ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags30h08 |
|---|---|
| Clone Library Name | barley_pub |
>YBFF_ECOLI (P75736) Esterase ybfF (EC 3.1.-.-)| Length = 254 Score = 35.0 bits (79), Expect = 0.18 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +1 Query: 499 HVLEDAGHWVHADNPDGLFRIL 564 HV+ AGHWVHA+ PD + R + Sbjct: 227 HVIAGAGHWVHAEKPDAVLRAI 248
>MT1B_HUMAN (P07438) Metallothionein-1B (MT-1B) (Metallothionein-IB) (MT-IB)| Length = 61 Score = 32.0 bits (71), Expect = 1.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVG 233 ACAG K C C+ +K C CC VG Sbjct: 14 ACAGSCKCKECKCTSCKKCCCSCCPVG 40
>MT1X_HUMAN (P80297) Metallothionein-1X (MT-1X) (Metallothionein-IX) (MT-IX)| Length = 61 Score = 31.6 bits (70), Expect = 2.0 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVG 233 ACAG K C C+ +K C CC VG Sbjct: 14 ACAGSCKCKECKCTSCKKSCCSCCPVG 40
>MT1F_HUMAN (P04733) Metallothionein-1F (MT-1F) (Metallothionein-IF) (MT-IF)| Length = 61 Score = 31.2 bits (69), Expect = 2.6 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVGGNK 242 CAG K C C+ +K C CC VG +K Sbjct: 15 CAGSCKCKECKCTSCKKSCCSCCPVGCSK 43
>TFB4_DEBHA (Q6BL86) RNA polymerase II transcription factor B subunit 4 (RNA| polymerase II transcription factor B p34 subunit) (RNA polymerase II transcription factor B 34 kDa subunit) Length = 387 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +1 Query: 517 GHWVHADNPDGLFRILSSTFRVETSIR 597 G ++H NP+GL + LS+ F +E SIR Sbjct: 271 GVYLHIANPEGLIQTLSTAFFIEPSIR 297
>MT_PHACO (P68499) Metallothionein (MT) (Fragment)| Length = 49 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVGGN 239 +CAG K +C C RK C CC G N Sbjct: 1 SCAGSCKCKNCRCRSCRKSCCSCCPAGCN 29
>MT_MELGA (P68498) Metallothionein (MT)| Length = 63 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVGGN 239 +CAG K +C C RK C CC G N Sbjct: 15 SCAGSCKCKNCRCRSCRKSCCSCCPAGCN 43
>MT_CHICK (P68497) Metallothionein (MT)| Length = 63 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVGGN 239 +CAG K +C C RK C CC G N Sbjct: 15 SCAGSCKCKNCRCRSCRKSCCSCCPAGCN 43
>MT_CAIMO (P68495) Metallothionein (MT)| Length = 63 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVGGN 239 +CAG K +C C RK C CC G N Sbjct: 15 SCAGSCKCKNCRCRSCRKSCCSCCPAGCN 43
>MT_ANAPL (P68494) Metallothionein (MT)| Length = 63 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVGGN 239 +CAG K +C C RK C CC G N Sbjct: 15 SCAGSCKCKNCRCRSCRKSCCSCCPAGCN 43
>MTB_COLVI (P27087) Metallothionein B (MTB) (Fragment)| Length = 43 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVGGN 239 +CAG K +C C RK C CC G N Sbjct: 1 SCAGSCKCKNCRCRSCRKSCCSCCPAGCN 29
>MTA_COLVI (P27086) Metallothionein A (MTA) (Fragment)| Length = 43 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVGGN 239 +CAG K +C C RK C CC G N Sbjct: 1 SCAGSCKCKNCRCRSCRKSCCSCCPAGCN 29
>EMIL1_HUMAN (Q9Y6C2) EMILIN-1 precursor (Elastin microfibril interface-located| protein 1) (Elastin microfibril interfacer 1) Length = 1016 Score = 30.8 bits (68), Expect = 3.4 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%) Frame = +1 Query: 10 ALSMVEQAAKPLARPVRVWVLDATPGKVRAGLDGE-----DHPAELIEVLRTMPVQVNSK 174 AL +PLARP R + ++ G +GL GE + +L E ++++ ++ Sbjct: 136 ALGPASSTPRPLARPARPNLSGSSAGSPLSGLGGEGPGESEKVQQLEEQVQSLTKELQGL 195 Query: 175 QEVVDALVKGKFSVDVARWVAT 240 + V+ L G+ + DV R V T Sbjct: 196 RGVLQGL-SGRLAEDVQRAVET 216
>MT2_RAT (P04355) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 30.4 bits (67), Expect = 4.4 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVG 233 +CAG K C C+ +K C CC VG Sbjct: 14 SCAGSCKCKQCKCTSCKKSCCSCCPVG 40
>MT2_MOUSE (P02798) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 30.4 bits (67), Expect = 4.4 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVG 233 +CAG K C C+ +K C CC VG Sbjct: 14 SCAGACKCKQCKCTSCKKSCCSCCPVG 40
>MT2_CRILO (P68041) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 30.4 bits (67), Expect = 4.4 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVG 233 +CAG K C C+ +K C CC VG Sbjct: 14 SCAGSCKCKECKCTTCKKSCCSCCPVG 40
>MT2_CRIGR (P67981) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 30.4 bits (67), Expect = 4.4 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVG 233 +CAG K C C+ +K C CC VG Sbjct: 14 SCAGSCKCKECKCTTCKKSCCSCCPVG 40
