ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags30i11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 5e-57
2dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 5e-57
3dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 5e-57
4gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome... 176 6e-41
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 176 6e-41
6dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
7dbj|AK066336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
8ref|NM_190018.1| Oryza sativa (japonica cultivar-group), predic... 64 6e-07
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
10dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
11dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
12dbj|AK119221.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
13dbj|AK070499.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
14gb|AC158901.5| Mus musculus chromosome 15, clone RP23-77K13, com... 46 0.15
15gb|AC137974.13| Mus musculus chromosome 15, clone RP23-17J3, com... 46 0.15
16gb|AF092271.1|AF092271 Pipilo aberti isolate ABTO2249AZ mitochon... 44 0.59
17gb|AF092270.1|AF092270 Pipilo aberti isolate AT3CA mitochondrial... 44 0.59
18ref|XM_473160.1| Oryza sativa (japonica cultivar-group), predic... 42 2.3
19emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4,... 42 2.3
20emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4,... 42 2.3
21emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chr... 42 2.3
22gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 42 2.3
23dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
24gb|AC154136.13| Mus musculus BAC RP23-184A3 (Roswell Park Cance... 42 2.3
25dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
26dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
27gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 42 2.3
28ref|XM_463507.1| Oryza sativa (japonica cultivar-group), predic... 40 9.1
29gb|AC165118.3| Oryctolagus cuniculus, clone Oryctolagus cuniculu... 40 9.1
30gb|AY225133.1| Feldmannia irregularis virus a strain FirrV-1 con... 40 9.1
31gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete se... 40 9.1
32gb|AC122844.4| Mus musculus BAC clone RP23-152A2 from 7, complet... 40 9.1
33gb|AC144399.2| Oryctolagus cuniculus clone LBNL1-125D4, complete... 40 9.1
34gb|BC047222.1| Homo sapiens transmembrane protease, serine 5 (sp... 40 9.1
35gb|BC028065.1| Homo sapiens transmembrane protease, serine 5 (sp... 40 9.1
36ref|NM_030770.1| Homo sapiens transmembrane protease, serine 5 (... 40 9.1
37gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 9.1
38gb|AC012496.10| Homo sapiens BAC clone RP11-341N18 from 2, compl... 40 9.1
39gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 9.1
40dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
41dbj|AK121856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.1
42gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_... 40 9.1
43dbj|AK073077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.1
44dbj|AP002436.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.1
45dbj|AP003402.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.1
46gb|DQ163157.1| Candidatus Hamiltonella defensa clone P020050 gen... 40 9.1
47gb|DQ163116.1| Candidatus Hamiltonella defensa clone P010059 gen... 40 9.1
48emb|AL627211.13| Mouse DNA sequence from clone RP23-104G20 on ch... 40 9.1
49dbj|AB028140.1| Homo sapiens mRNA for spinesin, complete cds 40 9.1
50dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1 
>dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A08, full
            insert sequence
          Length = 2096

 Score =  230 bits (116), Expect = 5e-57
 Identities = 215/248 (86%)
 Strand = Plus / Plus

                                                                        
Query: 290  cgacgacgagttcaggtcgcggtacctgcaggattacatcgaggcgaccctccaatccag 349
            ||||||||| ||||||||||  || |||||||||||||||||||| || || ||||||| 
Sbjct: 1515 cgacgacgatttcaggtcgcaatatctgcaggattacatcgaggccacacttcaatccat 1574

                                                                        
Query: 350  caggaacgggtcgaacgtgcagggctacttcgtgtggtcattcgtggacatgttcgaatt 409
            ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| | 
Sbjct: 1575 caggaacgggtcgaacgtgcagggctacttcgtgtggtcgttcctggacgtgttcgagta 1634

                                                                        
Query: 410  cctctttggctaccgcatgggcttcggcctctatggcgtcgacttcaactccgaggagag 469
            ||| || ||||||||| |  ||||||||||||| ||||||||||||  |||   ||||||
Sbjct: 1635 cctgttcggctaccgcctccgcttcggcctctacggcgtcgacttcgcctcgccggagag 1694

