| Clone Name | bags30i07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC147092.3| Pan troglodytes BAC clone RP43-55E11 from 7, complete sequence Length = 153171 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Minus Query: 274 tctttttgtgtgtgtcaggattc 296 ||||||||||||||||||||||| Sbjct: 18256 tctttttgtgtgtgtcaggattc 18234
>gb|AY688836.1| Carassius auratus corticotropin-releasing factor receptor type 1 mRNA, complete cds Length = 2771 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 ctctctttttgtgtgtgtcagg 292 |||||||||||||||||||||| Sbjct: 2133 ctctctttttgtgtgtgtcagg 2112
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 264 tctaatcctctctttttgtgtg 285 |||||||||||||||||||||| Sbjct: 21645260 tctaatcctctctttttgtgtg 21645239
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 264 tctaatcctctctttttgtgtg 285 |||||||||||||||||||||| Sbjct: 21573605 tctaatcctctctttttgtgtg 21573584
>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 186030 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 264 tctaatcctctctttttgtgtg 285 |||||||||||||||||||||| Sbjct: 167291 tctaatcctctctttttgtgtg 167312
>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158019 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 264 tctaatcctctctttttgtgtg 285 |||||||||||||||||||||| Sbjct: 605 tctaatcctctctttttgtgtg 626
>gb|AC099513.3| Homo sapiens chromosome 5 clone RP11-395C3, complete sequence Length = 156348 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 tttaattgttgttgcttgtgc 230 ||||||||||||||||||||| Sbjct: 83009 tttaattgttgttgcttgtgc 82989
>ref|XM_538507.2| PREDICTED: Canis familiaris similar to EH domain binding protein 1, transcript variant 1 (LOC481386), mRNA Length = 4711 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 6 accaccaccaccgctttcgctccctcct 33 |||||||||||| ||||| ||||||||| Sbjct: 3830 accaccaccacccctttccctccctcct 3857
>ref|XM_860759.1| PREDICTED: Canis familiaris similar to EH domain binding protein 1, transcript variant 5 (LOC481386), mRNA Length = 4606 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 6 accaccaccaccgctttcgctccctcct 33 |||||||||||| ||||| ||||||||| Sbjct: 3725 accaccaccacccctttccctccctcct 3752
>gb|AC105405.3| Mus musculus BAC clone RP24-119C8 from 9, complete sequence Length = 47060 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 ctctctttttgtgtgtgtcaggat 294 ||||||||||||||||||| |||| Sbjct: 45431 ctctctttttgtgtgtgtctggat 45454
>gb|AC114804.5| Homo sapiens BAC clone RP11-1181A2 from 2, complete sequence Length = 94984 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 tctctttttgtgtgtgtcag 291 |||||||||||||||||||| Sbjct: 65188 tctctttttgtgtgtgtcag 65169
>gb|AC134914.5| Mus musculus BAC clone RP23-227C5 from 9, complete sequence Length = 206831 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 271 ctctctttttgtgtgtgtcaggat 294 ||||||||||||||||||| |||| Sbjct: 195941 ctctctttttgtgtgtgtctggat 195918 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,652,455 Number of Sequences: 3902068 Number of extensions: 3652455 Number of successful extensions: 70292 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70210 Number of HSP's gapped (non-prelim): 82 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)