No.
Definition
Score (bits)
E Value
1 dbj|AK065862.1| Oryza sativa (japonica cultivar-group) cDNA clon...
272
1e-69
2 dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...
115
2e-22
3 dbj|AP005969.3| Oryza sativa (japonica cultivar-group) genomic D...
115
2e-22
4 dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic D...
115
2e-22
5 dbj|AP005829.3| Oryza sativa (japonica cultivar-group) genomic D...
54
6e-04
6 gb|AC161482.6| Mus musculus chromosome 1, clone RP23-415K20, com...
46
0.14
7 gb|AC166776.6| Mus musculus chromosome 5, clone RP23-24K16, comp...
44
0.55
8 gb|AC165168.3| Mus musculus BAC clone RP23-12D3 from chromosome ...
44
0.55
9 gb|AC127289.4| Mus musculus BAC clone RP23-359O14 from chromosom...
44
0.55
10 emb|BX510917.5| Zebrafish DNA sequence from clone CH211-250O15 i...
44
0.55
11 gb|AC101737.6| Mus musculus chromosome 1, clone RP23-471L1, comp...
42
2.2
12 gb|AC011939.9| Homo sapiens chromosome 15, clone RP11-16E23, com...
42
2.2
13 gb|AF204973.1|AF204973 Pseudonaja textilis alpha neurotoxin (snt...
42
2.2
14 gb|AF204972.1|AF204972 Pseudonaja textilis alpha neurotoxin (snt...
42
2.2
15 gb|AF204971.1|AF204971 Pseudonaja textilis alpha neurotoxin (snt...
42
2.2
16 gb|AF204970.1|AF204970 Pseudonaja textilis alpha neurotoxin (snt...
42
2.2
17 gb|AF204969.1|AF204969 Pseudonaja textilis alpha neurotoxin (snt...
42
2.2
18 dbj|BS000060.1| Pan troglodytes chromosome 22 clone:RP43-086L15,...
42
2.2
19 gb|AC005393.1|AC005393 Homo sapiens chromosome 19, CIT-HSP BAC 4...
42
2.2
20 gb|AC147973.3| Gallus gallus BAC clone CH261-44G9 from chromosom...
42
2.2
21 gb|AC114617.16| Mus musculus chromosome 5, clone RP24-84E3, comp...
40
8.6
22 ref|XM_421653.1| PREDICTED: Gallus gallus similar to FLJ00156 pr...
40
8.6
23 ref|NM_008712.1| Mus musculus nitric oxide synthase 1, neuronal ...
40
8.6
24 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
40
8.6
25 gb|BC066101.1| Mus musculus nitric oxide synthase 1, neuronal, m...
40
8.6
26 gb|AC122191.4| Mus musculus BAC clone RP23-42J4 from 6, complete...
40
8.6
27 emb|AL590105.19| Human DNA sequence from clone RP11-273H7 on chr...
40
8.6
28 emb|AL356598.24| Human DNA sequence from clone RP11-750K17 on ch...
40
8.6
29 emb|AL356057.12| Human DNA sequence from clone RP11-474L11 on ch...
40
8.6
30 emb|AL136371.8| Human DNA sequence from clone RP11-110P20 on chr...
40
8.6
31 emb|AL109842.7|HSDJ726A1 Human DNA sequence from clone RP4-726A1...
40
8.6
32 emb|AL032821.2|HS55C23 Human DNA sequence from clone RP1-55C23 o...
40
8.6
33 emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g...
40
8.6
34 gb|AC091607.11| Homo sapiens 3 BAC RP11-118D22 (Roswell Park Can...
40
8.6
35 gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome...
40
8.6
36 gb|AC078786.22| Homo sapiens 3 BAC RP11-474F17 (Roswell Park Can...
40
8.6
37 gb|AC103562.6| Homo sapiens BAC clone RP11-608O21 from 4, comple...
40
8.6
38 gb|AC068781.19| Homo sapiens 3 BAC RP11-457K10 (Roswell Park Can...
40
8.6
39 gb|AY050667.1| Trichomonas vaginalis eukaryotic release factor 1...