                                                                        
Query: 470  gacgaggtaccggaggcactccgccaagtggtatgccggcttcctccgtggcggcgagct 529
            ||| ||||||| ||||||||| ||   |||||| |||||||||||||| |||||||||||
Sbjct: 1695 gaccaggtaccagaggcactcggcgcggtggtacgccggcttcctccgcggcggcgagct 1754

                    
Query: 530  caggccgg 537
            | ||||||
Sbjct: 1755 ccggccgg 1762



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 80/96 (83%)
 Strand = Plus / Plus

                                                                        
Query: 29   tgattttgtcggatttaaccactacgccgcctcatatgtgaaggctgatcttagcaagct 88
            |||||||||||||||||||||||| | ||||   | |||||  || || |||||||| ||
Sbjct: 1224 tgattttgtcggatttaaccactatgtcgccatttttgtgagagccgaccttagcaaact 1283

                                                
Query: 89   ggatcagaagctgagagattacatgggtgatgcagc 124
             |||||||  || |||||||||||||| ||||||||
Sbjct: 1284 tgatcagagcctcagagattacatgggcgatgcagc 1319



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 216  tacaagaaccctgtggtcatgatccacgagaacggagc 253
            |||||||||||| | ||||||||||| ||||| |||||
Sbjct: 1441 tacaagaaccctattgtcatgatccatgagaatggagc 1478
to top
>dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H08, full
            insert sequence
          Length = 2059

 Score =  230 bits (116), Expect = 5e-57
 Identities = 215/248 (86%)
 Strand = Plus / Plus

                                                                        
Query: 290  cgacgacgagttcaggtcgcggtacctgcaggattacatcgaggcgaccctccaatccag 349
            ||||||||| ||||||||||  || |||||||||||||||||||| || || ||||||| 
Sbjct: 1472 cgacgacgatttcaggtcgcaatatctgcaggattacatcgaggccacacttcaatccat 1531

                                                                        
Query: 350  caggaacgggtcgaacgtgcagggctacttcgtgtggtcattcgtggacatgttcgaatt 409
            ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| | 
Sbjct: 1532 caggaacgggtcgaacgtgcagggctacttcgtgtggtcgttcctggacgtgttcgagta 1591

                                                                        
Query: 410  cctctttggctaccgcatgggcttcggcctctatggcgtcgacttcaactccgaggagag 469
            ||| || ||||||||| |  ||||||||||||| ||||||||||||  |||   ||||||
Sbjct: 1592 cctgttcggctaccgcctccgcttcggcctctacggcgtcgacttcgcctcgccggagag 1651

                                                                        
Query: 470  gacgaggtaccggaggcactccgccaagtggtatgccggcttcctccgtggcggcgagct 529
            ||| ||||||| ||||||||| ||   |||||| |||||||||||||| |||||||||||
Sbjct: 1652 gaccaggtaccagaggcactcggcgcggtggtacgccggcttcctccgcggcggcgagct 1711

                    
Query: 530  caggccgg 537
            | ||||||
Sbjct: 1712 ccggccgg 1719



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 80/96 (83%)
 Strand = Plus / Plus

                                                                        
Query: 29   tgattttgtcggatttaaccactacgccgcctcatatgtgaaggctgatcttagcaagct 88
            |||||||||||||||||||||||| | ||||   | |||||  || || |||||||| ||
Sbjct: 1181 tgattttgtcggatttaaccactatgtcgccatttttgtgagagccgaccttagcaaact 1240

                                                
Query: 89   ggatcagaagctgagagattacatgggtgatgcagc 124
             |||||||  || |||||||||||||| ||||||||
Sbjct: 1241 tgatcagagcctcagagattacatgggcgatgcagc 1276



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 216  tacaagaaccctgtggtcatgatccacgagaacggagc 253
            |||||||||||| | ||||||||||| ||||| |||||
Sbjct: 1398 tacaagaaccctattgtcatgatccatgagaatggagc 1435
to top
>dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111O12, full
            insert sequence
          Length = 1993

 Score =  230 bits (116), Expect = 5e-57
 Identities = 215/248 (86%)
 Strand = Plus / Plus

                                                                        
Query: 290  cgacgacgagttcaggtcgcggtacctgcaggattacatcgaggcgaccctccaatccag 349
            ||||||||| ||||||||||  || |||||||||||||||||||| || || ||||||| 
Sbjct: 1406 cgacgacgatttcaggtcgcaatatctgcaggattacatcgaggccacacttcaatccat 1465

