ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags30j03 |
|---|---|
| Clone Library Name | barley_pub |
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 165 bits (418), Expect = 2e-41 Identities = 71/83 (85%), Positives = 75/83 (90%) Frame = +3 Query: 3 CYVQFPQXFDSIDRHDRYANKNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPK 182 CYVQFPQ FD IDRHDRY+N+NVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYG+DAPK Sbjct: 591 CYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGFDAPK 650 Query: 183 TKKPPSRTCNCWPKWCVCCFCFG 251 KKPP +TCNCWPKW CC C G Sbjct: 651 KKKPPGKTCNCWPKW--CCLCCG 671
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 165 bits (417), Expect = 3e-41 Identities = 71/83 (85%), Positives = 75/83 (90%) Frame = +3 Query: 3 CYVQFPQXFDSIDRHDRYANKNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPK 182 CYVQFPQ FD IDRHDRY+N+NVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYG+DAPK Sbjct: 596 CYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGFDAPK 655 Query: 183 TKKPPSRTCNCWPKWCVCCFCFG 251 K+PP RTCNCWPKW CC C G Sbjct: 656 KKQPPGRTCNCWPKW--CCLCCG 676
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 163 bits (412), Expect = 1e-40 Identities = 68/80 (85%), Positives = 74/80 (92%) Frame = +3 Query: 3 CYVQFPQXFDSIDRHDRYANKNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPK 182 CYVQFPQ FD IDRHDRY+N+NVVFFDINMKGLDG+QGPIYVGTGCVFRRQALYG+DAPK Sbjct: 590 CYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRQALYGFDAPK 649 Query: 183 TKKPPSRTCNCWPKWCVCCF 242 KK P +TCNCWPKWC+ CF Sbjct: 650 KKKGPRKTCNCWPKWCLLCF 669
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 152 bits (383), Expect = 3e-37 Identities = 64/79 (81%), Positives = 70/79 (88%) Frame = +3 Query: 3 CYVQFPQXFDSIDRHDRYANKNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPK 182 CYVQFPQ FD ID+ DRY+N+NVVFFDINMKGLDG+QGPIYVGTGCVFRRQALYG+DAPK Sbjct: 578 CYVQFPQRFDGIDKSDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRQALYGFDAPK 637 Query: 183 TKKPPSRTCNCWPKWCVCC 239 KK TCNCWPKWC+ C Sbjct: 638 KKKTKRMTCNCWPKWCLFC 656
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 138 bits (348), Expect = 3e-33 Identities = 58/83 (69%), Positives = 68/83 (81%) Frame = +3 Query: 3 CYVQFPQXFDSIDRHDRYANKNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPK 182 CYVQFPQ FD ID +DRYAN+N+VFFDINM+GLDGIQGP+YVGTGCVF R ALYGY+ P Sbjct: 529 CYVQFPQRFDGIDLNDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRPALYGYEPPV 588 Query: 183 TKKPPSRTCNCWPKWCVCCFCFG 251 ++K TC+CWP W +CC C G Sbjct: 589 SEKRKKMTCDCWPSW-ICCCCGG 610
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 126 bits (317), Expect = 1e-29 Identities = 58/83 (69%), Positives = 63/83 (75%) Frame = +3 Query: 3 CYVQFPQXFDSIDRHDRYANKNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPK 182 CYVQFPQ FD ID +DRYAN+N VFFDINMKGLDGIQGP+YVGTGCVF+RQALYGY+ PK Sbjct: 552 CYVQFPQRFDGIDTNDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFKRQALYGYEPPK 611 Query: 183 TKKPPSRTCNCWPKWCVCCFCFG 251 K P C CC CFG Sbjct: 612 GPKRPKMIS------CGCCPCFG 628
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 114 bits (286), Expect = 4e-26 Identities = 50/63 (79%), Positives = 55/63 (87%) Frame = +3 Query: 3 CYVQFPQXFDSIDRHDRYANKNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPK 182 CYVQFPQ FD ID HDRYAN+N+VFFDINMKGLDGIQGP+YVGTGC F RQALYGYD Sbjct: 589 CYVQFPQRFDGIDLHDRYANRNIVFFDINMKGLDGIQGPVYVGTGCCFNRQALYGYDPVL 648 Query: 183 TKK 191 T++ Sbjct: 649 TEE 651