40
8.6
40 gb|AC016304.8| Homo sapiens, clone RP11-25H11, complete sequence
40
8.6
41 gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete...
40
8.6
42 gb|AC068875.5| Homo sapiens chromosome 15, clone RP11-720L8, com...
40
8.6
43 gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co...
40
8.6
44 gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl...
40
8.6
45 gb|AC025043.7| Homo sapiens chromosome 15 clone RP11-516C1 map 1...
40
8.6
46 gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome...
40
8.6
47 gb|AC055715.13|AC055715 Homo sapiens 12 BAC RP11-593B8 (Roswell ...
40
8.6
48 dbj|AK033606.1| Mus musculus adult male cecum cDNA, RIKEN full-l...
40
8.6
49 gb|AF348479.1|AF348479 Bos taurus myostatin gene, partial cds
40
8.6
50 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
40
8.6
51 gb|AC025950.9| Staphylococcus aureus clone sabac-130, complete s...
40
8.6
52 gb|AC025948.16| Staphylococcus aureus clone sabac-101, complete ...
40
8.6
53 gb|AC025430.5|AC025430 Homo sapiens chromosome 15 clone CTD-2329...
40
8.6
54 gb|AC124156.3| Equus caballus clone CH241-280K8, complete sequence
40
8.6
55 ref|NM_172891.1| Mus musculus serine/threonine/tyrosine kinase 1...
40
8.6
56 dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com...
40
8.6
57 gb|BC083183.1| Mus musculus nitric oxide synthase 1, neuronal, m...
40
8.6
58 gb|AC007686.5|AC007686 Homo sapiens chromosome 14 clones CTD-228...
40
8.6
59 tpe|BN000483.1| TPA: TPA_inf: Homo sapiens psiKRTH pseudogene
40
8.6
60 emb|BX957285.9| Zebrafish DNA sequence from clone CH211-160M18 i...
40
8.6
61 gb|AC008370.1|AC008370 Drosophila melanogaster, chromosome 2R, r...
40
8.6
62 gb|AE003838.3| Drosophila melanogaster chromosome 2R, section 12...
40
8.6
63 dbj|D14552.1|MUSNOS Mus musculus mRNA for nitric oxide synthase,...
40
8.6
64 emb|BX901900.20| Zebrafish DNA sequence from clone CH211-189A21 ...
40
8.6
65 dbj|AK112724.1| Ciona intestinalis cDNA, clone:cieg046m19, full ...
40
8.6
66 emb|BX255949.3| Zebrafish DNA sequence from clone DKEY-76F5 in l...
40
8.6
67 gb|AC148326.2| Mus musculus BAC clone RP24-377D18 from 6, comple...
40
8.6
68 emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
40
8.6
69 gb|DP000020.1| Equus caballus target 1 genomic scaffold
40
8.6
70 emb|AL096806.1|CNS00YVC Homo sapiens genomic region containing h...