                                                                        
Query: 350  caggaacgggtcgaacgtgcagggctacttcgtgtggtcattcgtggacatgttcgaatt 409
            ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| | 
Sbjct: 1466 caggaacgggtcgaacgtgcagggctacttcgtgtggtcgttcctggacgtgttcgagta 1525

                                                                        
Query: 410  cctctttggctaccgcatgggcttcggcctctatggcgtcgacttcaactccgaggagag 469
            ||| || ||||||||| |  ||||||||||||| ||||||||||||  |||   ||||||
Sbjct: 1526 cctgttcggctaccgcctccgcttcggcctctacggcgtcgacttcgcctcgccggagag 1585

                                                                        
Query: 470  gacgaggtaccggaggcactccgccaagtggtatgccggcttcctccgtggcggcgagct 529
            ||| ||||||| ||||||||| ||   |||||| |||||||||||||| |||||||||||
Sbjct: 1586 gaccaggtaccagaggcactcggcgcggtggtacgccggcttcctccgcggcggcgagct 1645

                    
Query: 530  caggccgg 537
            | ||||||
Sbjct: 1646 ccggccgg 1653



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 79/96 (82%)
 Strand = Plus / Plus

                                                                        
Query: 29   tgattttgtcggatttaaccactacgccgcctcatatgtgaaggctgatcttagcaagct 88
            |||||||||||||||||||||||| | ||||   | |||||  || || |||||||| ||
Sbjct: 1115 tgattttgtcggatttaaccactatgtcgccatttttgtgagagccgaccttagcaaact 1174

                                                
Query: 89   ggatcagaagctgagagattacatgggtgatgcagc 124
             |||||||  || |||||||||||| | ||||||||
Sbjct: 1175 tgatcagagcctcagagattacatgagcgatgcagc 1210



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 216  tacaagaaccctgtggtcatgatccacgagaacggagc 253
            |||||||||||| | ||||||||||| ||||| |||||
Sbjct: 1332 tacaagaaccctattgtcatgatccatgagaatggagc 1369
to top
>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0065A15, complete sequence
          Length = 168806

 Score =  176 bits (89), Expect = 6e-41
 Identities = 164/189 (86%)
 Strand = Plus / Minus

                                                                         
Query: 349   gcaggaacgggtcgaacgtgcagggctacttcgtgtggtcattcgtggacatgttcgaat 408
             |||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| |
Sbjct: 71247 gcaggaacgggtcgaacgtgcagggctacttcgtgtggtcgttcctggacgtgttcgagt 71188

                                                                         
Query: 409   tcctctttggctaccgcatgggcttcggcctctatggcgtcgacttcaactccgaggaga 468
              ||| || ||||||||| |  ||||||||||||| ||||||||||||  |||   |||||
Sbjct: 71187 acctgttcggctaccgcctccgcttcggcctctacggcgtcgacttcgcctcgccggaga 71128

                                                                         
Query: 469   ggacgaggtaccggaggcactccgccaagtggtatgccggcttcctccgtggcggcgagc 528
             |||| ||||||| ||||||||| ||   |||||| |||||||||||||| ||||||||||
Sbjct: 71127 ggaccaggtaccagaggcactcggcgcggtggtacgccggcttcctccgcggcggcgagc 71068

                      
Query: 529   tcaggccgg 537
             || ||||||
Sbjct: 71067 tccggccgg 71059



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 152/189 (80%)
 Strand = Plus / Minus

                                                                         
Query: 349   gcaggaacgggtcgaacgtgcagggctacttcgtgtggtcattcgtggacatgttcgaat 408
             |||||||||| ||||||  || ||| ||||||||||||||  |  | ||||||||||| |
Sbjct: 97343 gcaggaacggatcgaacacgcggggatacttcgtgtggtcgatgttcgacatgttcgagt 97284

                                                                         
Query: 409   tcctctttggctaccgcatgggcttcggcctctatggcgtcgacttcaactccgaggaga 468
             ||||||  ||||||||| || | || ||||| |  ||||||||||||| | ||| || ||
Sbjct: 97283 tcctctacggctaccgcttgcggtttggcctgtgcggcgtcgacttcaccgccgcggcga 97224

