>TR150_RAT (Q5M7V8) Thyroid hormone receptor-associated protein 3 (Thyroid|
           hormone receptor-associated protein complex 150 kDa
           component) (Trap150)
          Length = 951

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -3

Query: 397 HPIQHNYFG--GLNLHRNLERILRFGSAQLALQPGTNPDTHKKRGLDRSGTSPNSVRSH 227
           H ++ ++FG  G+ LH    + L+ G+ Q A +   +P+ H+     R   SP++ R H
Sbjct: 633 HHVKEHHFGSSGMTLHERFTKYLKRGNEQEAAKTKKSPEIHR-----RIDISPSTFRKH 686

>TR150_XENLA (Q5BJ39) Thyroid hormone receptor-associated protein 3 (Thyroid|
           hormone receptor-associated protein complex 150 kDa
           component) (Trap150)
          Length = 951

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -3

Query: 397 HPIQHNYFG--GLNLHRNLERILRFGSAQLALQPGTNPDTHKKRGLDRSGTSPNSVRSH 227
           H ++ ++FG  G+ LH    + L+ G+ Q A +   +P+ H+     R   SP++ R H
Sbjct: 633 HHVKEHHFGSSGMTLHERFTKYLKRGNEQEAAKNKKSPEIHR-----RIDISPSTFRKH 686

>TR150_MOUSE (Q569Z6) Thyroid hormone receptor-associated protein 3 (Thyroid|
           hormone receptor-associated protein complex 150 kDa
           component) (Trap150)
          Length = 951

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -3

Query: 397 HPIQHNYFG--GLNLHRNLERILRFGSAQLALQPGTNPDTHKKRGLDRSGTSPNSVRSH 227
           H ++ ++FG  G+ LH    + L+ G+ Q A +   +P+ H+     R   SP++ R H
Sbjct: 633 HHVKEHHFGSSGMTLHERFTKYLKRGNEQEAAKNKKSPEIHR-----RIDISPSTFRKH 686

>TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein 3 (Thyroid|
           hormone receptor-associated protein complex 150 kDa
           component) (Trap150)
          Length = 955

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -3

Query: 397 HPIQHNYFG--GLNLHRNLERILRFGSAQLALQPGTNPDTHKKRGLDRSGTSPNSVRSH 227
           H ++ ++FG  G+ LH    + L+ G+ Q A +   +P+ H+     R   SP++ R H
Sbjct: 636 HHVKEHHFGSSGMTLHERFTKYLKRGTEQEAAKNKKSPEIHR-----RIDISPSTFRKH 689

>LARP_DROME (Q9VAW5) La-related protein (dlarp)|
          Length = 1403

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
 Frame = -3

Query: 397  HPIQHNYFGGLNLHRNLERILRFGSAQLALQPGT--------NPDTHKKRGLDRSGTSPN 242
            H  Q  Y GG N  +N  R   FGS  + ++ G+        N +   +  L R G++  
Sbjct: 1285 HQYQQGY-GGYNQQQNRRRTGSFGSTTVRIRSGSLGNKPQVANRNQGSQHELRRGGSNSG 1343

Query: 241  SVRSHKQQQLKLGAGSGS 188
                 +QQQ K   G+GS
Sbjct: 1344 LAPHKRQQQQKPKPGAGS 1361

>PYRD_DEIRA (Q9RX14) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate|
           oxidase) (DHOdehase) (DHODase) (DHOD)
          Length = 369

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 14/61 (22%)
 Frame = -1

Query: 204 APDLDLANF--------------LIQANIRTPRAKNGIAHRNRQRAAAISHQPRTDRTRQ 67
           APDL  A+F              LI +N  T  ++ G++H NR++A  +S +P TDR+ +
Sbjct: 234 APDLHPADFEASVGAVLDAGASGLIISN--TTLSRGGLSHPNREQAGGLSGRPLTDRSTE 291

Query: 66  V 64
           +
Sbjct: 292 L 292

>MYOA_PLAFB (Q9UAR6) Myosin A (PfM-A)|
          Length = 818

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 168 PGLGNSLDPDPAPSFNCCCLCDLTEFGDVPDRSNPLFLCVSGFV 299
           PG G   D DP  ++NC    D   FGD+   ++    CV  F+
Sbjct: 74  PGTGTPYDIDPTHAWNCNSQVDPMSFGDIGLLNHTNIPCVLDFL 117