40
8.6
>dbj|AP008215.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 115 bits (58), Expect = 2e-22
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 303 aaagattgtgcagatgatcaagaacaatacaaatatggctgtagcatttgctacgattac 362
||||||||||||||| || || |||||| ||| ||| ||||||||||||||| || |
Sbjct: 4963603 aaagattgtgcagataattaaaaacaatccaagtataattgtagcatttgctacaatacc 4963662
Query: 363 tcttgtctgctttgttcatccagcaattggtcttggtctgttacttctttcacattcctt 422
||||||||||| |||||||||||||||||||||||| | |||||||| |||||| ||||
Sbjct: 4963663 acttgtctgcttagttcatccagcaattggtcttggtgtattacttctctcacatgcctt 4963722
Query: 423 ccatgc 428
||||||
Sbjct: 4963723 ccatgc 4963728
Score = 89.7 bits (45), Expect = 1e-14
Identities = 153/189 (80%)
Strand = Plus / Plus
Query: 25 atgttcctttgcttcacgccaatacttcttttccttgccttcttatttttcactacacag 84
|||||||||||||||| ||| | |||||||| |||||||| | ||||||| | | ||
Sbjct: 4961191 atgttcctttgcttcataccagttcttctttttcttgcctttcttgttttcaccagagag 4961250
Query: 85 caaaaccctcgatttggaacattcttgtttgttactgtggtctgctatatagttgccaat 144
||||| |||| | ||||||| ||| || | ||||| || | ||||| |||||||| |||
Sbjct: 4961251 caaaatcctccacttggaaccttcctgctagttaccatgatgtgctacatagttgctaat 4961310
Query: 145 ggtttcaccattttggtaacactaagttcgaaattgattctgtatgtggctgccattcta 204
|| ||||| ||||| | | ||||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 4961311 ggcttcacaattttattgatactaagttcaaaattgattctttatgtcgctgctattctt 4961370
Query: 205 catgtcttc 213
|||||||||
Sbjct: 4961371 catgtcttc 4961379
Score = 75.8 bits (38), Expect = 2e-10
Identities = 150/186 (80%), Gaps = 6/186 (3%)
Strand = Plus / Plus
Query: 444 cagtttcttaggagcttcgtttcgtaacatcgctcagaaaaaggacctgtgtaaatccaa 503
||||||||||| |||||| ||||| | ||| ||||||||||||| ||| |||||||
Sbjct: 4963973 cagtttcttagcagcttcatttcgcagtatcactcagaaaaaggatttgtataaatcc-- 4964030
Query: 504 gatggataataatcctattctacaatccaaaagtaaacctgatggactggagcaacttct 563
|||| | ||||| |||||| | || ||| ||||| ||||| || |||||||||||
Sbjct: 4964031 -atgggtgataatattattctgc---ccgaaaataaacaagatggcctcgagcaacttct 4964086
Query: 564 gccaatggatgacagcccaactgctgctaaaagttttactgacagccagctagaagtgtt 623
||| |||||||| |||||||| ||| |||||||||||||||| |||| | ||||| ||
Sbjct: 4964087 gccgatggatgatagcccaacatctgttaaaagttttactgactgccaattggaagtatt 4964146
Query: 624 tgactg 629
||||||
Sbjct: 4964147 tgactg 4964152
Score = 54.0 bits (27), Expect = 6e-04
Identities = 114/143 (79%)
Strand = Plus / Minus
Query: 60 tgccttcttatttttcactacacagcaaaaccctcgatttggaacattcttgtttgttac 119
||||||| |||| ||||| | | ||||||| |||||||||| ||| ||| || |||||||
Sbjct: 5028601 tgccttcctattcttcaccagagagcaaaatcctcgatttgaaaccttcctgattgttac 5028542
Query: 120 tgtggtctgctatatagttgccaatggtttcaccattttggtaacactaagttcgaaatt 179
|| | ||||| || ||||| ||||||||||| || | | | ||||||||| |||||
Sbjct: 5028541 catgatgtgctacatggttgctaatggtttcacaatatgattgatactaagttcaaaatt 5028482
Query: 180 gattctgtatgtggctgccattc 202
|||| | ||||| ||||| ||||
Sbjct: 5028481 gattttttatgttgctgcgattc 5028459
>dbj|AP005969.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1119_C03
Length = 69710
Score = 115 bits (58), Expect = 2e-22
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 303 aaagattgtgcagatgatcaagaacaatacaaatatggctgtagcatttgctacgattac 362
||||||||||||||| || || |||||| ||| ||| ||||||||||||||| || |
Sbjct: 1064 aaagattgtgcagataattaaaaacaatccaagtataattgtagcatttgctacaatacc 1123