                                                                         
Query: 469   ggacgaggtaccggaggcactccgccaagtggtatgccggcttcctccgtggcggcgagc 528
             ||||||||||||  | | |||| ||    |||||  ||||||||||||| ||||||||||
Sbjct: 97223 ggacgaggtacctcaagaactcggcgcgatggtactccggcttcctccgcggcggcgagc 97164

                      
Query: 529   tcaggccgg 537
             || ||||||
Sbjct: 97163 tccggccgg 97155



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 80/96 (83%)
 Strand = Plus / Minus

                                                                         
Query: 29    tgattttgtcggatttaaccactacgccgcctcatatgtgaaggctgatcttagcaagct 88
             |||||||||||||||||||||||| | ||||   | |||||  || || |||||||| ||
Sbjct: 72362 tgattttgtcggatttaaccactatgtcgccatttttgtgagagccgaccttagcaaact 72303

                                                 
Query: 89    ggatcagaagctgagagattacatgggtgatgcagc 124
              |||||||  || |||||||||||||| ||||||||
Sbjct: 72302 tgatcagagcctcagagattacatgggcgatgcagc 72267



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                         
Query: 290   cgacgacgagttcaggtcgcggtacctgcaggattacatcgaggcgaccctccaatccag 349
             ||||||||| ||||||||||  || |||||||||||||||||||| || || ||||||| 
Sbjct: 71560 cgacgacgatttcaggtcgcaatatctgcaggattacatcgaggccacacttcaatccat 71501

                 
Query: 350   cagg 353
             ||||
Sbjct: 71500 cagg 71497



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 349   gcaggaacgggtcgaacgtgcagggctacttcgtgtggtca 389
             |||||||||| ||||||  || ||| |||||||||||||||
Sbjct: 89305 gcaggaacggatcgaacacgcggggatacttcgtgtggtca 89265



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 216   tacaagaaccctgtggtcatgatccacgagaa 247
             |||||||||||| | ||||||||||| |||||
Sbjct: 71917 tacaagaaccctattgtcatgatccatgagaa 71886
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  176 bits (89), Expect = 6e-41
 Identities = 164/189 (86%)
 Strand = Plus / Minus

                                                                            
Query: 349      gcaggaacgggtcgaacgtgcagggctacttcgtgtggtcattcgtggacatgttcgaat 408
                |||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| |
Sbjct: 19588172 gcaggaacgggtcgaacgtgcagggctacttcgtgtggtcgttcctggacgtgttcgagt 19588113

                                                                            
Query: 409      tcctctttggctaccgcatgggcttcggcctctatggcgtcgacttcaactccgaggaga 468
                 ||| || ||||||||| |  ||||||||||||| ||||||||||||  |||   |||||
Sbjct: 19588112 acctgttcggctaccgcctccgcttcggcctctacggcgtcgacttcgcctcgccggaga 19588053

                                                                            
Query: 469      ggacgaggtaccggaggcactccgccaagtggtatgccggcttcctccgtggcggcgagc 528
                |||| ||||||| ||||||||| ||   |||||| |||||||||||||| ||||||||||
Sbjct: 19588052 ggaccaggtaccagaggcactcggcgcggtggtacgccggcttcctccgcggcggcgagc 19587993

                         
Query: 529      tcaggccgg 537
                || ||||||
Sbjct: 19587992 tccggccgg 19587984



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 152/189 (80%)
 Strand = Plus / Minus

                                                                            
Query: 349      gcaggaacgggtcgaacgtgcagggctacttcgtgtggtcattcgtggacatgttcgaat 408
                |||||||||| ||||||  || ||| ||||||||||||||  |  | ||||||||||| |
Sbjct: 19614268 gcaggaacggatcgaacacgcggggatacttcgtgtggtcgatgttcgacatgttcgagt 19614209

                                                                            
Query: 409      tcctctttggctaccgcatgggcttcggcctctatggcgtcgacttcaactccgaggaga 468
                ||||||  ||||||||| || | || ||||| |  ||||||||||||| | ||| || ||
Sbjct: 19614208 tcctctacggctaccgcttgcggtttggcctgtgcggcgtcgacttcaccgccgcggcga 19614149

