaatgggttgatttatggaatgc 37116 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 355 gatgaagaattcagtaaccaagtactggcaagcatgctgtatcttgacagtgt 407 ||||||||||| || || ||| || |||||| ||||||||||||||||||| Sbjct: 36892 gatgaagaattaagcaatcaaatattggcaactttgctgtatcttgacagtgt 36840
>ref|NM_193865.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 225 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgccagctcgccctcctctc 73 |||||||||||||||||||| Sbjct: 192 cgccagctcgccctcctctc 173
>emb|AL109612.7|HSJ1018A4 Human DNA sequence from clone RP5-1018A4 on chromosome 6q12-13 Contains part of a novel gene, part of the gene for a novel EGF-like domain containing protein and a novel gene, complete sequence Length = 106273 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 aaagaagattcttctataca 436 |||||||||||||||||||| Sbjct: 93371 aaagaagattcttctataca 93390
>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster Length = 89976 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 cgcgccgtcgccagctcgccctcc 69 ||||||||||||||||| |||||| Sbjct: 79820 cgcgccgtcgccagctccccctcc 79797
>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of glycopeptide antibiotic teicoplanin Length = 89713 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 cgcgccgtcgccagctcgccctcc 69 ||||||||||||||||| |||||| Sbjct: 81638 cgcgccgtcgccagctccccctcc 81615
>emb|AJ252202.1|DME252202 Drosophila melanogaster D-COQ7 gene for putative COQ7 isologue, exons 1-3 Length = 2586 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 gagggctaccagggcacgca 229 |||||||||||||||||||| Sbjct: 2457 gagggctaccagggcacgca 2438
>emb|CR382291.11| Zebrafish DNA sequence from clone CH211-245G10, complete sequence Length = 159807 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 agtggcttgacatatggaat 312 |||||||||||||||||||| Sbjct: 82648 agtggcttgacatatggaat 82629
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cgcgccgtcgccagctcgcc 65 |||||||||||||||||||| Sbjct: 1441102 cgcgccgtcgccagctcgcc 1441083
>gb|AC023722.4| Drosophila melanogaster X BAC RP98-48O24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 191590 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 gagggctaccagggcacgca 229 |||||||||||||||||||| Sbjct: 87446 gagggctaccagggcacgca 87427
>ref|NM_132121.2| Drosophila melanogaster shifted CG3135-RA (shf), mRNA Length = 1803 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 gagggctaccagggcacgca 229 |||||||||||||||||||| Sbjct: 1263 gagggctaccagggcacgca 1282
>gb|AY051622.1| Drosophila melanogaster GH27042 full length cDNA Length = 1802 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 gagggctaccagggcacgca 229 |||||||||||||||||||| Sbjct: 1263 gagggctaccagggcacgca 1282
>tpg|BK000323.1| TPA: TPA_exp: Oryza sativa (indica cultivar-group) transposon Rim2-M44, complete sequence Length = 2086 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgccagctcgccctcctctc 73 |||||||||||||||||||| Sbjct: 1490 cgccagctcgccctcctctc 1471
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 caactcctcctgcttccacc 43 |||||||||||||||||||| Sbjct: 419440 caactcctcctgcttccacc 419459
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgccagctcgccctcctctc 73 |||||||||||||||||||| Sbjct: 15430557 cgccagctcgccctcctctc 15430576
>gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complete sequence Length = 164706 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 532 gcattcaacttggcaggatt 551 |||||||||||||||||||| Sbjct: 159795 gcattcaacttggcaggatt 159814
>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017C12 Length = 135356 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 caactcctcctgcttccacc 43 |||||||||||||||||||| Sbjct: 15681 caactcctcctgcttccacc 15700
>dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1045D11 Length = 142320 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgccagctcgccctcctctc 73 |||||||||||||||||||| Sbjct: 108098 cgccagctcgccctcctctc 108117
>gb|AE003438.3| Drosophila melanogaster chromosome X, section 22 of 74 of the complete sequence Length = 299943 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 gagggctaccagggcacgca 229 |||||||||||||||||||| Sbjct: 233437 gagggctaccagggcacgca 233418
>emb|AL672005.7| Mouse DNA sequence from clone RP23-401A9 on chromosome X, complete sequence Length = 123180 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 caactcctcctgcttccacc 43 |||||||||||||||||||| Sbjct: 39066 caactcctcctgcttccacc 39085 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,774,131 Number of Sequences: 3902068 Number of extensions: 3774131 Number of successful extensions: 72119 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71943 Number of HSP's gapped (non-prelim): 173 length of query: 557 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 534 effective length of database: 17,143,297,704 effective search space: 9154520973936 effective search space used: 9154520973936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)