Query: 363 tcttgtctgctttgttcatccagcaattggtcttggtctgttacttctttcacattcctt 422
||||||||||| |||||||||||||||||||||||| | |||||||| |||||| ||||
Sbjct: 1124 acttgtctgcttagttcatccagcaattggtcttggtgtattacttctctcacatgcctt 1183
Query: 423 ccatgc 428
||||||
Sbjct: 1184 ccatgc 1189
Score = 75.8 bits (38), Expect = 2e-10
Identities = 150/186 (80%), Gaps = 6/186 (3%)
Strand = Plus / Plus
Query: 444 cagtttcttaggagcttcgtttcgtaacatcgctcagaaaaaggacctgtgtaaatccaa 503
||||||||||| |||||| ||||| | ||| ||||||||||||| ||| |||||||
Sbjct: 1434 cagtttcttagcagcttcatttcgcagtatcactcagaaaaaggatttgtataaatcc-- 1491
Query: 504 gatggataataatcctattctacaatccaaaagtaaacctgatggactggagcaacttct 563
|||| | ||||| |||||| | || ||| ||||| ||||| || |||||||||||
Sbjct: 1492 -atgggtgataatattattctgc---ccgaaaataaacaagatggcctcgagcaacttct 1547
Query: 564 gccaatggatgacagcccaactgctgctaaaagttttactgacagccagctagaagtgtt 623
||| |||||||| |||||||| ||| |||||||||||||||| |||| | ||||| ||
Sbjct: 1548 gccgatggatgatagcccaacatctgttaaaagttttactgactgccaattggaagtatt 1607
Query: 624 tgactg 629
||||||
Sbjct: 1608 tgactg 1613
Score = 54.0 bits (27), Expect = 6e-04
Identities = 114/143 (79%)
Strand = Plus / Minus
Query: 60 tgccttcttatttttcactacacagcaaaaccctcgatttggaacattcttgtttgttac 119
||||||| |||| ||||| | | ||||||| |||||||||| ||| ||| || |||||||
Sbjct: 66062 tgccttcctattcttcaccagagagcaaaatcctcgatttgaaaccttcctgattgttac 66003
Query: 120 tgtggtctgctatatagttgccaatggtttcaccattttggtaacactaagttcgaaatt 179
|| | ||||| || ||||| ||||||||||| || | | | ||||||||| |||||
Sbjct: 66002 catgatgtgctacatggttgctaatggtttcacaatatgattgatactaagttcaaaatt 65943
Query: 180 gattctgtatgtggctgccattc 202
|||| | ||||| ||||| ||||
Sbjct: 65942 gattttttatgttgctgcgattc 65920
>dbj|AP005903.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:B1012G11
Length = 167168
Score = 115 bits (58), Expect = 2e-22
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 303 aaagattgtgcagatgatcaagaacaatacaaatatggctgtagcatttgctacgattac 362
||||||||||||||| || || |||||| ||| ||| ||||||||||||||| || |
Sbjct: 146135 aaagattgtgcagataattaaaaacaatccaagtataattgtagcatttgctacaatacc 146194
Query: 363 tcttgtctgctttgttcatccagcaattggtcttggtctgttacttctttcacattcctt 422
||||||||||| |||||||||||||||||||||||| | |||||||| |||||| ||||
Sbjct: 146195 acttgtctgcttagttcatccagcaattggtcttggtgtattacttctctcacatgcctt 146254
Query: 423 ccatgc 428
||||||
Sbjct: 146255 ccatgc 146260
Score = 89.7 bits (45), Expect = 1e-14
Identities = 153/189 (80%)
Strand = Plus / Plus
Query: 25 atgttcctttgcttcacgccaatacttcttttccttgccttcttatttttcactacacag 84
|||||||||||||||| ||| | |||||||| |||||||| | ||||||| | | ||
Sbjct: 143723 atgttcctttgcttcataccagttcttctttttcttgcctttcttgttttcaccagagag 143782
Query: 85 caaaaccctcgatttggaacattcttgtttgttactgtggtctgctatatagttgccaat 144
||||| |||| | ||||||| ||| || | ||||| || | ||||| |||||||| |||
Sbjct: 143783 caaaatcctccacttggaaccttcctgctagttaccatgatgtgctacatagttgctaat 143842
Query: 145 ggtttcaccattttggtaacactaagttcgaaattgattctgtatgtggctgccattcta 204
|| ||||| ||||| | | ||||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 143843 ggcttcacaattttattgatactaagttcaaaattgattctttatgtcgctgctattctt 143902
Query: 205 catgtcttc 213
|||||||||
Sbjct: 143903 catgtcttc 143911
Score = 75.8 bits (38), Expect = 2e-10
Identities = 150/186 (80%), Gaps = 6/186 (3%)
Strand = Plus / Plus
Query: 444 cagtttcttaggagcttcgtttcgtaacatcgctcagaaaaaggacctgtgtaaatccaa 503
