ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags30f07 |
|---|---|
| Clone Library Name | barley_pub |
>CTDSL_CHICK (Q9PTJ6) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) Length = 275 Score = 127 bits (320), Expect = 1e-29 Identities = 59/124 (47%), Positives = 91/124 (73%) Frame = +1 Query: 16 DSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKR 195 ++DF PV + H +YV RP++ +FL+R+ +FE ++FTAS + YA+ + ++LD + Sbjct: 126 NADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-RW 184 Query: 196 RLFRHRVYRESCVYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDP 375 +FR R++RESCV+ GNY+KDLS LGR+LS+V+IVDNSP ++ F +N +P++SWFDD Sbjct: 185 GVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDM 244 Query: 376 NDKE 387 D E Sbjct: 245 TDTE 248
>CTDSL_MOUSE (P58465) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) Length = 276 Score = 127 bits (320), Expect = 1e-29 Identities = 59/124 (47%), Positives = 91/124 (73%) Frame = +1 Query: 16 DSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKR 195 ++DF PV + H +YV RP++ +FL+R+ +FE ++FTAS + YA+ + ++LD + Sbjct: 127 NADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLD-RW 185 Query: 196 RLFRHRVYRESCVYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDP 375 +FR R++RESCV+ GNY+KDLS LGR+LS+V+IVDNSP ++ F +N +P++SWFDD Sbjct: 186 GVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDM 245 Query: 376 NDKE 387 D E Sbjct: 246 TDTE 249
>CTDSL_HUMAN (O15194) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Small CTD phosphatase 3) (SCP3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) (RBSP3) (YA22 protei Length = 276 Score = 127 bits (320), Expect = 1e-29 Identities = 59/124 (47%), Positives = 91/124 (73%) Frame = +1 Query: 16 DSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKR 195 ++DF PV + H +YV RP++ +FL+R+ +FE ++FTAS + YA+ + ++LD + Sbjct: 127 NADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLD-RW 185 Query: 196 RLFRHRVYRESCVYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDP 375 +FR R++RESCV+ GNY+KDLS LGR+LS+V+IVDNSP ++ F +N +P++SWFDD Sbjct: 186 GVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDM 245 Query: 376 NDKE 387 D E Sbjct: 246 TDTE 249
>CTDS1_MOUSE (P58466) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (Golli-interacting protein) (GIP) Length = 261 Score = 125 bits (315), Expect = 4e-29 Identities = 60/124 (48%), Positives = 89/124 (71%) Frame = +1 Query: 16 DSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKR 195 ++DF PV + H +YV RP++ +FL+R+ +FE ++FTAS + YA+ + ++LD K Sbjct: 111 NADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KW 169 Query: 196 RLFRHRVYRESCVYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDP 375 FR R++RESCV+ GNY+KDLS LGRDL RV+I+DNSP ++ F DN +P+ SWFD+ Sbjct: 170 GAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNM 229 Query: 376 NDKE 387 +D E Sbjct: 230 SDTE 233
>CTDS1_HUMAN (Q9GZU7) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (NLI-IF) Length = 261 Score = 125 bits (315), Expect = 4e-29 Identities = 60/124 (48%), Positives = 89/124 (71%) Frame = +1 Query: 16 DSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKR 195 ++DF PV + H +YV RP++ +FL+R+ +FE ++FTAS + YA+ + ++LD K Sbjct: 111 NADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KW 169 Query: 196 RLFRHRVYRESCVYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDP 375 FR R++RESCV+ GNY+KDLS LGRDL RV+I+DNSP ++ F DN +P+ SWFD+ Sbjct: 170 GAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNM 229 Query: 376 NDKE 387 +D E Sbjct: 230 SDTE 233