>MYOA_PLAF7 (Q8IDR3) Myosin A (PfM-A)|
          Length = 818

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 168 PGLGNSLDPDPAPSFNCCCLCDLTEFGDVPDRSNPLFLCVSGFV 299
           PG G   D DP  ++NC    D   FGD+   ++    CV  F+
Sbjct: 74  PGTGTPYDIDPTHAWNCNSQVDPMSFGDIGLLNHTNIPCVLDFL 117

>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)|
          Length = 3124

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 100  DCCCSLPISMRDPVFCPRRPDVC 168
            D CC LP SMRD   CP  P+ C
Sbjct: 2722 DRCCDLP-SMRDEAKCPALPNAC 2743

>BKRB2_CAVPO (O70526) B2 bradykinin receptor (BK-2 receptor) (B2R)|
          Length = 372

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 238 RNSAMCLTDLILSFCVCQDSFQVVVQVEPTQIEGFVPGC 354
           R + + +  ++L F VC   FQ+   ++  ++ GF+PGC
Sbjct: 240 RRATVLVLAVLLLFVVCWLPFQIGTFLDTLRLLGFLPGC 278

>RL15_DEIRA (Q9RSK9) 50S ribosomal protein L15|
          Length = 156

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 304 PGTNPDTHKKRGLDRSGTSPNSVRSHKQQQLKLGAGSGS 188
           PG+  D  K+ G    GT   + R HK Q+ + GAG G+
Sbjct: 10  PGSRKD-RKRVGRGPGGTDKTAGRGHKGQKSRSGAGKGA 47

>TRFL_HUMAN (P02788) Lactotransferrin precursor (EC 3.4.21.-) (Lactoferrin)|
           (Talalactoferrin alfa) [Contains: Kaliocin-1;
           Lactoferroxin A; Lactoferroxin B; Lactoferroxin C]
          Length = 710

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -1

Query: 222 NNN*SWAPDLDLANF--LIQANIRTPRAKNGIAH-RNRQRAAAISHQPRTDRTRQVPEHR 52
           NNN +WA DL LA+F  L     R P  +    H       A +S   + +R +QV  H+
Sbjct: 576 NNNEAWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQ 635

Query: 51  PIREG 37
             + G
Sbjct: 636 QAKFG 640

>YLB8_CAEEL (P46582) Hypothetical protein C34E10.8|
          Length = 1024

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 256 GTSPNSVRSHKQQQLKLGAGSGSSEFPNPGK 164
           GTSPNS + H+Q Q K+ +   ++   +PGK
Sbjct: 469 GTSPNSYQFHQQSQKKMPSIISTAYNSSPGK 499

>VASN_HUMAN (Q6EMK4) Vasorin precursor (Protein Slit-like 2)|
          Length = 673

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
 Frame = +3

Query: 3   ATTTTAFAPSSR-----PPELVGALAPAWFDRSE 89
           ATTTTA  P++R     P  L  +LAP W   +E
Sbjct: 351 ATTTTATVPTTRPVVREPTALSSSLAPTWLSPTE 384

>RPOA1_THECE (P31813) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)|
          Length = 905

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 444 QIEIRVMAILFEPSRSIPYSTIILGGSICTATWNESFDLGRLNLH 310
           Q  +  M+I+    R +PY T  L  S+C   +N  FD   +NLH
Sbjct: 427 QPSLHRMSIMAHRVRVMPYRTFRLNLSVC-PPYNADFDGDEMNLH 470

>ARLY_XYLFA (Q9PEM5) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 445

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 24/85 (28%), Positives = 35/85 (41%)
 Frame = -1

Query: 264 IGQAHRRIPLDRTSNNN*SWAPDLDLANFLIQANIRTPRAKNGIAHRNRQRAAAISHQPR 85
           +G+  R+I   R+ N+    A  L L + L Q +         IAH   QRAAA  H P 
Sbjct: 103 LGETGRKIHTGRSRNDQILVATRLWLKDRLTQLST----LNRDIAHHALQRAAAEQHLP- 157

Query: 84  TDRTRQVPEHRPIREGVRRERKRWW 10
                 +P +  ++  V      WW
Sbjct: 158 ------MPGYTHLQRAVVSSAGMWW 176


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,988,939
Number of Sequences: 219361
Number of extensions: 1549289
Number of successful extensions: 4204
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4202
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)