||||||||||| |||||| ||||| | ||| ||||||||||||| ||| |||||||
Sbjct: 146505 cagtttcttagcagcttcatttcgcagtatcactcagaaaaaggatttgtataaatcc-- 146562
Query: 504 gatggataataatcctattctacaatccaaaagtaaacctgatggactggagcaacttct 563
|||| | ||||| |||||| | || ||| ||||| ||||| || |||||||||||
Sbjct: 146563 -atgggtgataatattattctgc---ccgaaaataaacaagatggcctcgagcaacttct 146618
Query: 564 gccaatggatgacagcccaactgctgctaaaagttttactgacagccagctagaagtgtt 623
||| |||||||| |||||||| ||| |||||||||||||||| |||| | ||||| ||
Sbjct: 146619 gccgatggatgatagcccaacatctgttaaaagttttactgactgccaattggaagtatt 146678
Query: 624 tgactg 629
||||||
Sbjct: 146679 tgactg 146684
>emb|AL590105.19 | Human DNA sequence from clone RP11-273H7 on chromosome 10 Contains the
5' end of the gene for protein kinase (PKE), gene
KIAA1674, gene LOC170394, the 5' end of a novel gene and
six CpG islands, complete sequence
Length = 132772
Score = 40.1 bits (20), Expect = 8.6
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 224 gctggcaatcttgggaggacggtactca 251
||||||||||||||| ||||||||||||
Sbjct: 70089 gctggcaatcttggg-ggacggtactca 70063
Score = 40.1 bits (20), Expect = 8.6
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 224 gctggcaatcttgggaggacggtactca 251
||||||||||||||| ||||||||||||
Sbjct: 70035 gctggcaatcttggg-ggacggtactca 70009
Score = 40.1 bits (20), Expect = 8.6
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 224 gctggcaatcttgggaggacggtactca 251
||||||||||||||| ||||||||||||
Sbjct: 69981 gctggcaatcttggg-ggacggtactca 69955
Score = 40.1 bits (20), Expect = 8.6
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 224 gctggcaatcttgggaggacggtactca 251
||||||||||||||| ||||||||||||
Sbjct: 69927 gctggcaatcttggg-ggacggtactca 69901
>emb|AL032821.2 |HS55C23 Human DNA sequence from clone RP1-55C23 on chromosome 6q22.3-23.3
Contains a pseudogene similar to part of hepatic leukemia
factor (HLF), the VNN1 gene for vanin 1, a cyclin G
(CCNG1) pseudogene, the VVN3 gene for vanin 3, the VNN2
gene for vanin 2, a novel gene, and the 3' end of the
gene for a novel protein, complete sequence
Length = 143563
Score = 40.1 bits (20), Expect = 8.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 362 ctcttgtctgctttgttcat 381
||||||||||||||||||||
Sbjct: 6634 ctcttgtctgctttgttcat 6653
>emb|AL096806.1 |CNS00YVC Homo sapiens genomic region containing hypervariable minisatellites
chromosome 10[10q26.3] of Homo sapiens
Length = 28712
Score = 40.1 bits (20), Expect = 8.6
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 224 gctggcaatcttgggaggacggtactca 251
||||||||||||||| ||||||||||||
Sbjct: 9269 gctggcaatcttggg-ggacggtactca 9295
Score = 40.1 bits (20), Expect = 8.6
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 224 gctggcaatcttgggaggacggtactca 251
||||||||||||||| ||||||||||||
Sbjct: 9215 gctggcaatcttggg-ggacggtactca 9241
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,738,555
Number of Sequences: 3902068
Number of extensions: 6738555
Number of successful extensions: 142096
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 141720
Number of HSP's gapped (non-prelim): 379
length of query: 630
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 607
effective length of database: 17,143,297,704
effective search space: 10405981706328
effective search space used: 10405981706328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)