>CTDS2_HUMAN (O14595) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 2 (EC 3.1.3.16) (Small CTD phosphatase 2) (SCP2) (Nuclear LIM interactor-interacting factor 2) (NLI-interacting factor 2) (Protein OS-4) Length = 271 Score = 124 bits (311), Expect = 1e-28 Identities = 60/141 (42%), Positives = 91/141 (64%) Frame = +1 Query: 16 DSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKR 195 ++DF P+ H +YV RPY+ +FL R+ +FE ++FTAS + YA+ + ++LD + Sbjct: 122 NADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD-RC 180 Query: 196 RLFRHRVYRESCVYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDP 375 +FR R++RESCV+ +G Y+KDLS LGRDL + +I+DNSP ++ F +N +P++SWFDD Sbjct: 181 GVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDM 240 Query: 376 NDKEXXXXXXXXXXXVGVEDV 438 D E G EDV Sbjct: 241 ADTELLNLIPIFEELSGAEDV 261
>CTDS2_MOUSE (Q8BX07) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 2 (EC 3.1.3.16) Length = 270 Score = 123 bits (309), Expect = 2e-28 Identities = 60/141 (42%), Positives = 91/141 (64%) Frame = +1 Query: 16 DSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKR 195 ++DF PV H +YV RPY+ +FL R+ +FE ++FTAS + YA+ + ++LD + Sbjct: 121 NADFIVPVEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD-RC 179 Query: 196 RLFRHRVYRESCVYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDP 375 +FR R++RE+CV+ +G Y+KDLS LGRDL + VI+DNSP ++ F +N +P++SWFDD Sbjct: 180 GVFRARLFREACVFHQGCYVKDLSRLGRDLRKTVILDNSPASYIFHPENAVPVQSWFDDM 239 Query: 376 NDKEXXXXXXXXXXXVGVEDV 438 D E G +DV Sbjct: 240 ADTELLNLIPVFEELSGTDDV 260
>PSR2_YEAST (Q07949) Probable phosphatase PSR2 (EC 3.1.3.-) (Plasma membrane| sodium response protein 2) Length = 397 Score = 121 bits (303), Expect = 9e-28 Identities = 56/123 (45%), Positives = 83/123 (67%) Frame = +1 Query: 19 SDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRR 198 +DF PV + + H +YV RP + +FL RV+ ++E+++FTAS S YA LL+ LDP Sbjct: 249 ADFVLPVEIDDQVHNVYVIKRPGVDEFLNRVSQLYEVVVFTASVSRYANPLLDTLDPNGT 308 Query: 199 LFRHRVYRESCVYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPN 378 + HR++RE+C EGNY+K+LS +GR LS +I+DNSP ++ F + +PI SWF D + Sbjct: 309 I-HHRLFREACYNYEGNYIKNLSQIGRPLSETIILDNSPASYIFHPQHAVPISSWFSDTH 367 Query: 379 DKE 387 D E Sbjct: 368 DNE 370
>PSR1_YEAST (Q07800) Phosphatase PSR1 (EC 3.1.3.-) (Plasma membrane sodium| response protein 1) Length = 427 Score = 120 bits (302), Expect = 1e-27 Identities = 56/123 (45%), Positives = 85/123 (69%) Frame = +1 Query: 19 SDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRR 198 +DF V + + H +YV RP +++FLERV +FE+++FTAS S Y + LL++LD + Sbjct: 279 ADFVLSVEIDDQVHNVYVIKRPGVEEFLERVGKLFEVVVFTASVSRYGDPLLDILDTDK- 337 Query: 199 LFRHRVYRESCVYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPN 378 + HR++RE+C EGNY+K+LS +GR LS ++I+DNSP ++ F + IPI SWF D + Sbjct: 338 VIHHRLFREACYNYEGNYIKNLSQIGRPLSDIIILDNSPASYIFHPQHAIPISSWFSDTH 397 Query: 379 DKE 387 D E Sbjct: 398 DNE 400
>YA22_SCHPO (Q09695) Hypothetical protein C2F7.02c in chromosome I| Length = 325 Score = 112 bits (281), Expect = 3e-25 Identities = 53/125 (42%), Positives = 84/125 (67%) Frame = +1 Query: 13 EDSDFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPK 192 E +DF + + H + V RP + +FL+++ MFEI++FTAS + YA+ +L++LD Sbjct: 177 EPADFVVSIEIDGLQHDVRVVKRPGVDEFLKKMGDMFEIVVFTASLAKYADPVLDMLDHS 236 Query: 193 RRLFRHRVYRESCVYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDD 372 + RHR++RE+C EGN++KDLS LGR+L +I+DNSP ++ F + +PI SWF+D Sbjct: 237 H-VIRHRLFREACCNYEGNFVKDLSQLGRNLEDSIIIDNSPSSYIFHPSHAVPISSWFND 295 Query: 373 PNDKE 387 +D E Sbjct: 296 MHDME 300