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 112 bits (280), Expect = 2e-25 Identities = 49/63 (77%), Positives = 54/63 (85%) Frame = +3 Query: 3 CYVQFPQXFDSIDRHDRYANKNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPK 182 CYVQFPQ FD ID HDRYAN+N VFFDIN+KGLDGIQGP+YVGTGC F RQALYGYD Sbjct: 576 CYVQFPQRFDGIDLHDRYANRNTVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVL 635 Query: 183 TKK 191 T++ Sbjct: 636 TEE 638
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 112 bits (279), Expect = 3e-25 Identities = 50/67 (74%), Positives = 57/67 (85%), Gaps = 3/67 (4%) Frame = +3 Query: 3 CYVQFPQXFDSIDRHDRYANKNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAP- 179 CYVQFPQ FD ID++DRYAN+N VFFDIN++GLDGIQGP+YVGTGCVF R ALYGY+ P Sbjct: 573 CYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPI 632 Query: 180 --KTKKP 194 K KKP Sbjct: 633 KVKHKKP 639
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 111 bits (278), Expect = 4e-25 Identities = 51/81 (62%), Positives = 61/81 (75%), Gaps = 2/81 (2%) Frame = +3 Query: 3 CYVQFPQXFDSIDRHDRYANKNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPK 182 C+VQFPQ FD ID+ DRYAN+N+VFFD+NM+GLDGIQGP+YVGTG VFRRQALYGY P Sbjct: 498 CFVQFPQRFDGIDKSDRYANRNIVFFDVNMRGLDGIQGPVYVGTGTVFRRQALYGYSPPS 557 Query: 183 TKK--PPSRTCNCWPKWCVCC 239 + P S + +C CC Sbjct: 558 KPRILPQSSSSSC------CC 572
>SPN7_SCHPO (O60165) Septin homolog spn7| Length = 428 Score = 31.6 bits (70), Expect = 0.50 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = -3 Query: 185 CFGSIITVQCLPSE---DTSSTNIDGALNTIQTFHVDIKEDDVLVGISIVTVNG 33 C S+ + Q L +E D +ID L I+ F+ DI ED+ V ++++ VNG Sbjct: 34 CINSLCSKQILEAETEIDPLKAHIDRILE-IREFNADILEDEFHVDLTVIEVNG 86
>SAMP_MOUSE (P12246) Serum amyloid P-component precursor (SAP)| Length = 224 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = -3 Query: 248 EAETAHTPLWPAVASP*R-WLLCFGSIITVQCLPSEDTSSTNIDGALNTIQTFHVDIKED 72 E+ET H L P + P + + LCF + + S+ S ++ G N + + + E Sbjct: 34 ESETDHVKLIPHLEKPLQNFTLCFRTYSDLS--RSQSLFSYSVKGRDNELLIYKEKVGEY 91 Query: 71 DVLVGISIVTVNGVE 27 + +G S VTV G+E Sbjct: 92 SLYIGQSKVTVRGME 106
>PGPSA_DROME (Q9VYX7) Peptidoglycan-recognition protein-SA precursor (EC| 3.4.17.13) (Protein semmelweis) Length = 203 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +3 Query: 54 YANKNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDA 176 Y + F DI+ L G G +Y GTG R YGY+A Sbjct: 90 YHQNELDFNDISYNFLIGNDGIVYEGTGWGLRGAHTYGYNA 130
>CODY_STAAW (P63845) GTP-sensing transcriptional pleiotropic repressor codY| Length = 257 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -3 Query: 92 HVDIKEDDVLVGISIVTVNGVEXLRELH 9 H D E+D+++G TV G+E LRE H Sbjct: 132 HDDFNENDLVLGEYAATVIGMEILREKH 159
>CODY_STAAS (Q6G9V8) GTP-sensing transcriptional pleiotropic repressor codY| Length = 257 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -3 Query: 92 HVDIKEDDVLVGISIVTVNGVEXLRELH 9 H D E+D+++G TV G+E LRE H Sbjct: 132 HDDFNENDLVLGEYAATVIGMEILREKH 159