>MT1H_HUMAN (P80294) Metallothionein-1H (MT-1H) (Metallothionein-IH) (MT-IH)| (Metallothionein-0) (MT-0) Length = 61 Score = 30.4 bits (67), Expect = 4.4 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVG 233 ACAG K C C+ +K C CC +G Sbjct: 14 ACAGSCKCKKCKCTSCKKSCCSCCPLG 40
>PPME1_CRYNE (Q5KBD8) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)| Length = 422 Score = 30.4 bits (67), Expect = 4.4 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +1 Query: 496 MHVLEDAGHWVHADNPDGLFRILSSTFRVETSI 594 + V+ D GH++H DNP GL L + + T + Sbjct: 363 LEVMSDVGHYLHEDNPAGLAATLITFWHRNTRV 395
>MT2_SHEEP (P68302) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVG 233 CAG K C C+ +K C CC VG Sbjct: 15 CAGSCKCKDCKCASCKKSCCSCCPVG 40
>MT2_PONPY (Q5NVS0) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVG 233 CAG K C C+ +K C CC VG Sbjct: 15 CAGSCKCKECKCTSCKKSCCSCCPVG 40
>MT2_MACFA (P68303) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVG 233 CAG K C C+ +K C CC VG Sbjct: 15 CAGSCKCKECKCTSCKKSCCSCCPVG 40
>MT2_HUMAN (P02795) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| (Metallothionein-2A) Length = 61 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVG 233 CAG K C C+ +K C CC VG Sbjct: 15 CAGSCKCKECKCTSCKKSCCSCCPVG 40
>MT2_CERAE (P68304) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVG 233 CAG K C C+ +K C CC VG Sbjct: 15 CAGSCKCKECKCTSCKKSCCSCCPVG 40
>MT2_CANFA (Q9XST5) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVG 233 CAG K C C+ +K C CC VG Sbjct: 15 CAGSCKCKECRCTSCKKSCCSCCPVG 40
>MT2_BOVIN (P68301) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVG 233 CAG K C C+ +K C CC VG Sbjct: 15 CAGSCKCKDCKCASCKKSCCSCCPVG 40
>MT2A_PIG (P79379) Metallothionein-2A (MT-2A) (Metallothionein-IIA) (MT-IIA)| Length = 61 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVG 233 CAG K C C+ +K C CC VG Sbjct: 15 CAGSCKCKDCKCTSCKKSCCSCCPVG 40
>MT1_CANFA (O19000) Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I)| Length = 61 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVG 233 CAG K C C+ +K C CC VG Sbjct: 15 CAGSCKCKECKCTSCKKSCCSCCPVG 40
>MT1I_HUMAN (P80295) Metallothionein-1I (MT-1I) (Metallothionein-II)| Length = 61 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVG 233 CAG K C C+ +K C CC VG Sbjct: 15 CAGSCKCKECKCTSCKKSCCSCCPVG 40
>MT1E_HUMAN (P04732) Metallothionein-1E (MT-1E) (Metallothionein-IE) (MT-IE)| Length = 61 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVG 233 CAG K C C+ +K C CC VG Sbjct: 15 CAGSCKCKECKCTSCKKSCCSCCPVG 40
>MT1B_HORSE (P02801) Metallothionein-1B (MT-1B) (Metallothionein-IB) (MT-IB)| Length = 61 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVG 233 CAG K C C+ +K C CC VG Sbjct: 15 CAGSCKCKQCRCASCKKSCCSCCPVG 40
>MT2_STECO (P14425) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 29.6 bits (65), Expect = 7.5 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVG 233 AC G K C C+ +K C CC VG Sbjct: 14 ACPGSCKCKECKCTSCKKSCCSCCPVG 40
>MT1_BOVIN (P58280) Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I)| Length = 61 Score = 29.6 bits (65), Expect = 7.5 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVG 233 CAG K +C C +K C CC VG Sbjct: 15 CAGSCKCKACRCPSCKKSCCSCCPVG 40
>MT_ICTPU (O93571) Metallothionein (MT)| Length = 60 Score = 29.3 bits (64), Expect = 9.8 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +3 Query: 156 CAG*LKAGSC*CSC*RKIFCGCCTVGGNK 242 C K +C C+C +K C CC G +K Sbjct: 14 CGTSCKCSNCQCACCKKSCCSCCPSGCSK 42
>MT2_MESAU (P17808) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 29.3 bits (64), Expect = 9.8 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVG 233 +C+G K C C+ +K C CC VG Sbjct: 14 SCSGSCKCKECKCTTCKKSCCSCCPVG 40
>MT1H_BOVIN (P55942) Metallothionein-I, hippocampal (MT-1)| Length = 61 Score = 29.3 bits (64), Expect = 9.8 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +3 Query: 153 ACAG*LKAGSC*CSC*RKIFCGCCTVG 233 ACA K C C+ +K C CC VG Sbjct: 14 ACASTCKCKECKCTSCKKSCCSCCPVG 40 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,876,398 Number of Sequences: 219361 Number of extensions: 1688936 Number of successful extensions: 5072 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 4892 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5071 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