                                                                            
Query: 469      ggacgaggtaccggaggcactccgccaagtggtatgccggcttcctccgtggcggcgagc 528
                ||||||||||||  | | |||| ||    |||||  ||||||||||||| ||||||||||
Sbjct: 19614148 ggacgaggtacctcaagaactcggcgcgatggtactccggcttcctccgcggcggcgagc 19614089

                         
Query: 529      tcaggccgg 537
                || ||||||
Sbjct: 19614088 tccggccgg 19614080



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 80/96 (83%)
 Strand = Plus / Minus

                                                                            
Query: 29       tgattttgtcggatttaaccactacgccgcctcatatgtgaaggctgatcttagcaagct 88
                |||||||||||||||||||||||| | ||||   | |||||  || || |||||||| ||
Sbjct: 19589287 tgattttgtcggatttaaccactatgtcgccatttttgtgagagccgaccttagcaaact 19589228

                                                    
Query: 89       ggatcagaagctgagagattacatgggtgatgcagc 124
                 |||||||  || |||||||||||||| ||||||||
Sbjct: 19589227 tgatcagagcctcagagattacatgggcgatgcagc 19589192



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                            
Query: 290      cgacgacgagttcaggtcgcggtacctgcaggattacatcgaggcgaccctccaatccag 349
                ||||||||| ||||||||||  || |||||||||||||||||||| || || ||||||| 
Sbjct: 19588485 cgacgacgatttcaggtcgcaatatctgcaggattacatcgaggccacacttcaatccat 19588426

                    
Query: 350      cagg 353
                ||||
Sbjct: 19588425 cagg 19588422



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 349      gcaggaacgggtcgaacgtgcagggctacttcgtgtggtca 389
                |||||||||| ||||||  || ||| |||||||||||||||
Sbjct: 19606230 gcaggaacggatcgaacacgcggggatacttcgtgtggtca 19606190



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 216      tacaagaaccctgtggtcatgatccacgagaa 247
                |||||||||||| | ||||||||||| |||||
Sbjct: 19588842 tacaagaaccctattgtcatgatccatgagaa 19588811
to top
>dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1399_D07, complete sequence
          Length = 65000

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 152/189 (80%)
 Strand = Plus / Minus

                                                                         
Query: 349   gcaggaacgggtcgaacgtgcagggctacttcgtgtggtcattcgtggacatgttcgaat 408
             |||||||||| ||||||  || ||| ||||||||||||||  |  | ||||||||||| |
Sbjct: 23750 gcaggaacggatcgaacacgcggggatacttcgtgtggtcgatgttcgacatgttcgagt 23691

                                                                         
Query: 409   tcctctttggctaccgcatgggcttcggcctctatggcgtcgacttcaactccgaggaga 468
             ||||||  ||||||||| || | || ||||| |  ||||||||||||| | ||| || ||
Sbjct: 23690 tcctctacggctaccgcttgcggtttggcctgtgcggcgtcgacttcaccgccgcggcga 23631

                                                                         
Query: 469   ggacgaggtaccggaggcactccgccaagtggtatgccggcttcctccgtggcggcgagc 528
             ||||||||||||  | | |||| ||    |||||  ||||||||||||| ||||||||||
Sbjct: 23630 ggacgaggtacctcaagaactcggcgcgatggtactccggcttcctccgcggcggcgagc 23571

                      
Query: 529   tcaggccgg 537
             || ||||||
Sbjct: 23570 tccggccgg 23562



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 349   gcaggaacgggtcgaacgtgcagggctacttcgtgtggtca 389
             |||||||||| ||||||  || ||| |||||||||||||||
Sbjct: 15712 gcaggaacggatcgaacacgcggggatacttcgtgtggtca 15672
to top
>dbj|AK066336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063O11, full
            insert sequence
          Length = 1919

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 149/186 (80%)
 Strand = Plus / Plus

                                                                        
Query: 352  ggaacgggtcgaacgtgcagggctacttcgtgtggtcattcgtggacatgttcgaattcc 411
            ||||||| ||||||  || ||| ||||||||||||||  |  | ||||||||||| ||||
Sbjct: 1319 ggaacggatcgaacacgcggggatacttcgtgtggtcgatgttcgacatgttcgagttcc 1378