>CODY_STAAR (Q6GHI0) GTP-sensing transcriptional pleiotropic repressor codY| Length = 257 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -3 Query: 92 HVDIKEDDVLVGISIVTVNGVEXLRELH 9 H D E+D+++G TV G+E LRE H Sbjct: 132 HDDFNENDLVLGEYAATVIGMEILREKH 159
>CODY_STAAN (P63844) GTP-sensing transcriptional pleiotropic repressor codY| Length = 257 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -3 Query: 92 HVDIKEDDVLVGISIVTVNGVEXLRELH 9 H D E+D+++G TV G+E LRE H Sbjct: 132 HDDFNENDLVLGEYAATVIGMEILREKH 159
>CODY_STAAM (P63843) GTP-sensing transcriptional pleiotropic repressor codY| Length = 257 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -3 Query: 92 HVDIKEDDVLVGISIVTVNGVEXLRELH 9 H D E+D+++G TV G+E LRE H Sbjct: 132 HDDFNENDLVLGEYAATVIGMEILREKH 159
>CODY_STAAC (Q5HGH7) GTP-sensing transcriptional pleiotropic repressor codY| Length = 257 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -3 Query: 92 HVDIKEDDVLVGISIVTVNGVEXLRELH 9 H D E+D+++G TV G+E LRE H Sbjct: 132 HDDFNENDLVLGEYAATVIGMEILREKH 159
>UPPS_OCEIH (Q8EQU9) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP| synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) Length = 252 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +1 Query: 118 PSMLVLDVSSEGRHCTVMMLPKQRSHRQGLATAGQSGVCAVSASV 252 PS + + + GR LP+ HR+G++T + AV+A+V Sbjct: 24 PSHIAIIMDGNGRWAQKRGLPRIAGHREGVSTVNRIVKTAVNANV 68
>RGS17_MOUSE (Q9QZB0) Regulator of G-protein signaling 17 (RGS17) (Regulator of| Gz-selective protein signaling 2) Length = 210 Score = 28.1 bits (61), Expect = 5.5 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 174 APKTKKPPSRTCNCWPKWCVCCFC 245 AP ++P + C C WC CC C Sbjct: 18 APGNQRPNNTCCFC---WCCCCSC 38
>RGS17_HUMAN (Q9UGC6) Regulator of G-protein signaling 17 (RGS17)| Length = 210 Score = 28.1 bits (61), Expect = 5.5 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 174 APKTKKPPSRTCNCWPKWCVCCFC 245 AP ++P + C C WC CC C Sbjct: 18 APGNQRPNNTCCFC---WCCCCSC 38
>RGS17_CHICK (Q9PWA0) Regulator of G-protein signaling 17 (RGS17)| Length = 210 Score = 28.1 bits (61), Expect = 5.5 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 174 APKTKKPPSRTCNCWPKWCVCCFC 245 AP ++P + C C WC CC C Sbjct: 18 APGNQRPNNTCCFC---WCCCCSC 38
>LYTT_OCEIH (Q8EQQ3) Sensory transduction protein lytT| Length = 246 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/18 (55%), Positives = 15/18 (83%) Frame = +3 Query: 60 NKNVVFFDINMKGLDGIQ 113 N NV+F DI+M G++GI+ Sbjct: 48 NPNVIFLDIHMPGINGIE 65
>YURN_BACSU (O32155) Hypothetical ABC transporter permease protein yurN| Length = 292 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/43 (25%), Positives = 24/43 (55%) Frame = -3 Query: 173 IITVQCLPSEDTSSTNIDGALNTIQTFHVDIKEDDVLVGISIV 45 I+++Q +P E + +DGA Q FH+ + + + +++V Sbjct: 177 IVSIQKIPDELYEAARLDGAGKIQQFFHITVPQTKEMSFVAVV 219
>MCSP_MOUSE (P15265) Sperm mitochondrial-associated cysteine-rich protein| Length = 143 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%) Frame = +3 Query: 177 PKTKKPPS--RTCNCWPKWCVCC 239 P KPP + C+C PK C CC Sbjct: 67 PCPLKPPCCPQKCSCCPKKCTCC 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,248,274 Number of Sequences: 219361 Number of extensions: 835640 Number of successful extensions: 2304 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2271 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2300 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
