ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags30i07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC147092.3| Pan troglodytes BAC clone RP43-55E11 from 7, comp... 46 0.100
2gb|AY688836.1| Carassius auratus corticotropin-releasing factor ... 44 0.39
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.39
5emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.39
6emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.39
7gb|AC099513.3| Homo sapiens chromosome 5 clone RP11-395C3, compl... 42 1.6
8ref|XM_538507.2| PREDICTED: Canis familiaris similar to EH domai... 40 6.1
9ref|XM_860759.1| PREDICTED: Canis familiaris similar to EH domai... 40 6.1
10gb|AC105405.3| Mus musculus BAC clone RP24-119C8 from 9, complet... 40 6.1
11gb|AC114804.5| Homo sapiens BAC clone RP11-1181A2 from 2, comple... 40 6.1
12gb|AC134914.5| Mus musculus BAC clone RP23-227C5 from 9, complet... 40 6.1

>gb|AC147092.3| Pan troglodytes BAC clone RP43-55E11 from 7, complete sequence
          Length = 153171

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 274   tctttttgtgtgtgtcaggattc 296
             |||||||||||||||||||||||
Sbjct: 18256 tctttttgtgtgtgtcaggattc 18234



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>gb|AY688836.1| Carassius auratus corticotropin-releasing factor receptor type 1
            mRNA, complete cds
          Length = 2771

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 271  ctctctttttgtgtgtgtcagg 292
            ||||||||||||||||||||||
Sbjct: 2133 ctctctttttgtgtgtgtcagg 2112



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 264      tctaatcctctctttttgtgtg 285
                ||||||||||||||||||||||
Sbjct: 21645260 tctaatcctctctttttgtgtg 21645239



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 264      tctaatcctctctttttgtgtg 285
                ||||||||||||||||||||||
Sbjct: 21573605 tctaatcctctctttttgtgtg 21573584



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>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 186030

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 264    tctaatcctctctttttgtgtg 285
              ||||||||||||||||||||||
Sbjct: 167291 tctaatcctctctttttgtgtg 167312



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>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa
           from chromosome 12 of cultivar Nipponbare of ssp.
           japonica of Oryza sativa (rice), complete sequence
          Length = 158019

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 264 tctaatcctctctttttgtgtg 285
           ||||||||||||||||||||||
Sbjct: 605 tctaatcctctctttttgtgtg 626



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>gb|AC099513.3| Homo sapiens chromosome 5 clone RP11-395C3, complete sequence
          Length = 156348

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 210   tttaattgttgttgcttgtgc 230
             |||||||||||||||||||||
Sbjct: 83009 tttaattgttgttgcttgtgc 82989



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>ref|XM_538507.2| PREDICTED: Canis familiaris similar to EH domain binding protein 1,
            transcript variant 1 (LOC481386), mRNA
          Length = 4711

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 6    accaccaccaccgctttcgctccctcct 33
            |||||||||||| ||||| |||||||||
Sbjct: 3830 accaccaccacccctttccctccctcct 3857



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>ref|XM_860759.1| PREDICTED: Canis familiaris similar to EH domain binding protein 1,
            transcript variant 5 (LOC481386), mRNA
          Length = 4606

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 6    accaccaccaccgctttcgctccctcct 33
            |||||||||||| ||||| |||||||||
Sbjct: 3725 accaccaccacccctttccctccctcct 3752



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>gb|AC105405.3| Mus musculus BAC clone RP24-119C8 from 9, complete sequence
          Length = 47060

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 271   ctctctttttgtgtgtgtcaggat 294
             ||||||||||||||||||| ||||
Sbjct: 45431 ctctctttttgtgtgtgtctggat 45454



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>gb|AC114804.5| Homo sapiens BAC clone RP11-1181A2 from 2, complete sequence
          Length = 94984

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   tctctttttgtgtgtgtcag 291
             ||||||||||||||||||||
Sbjct: 65188 tctctttttgtgtgtgtcag 65169



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>gb|AC134914.5| Mus musculus BAC clone RP23-227C5 from 9, complete sequence
          Length = 206831

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 271    ctctctttttgtgtgtgtcaggat 294
              ||||||||||||||||||| ||||
Sbjct: 195941 ctctctttttgtgtgtgtctggat 195918


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,652,455
Number of Sequences: 3902068
Number of extensions: 3652455
Number of successful extensions: 70292
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70210
Number of HSP's gapped (non-prelim): 82
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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