                                                                        
Query: 412  tctttggctaccgcatgggcttcggcctctatggcgtcgacttcaactccgaggagagga 471
            |||  ||||||||| || | || ||||| |  ||||||||||||| | ||| || |||||
Sbjct: 1379 tctacggctaccgcttgcggtttggcctgtgcggcgtcgacttcaccgccgcggcgagga 1438

                                                                        
Query: 472  cgaggtaccggaggcactccgccaagtggtatgccggcttcctccgtggcggcgagctca 531
            |||||||||  | | |||| ||    |||||  ||||||||||||| |||||||||||| 
Sbjct: 1439 cgaggtacctcaagaactcggcgcgatggtactccggcttcctccgcggcggcgagctcc 1498

                  
Query: 532  ggccgg 537
            ||||||
Sbjct: 1499 ggccgg 1504
to top
>ref|NM_190018.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1359

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                        
Query: 363  aacgtgcagggctacttcgtgtggtcattcgtggacatgttcga 406
            |||||| | ||||||||||||||||||||||||||| |||||||
Sbjct: 1135 aacgtgaaaggctacttcgtgtggtcattcgtggacgtgttcga 1178
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 363      aacgtgcagggctacttcgtgtggtcattcgtggacatgttcga 406
                |||||| | ||||||||||||||||||||||||||| |||||||
Sbjct: 40840120 aacgtgaaaggctacttcgtgtggtcattcgtggacgtgttcga 40840163



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 506      cggcttcctccgtggcggcg 525
                ||||||||||||||||||||
Sbjct: 37943151 cggcttcctccgtggcggcg 37943132
to top
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0052O12
          Length = 167881

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                          
Query: 363    aacgtgcagggctacttcgtgtggtcattcgtggacatgttcga 406
              |||||| | ||||||||||||||||||||||||||| |||||||
Sbjct: 142766 aacgtgaaaggctacttcgtgtggtcattcgtggacgtgttcga 142809
to top
>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0506E04
          Length = 139934

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 363   aacgtgcagggctacttcgtgtggtcattcgtggacatgttcga 406
             |||||| | ||||||||||||||||||||||||||| |||||||
Sbjct: 52226 aacgtgaaaggctacttcgtgtggtcattcgtggacgtgttcga 52269
to top
>dbj|AK119221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H04, full
            insert sequence
          Length = 1750

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                        
Query: 363  aacgtgcagggctacttcgtgtggtcattcgtggacatgttcga 406
            |||||| | ||||||||||||||||||||||||||| |||||||
Sbjct: 1320 aacgtgaaaggctacttcgtgtggtcattcgtggacgtgttcga 1363
to top
>dbj|AK070499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054O08, full
            insert sequence
          Length = 1906

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                        
Query: 363  aacgtgcagggctacttcgtgtggtcattcgtggacatgttcga 406
            |||||| | ||||||||||||||||||||||||||| |||||||
Sbjct: 1319 aacgtgaaaggctacttcgtgtggtcattcgtggacgtgttcga 1362
to top
>gb|AC158901.5| Mus musculus chromosome 15, clone RP23-77K13, complete sequence
          Length = 192643

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 87    ctggatcagaagctgagagattacatg 113
             ||||| |||||||||||||||||||||
Sbjct: 43112 ctggaacagaagctgagagattacatg 43138
to top
>gb|AC137974.13| Mus musculus chromosome 15, clone RP23-17J3, complete sequence
          Length = 219617

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 87   ctggatcagaagctgagagattacatg 113
            ||||| |||||||||||||||||||||
Sbjct: 1687 ctggaacagaagctgagagattacatg 1713
to top
>gb|AF092271.1|AF092271 Pipilo aberti isolate ABTO2249AZ mitochondrial control region,
           partial sequence
          Length = 276

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 638 gatgattggttcttgtttttgg 659
           ||||||||||||||||||||||
Sbjct: 87  gatgattggttcttgtttttgg 108
to top
>gb|AF092270.1|AF092270 Pipilo aberti isolate AT3CA mitochondrial control region, partial
           sequence
          Length = 276

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 638 gatgattggttcttgtttttgg 659
           ||||||||||||||||||||||
Sbjct: 86  gatgattggttcttgtttttgg 107
to top
>ref|XM_473160.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1551

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 371  gggctacttcgtgtggtcattcgtggaca 399
            ||||||||||| ||||||| |||||||||
Sbjct: 1356 gggctacttcgcgtggtcaatcgtggaca 1384
to top
>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16,
             complete sequence
          Length = 130718

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 371   gggctacttcgtgtggtcattcgtggaca 399
             ||||||||||| ||||||| |||||||||
Sbjct: 19692 gggctacttcgcgtggtcaatcgtggaca 19720
to top
>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
              complete sequence
          Length = 158601

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 371    gggctacttcgtgtggtcattcgtggaca 399
              ||||||||||| ||||||| |||||||||
Sbjct: 126163 gggctacttcgcgtggtcaatcgtggaca 126191
to top
>emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chromosome 13 Contains the
              Foxq1 gene for forkhead box Q1 (Hfh1l), two novel genes and
              two CpG islands, complete sequence
          Length = 187709

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 148    tttttgacttaaagaaccagt 168
              |||||||||||||||||||||
Sbjct: 182157 tttttgacttaaagaaccagt 182137
to top
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 15      gagcttgggtcttttgatttt 35
               |||||||||||||||||||||
Sbjct: 2239585 gagcttgggtcttttgatttt 2239565
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 371      gggctacttcgtgtggtcattcgtggaca 399
                ||||||||||| ||||||| |||||||||
Sbjct: 25639965 gggctacttcgcgtggtcaatcgtggaca 25639993
to top
>gb|AC154136.13| Mus musculus  BAC RP23-184A3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 220233

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 85     agctggatcagaagctgagag 105
              |||||||||||||||||||||
Sbjct: 179638 agctggatcagaagctgagag 179658
to top
>dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164L07, full
            insert sequence
          Length = 1827

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 371  gggctacttcgtgtggtcattcgtggaca 399
            ||||||||||| ||||||| |||||||||
Sbjct: 1305 gggctacttcgcgtggtcaatcgtggaca 1333
to top
>dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081O13, full
            insert sequence
          Length = 2770

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 371  gggctacttcgtgtggtcattcgtggaca 399
            ||||||||||| ||||||| |||||||||
Sbjct: 2644 gggctacttcgcgtggtcaatcgtggaca 2672
to top
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 15      gagcttgggtcttttgatttt 35
               |||||||||||||||||||||
Sbjct: 2042367 gagcttgggtcttttgatttt 2042387
to top
>ref|XM_463507.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1842

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 506 cggcttcctccgtggcggcg 525
           ||||||||||||||||||||
Sbjct: 763 cggcttcctccgtggcggcg 744
to top
>gb|AC165118.3| Oryctolagus cuniculus, clone Oryctolagus cuniculus-16788057J9, complete
             sequence
          Length = 40531

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    aagctggatcagaagctgag 103
             ||||||||||||||||||||
Sbjct: 16510 aagctggatcagaagctgag 16529
to top
>gb|AY225133.1| Feldmannia irregularis virus a strain FirrV-1 contig A, partial
             sequence
          Length = 55981

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 394   tggacatgttcgaattcctc 413
             ||||||||||||||||||||
Sbjct: 34323 tggacatgttcgaattcctc 34304
to top
>gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete sequence
          Length = 87839

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 194   gctggagcatctccaggtcaaata 217
             ||||||||||||||||| ||||||
Sbjct: 75311 gctggagcatctccaggccaaata 75334
to top
>gb|AC122844.4| Mus musculus BAC clone RP23-152A2 from 7, complete sequence
          Length = 194266

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    cagaagctgagagattacat 112
             ||||||||||||||||||||
Sbjct: 98608 cagaagctgagagattacat 98627
to top
>gb|AC144399.2| Oryctolagus cuniculus clone LBNL1-125D4, complete sequence
          Length = 191541

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     aagctggatcagaagctgag 103
              ||||||||||||||||||||
Sbjct: 170175 aagctggatcagaagctgag 170194
to top
>gb|BC047222.1| Homo sapiens transmembrane protease, serine 5 (spinesin), mRNA
           (cDNA clone IMAGE:5300744), containing frame-shift
           errors
          Length = 1826

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 255 gccagcgtggctgatccctc 274
           ||||||||||||||||||||
Sbjct: 274 gccagcgtggctgatccctc 255
to top
>gb|BC028065.1| Homo sapiens transmembrane protease, serine 5 (spinesin), mRNA
           (cDNA clone IMAGE:5199737), with apparent retained
           intron
          Length = 2055

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 255 gccagcgtggctgatccctc 274
           ||||||||||||||||||||
Sbjct: 311 gccagcgtggctgatccctc 292
to top
>ref|NM_030770.1| Homo sapiens transmembrane protease, serine 5 (spinesin) (TMPRSS5),
           mRNA
          Length = 2265

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 255 gccagcgtggctgatccctc 274
           ||||||||||||||||||||
Sbjct: 549 gccagcgtggctgatccctc 530
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 418    gctaccgcatgggcttcggc 437
              ||||||||||||||||||||
Sbjct: 449359 gctaccgcatgggcttcggc 449378
to top
>gb|AC012496.10| Homo sapiens BAC clone RP11-341N18 from 2, complete sequence
          Length = 122770

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 638    gatgattggttcttgttttt 657
              ||||||||||||||||||||
Sbjct: 101656 gatgattggttcttgttttt 101675
to top
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 429   ggcttcggcctctatggcgtcgac 452
             |||||||||||| |||||||||||
Sbjct: 43423 ggcttcggcctccatggcgtcgac 43446
to top
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698A10
          Length = 137348

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 506   cggcttcctccgtggcggcg 525
             ||||||||||||||||||||
Sbjct: 24095 cggcttcctccgtggcggcg 24076
to top
>dbj|AK121856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102G02, full
            insert sequence
          Length = 2439

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 506  cggcttcctccgtggcggcg 525
            ||||||||||||||||||||
Sbjct: 1027 cggcttcctccgtggcggcg 1008
to top
>gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_480G7, complete sequence
          Length = 218892

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   ggtcattcgtggacatgttc 404
             ||||||||||||||||||||
Sbjct: 45130 ggtcattcgtggacatgttc 45149
to top
>dbj|AK073077.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033015J08, full
           insert sequence
          Length = 2388

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 506 cggcttcctccgtggcggcg 525
           ||||||||||||||||||||
Sbjct: 976 cggcttcctccgtggcggcg 957
to top
>dbj|AP002436.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-627G1, complete
              sequence
          Length = 173509

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    gccagcgtggctgatccctc 274
              ||||||||||||||||||||
Sbjct: 101940 gccagcgtggctgatccctc 101959
to top
>dbj|AP003402.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-661I21, complete
              sequence
          Length = 187946

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    gccagcgtggctgatccctc 274
              ||||||||||||||||||||
Sbjct: 179535 gccagcgtggctgatccctc 179554
to top
>gb|DQ163157.1| Candidatus Hamiltonella defensa clone P020050 genomic sequence
          Length = 1117

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 642 attggttcttgtttttggatggga 665
           |||||||| |||||||||||||||
Sbjct: 864 attggttcgtgtttttggatggga 887
to top
>gb|DQ163116.1| Candidatus Hamiltonella defensa clone P010059 genomic sequence
          Length = 1117

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 642 attggttcttgtttttggatggga 665
           |||||||| |||||||||||||||
Sbjct: 864 attggttcgtgtttttggatggga 887
to top
>emb|AL627211.13| Mouse DNA sequence from clone RP23-104G20 on chromosome 4, complete
             sequence
          Length = 216944

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    gatcttagcaagctggatcagaag 98
             ||||||||||||||| ||||||||
Sbjct: 99441 gatcttagcaagctgtatcagaag 99418
to top
>dbj|AB028140.1| Homo sapiens mRNA for spinesin, complete cds
          Length = 2265

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 255 gccagcgtggctgatccctc 274
           ||||||||||||||||||||
Sbjct: 549 gccagcgtggctgatccctc 530
to top
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0648C09
          Length = 107522

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 506   cggcttcctccgtggcggcg 525
             ||||||||||||||||||||
Sbjct: 39427 cggcttcctccgtggcggcg 39408


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,850,363
Number of Sequences: 3902068
Number of extensions: 4850363
Number of successful extensions: 90039
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89721
Number of HSP's gapped (non-prelim): 304
length of query: 669
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 646
effective length of database: 17,143,297,704
effective search space: 11074570316784
effective search space used: 11074570316784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top