>TIM50_ASPFU (Q4WI16) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 501 Score = 92.0 bits (227), Expect = 6e-19 Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 2/135 (1%) Frame = +1 Query: 52 RDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESC 231 R+H + RP + FL + +E+++FT+ S+ A+Q+L LDP R + R ++RE+ Sbjct: 240 REHGWRIAKRPGVDYFLRYLNQYYELVLFTSVPSMMADQVLRKLDPYR-IIRWPLFREAT 298 Query: 232 VYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXX--XX 405 Y +G Y+KDLS L RDLS+V+++D + Q +N I ++ W DP DK Sbjct: 299 RYKDGEYIKDLSYLNRDLSKVILIDTKEEHARLQPENAIILDKWLGDPKDKNLVALIPFL 358 Query: 406 XXXXXVGVEDVRPFI 450 +GVEDVRP + Sbjct: 359 EYIAGMGVEDVRPVL 373
>TIM50_USTMA (Q4PEW9) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 493 Score = 87.8 bits (216), Expect = 1e-17 Identities = 43/112 (38%), Positives = 66/112 (58%) Frame = +1 Query: 52 RDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESC 231 R+H RP L FL ++ +EI++FT A ++ LDP RR + ++RESC Sbjct: 238 REHGWRTAKRPGLDHFLGYLSQFYEIVLFTTQPFFTAGPIIEKLDPDRRFITYTLFRESC 297 Query: 232 VYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE 387 V+G +KDL+ L RDLS+VV+VD +P +F +NGI ++ W + D+E Sbjct: 298 RTVDGKLVKDLNHLNRDLSKVVVVDTNPDSFHLHPENGILVKPWKGEREDRE 349
>TIM50_YEAST (Q02776) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 476 Score = 86.7 bits (213), Expect = 3e-17 Identities = 37/102 (36%), Positives = 66/102 (64%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP FL ++ +EI++F+++ +Y++++ LDP + +++E CVY +G ++K Sbjct: 218 RPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCVYKDGVHIK 277 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDK 384 DLS L RDLS+V+I+D P ++ Q +N IP+E W + +DK Sbjct: 278 DLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPWNGEADDK 319
>TIM50_EMENI (Q5B4P0) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 532 Score = 84.7 bits (208), Expect = 1e-16 Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 2/132 (1%) Frame = +1 Query: 52 RDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESC 231 R+H V RP + FL + +E+++FT+ S+ A+Q+L LDP R + R ++RE+ Sbjct: 269 REHGWRVAKRPGVDYFLRYLNQYYELVLFTSVPSMMADQVLRKLDPYR-IIRWPLFREAT 327 Query: 232 VYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXX--XX 405 Y +G Y+KDLS L RDLS+V+++D + Q +N I ++ W +P DK Sbjct: 328 RYKDGEYIKDLSYLNRDLSKVILIDTKEEHARLQPENAIILDKWNGNPKDKTLVALIPFL 387 Query: 406 XXXXXVGVEDVR 441 +GV+DVR Sbjct: 388 EYLAGMGVDDVR 399
>TIM50_CANGA (Q6FRX4) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 485 Score = 82.8 bits (203), Expect = 4e-16 Identities = 41/125 (32%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP FL ++ +EI++F+++ +YAE++ +DP + +++E CVY +G ++K Sbjct: 224 RPGADYFLGYLSQYYEIVLFSSNYMMYAEKIAEKMDPIHAFISYNLFKEHCVYKDGVHIK 283 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXX-XXXXXXXVGVED 435 DLS L RDL +V+I+D ++ Q +N IP++ W +DK VED Sbjct: 284 DLSKLNRDLKKVMIIDTDENSYKLQPENAIPMDPWDGKADDKLLRLIPFLEYMATQQVED 343 Query: 436 VRPFI 450 VRP + Sbjct: 344 VRPIL 348
>TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 466 Score = 80.5 bits (197), Expect = 2e-15 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 2/135 (1%) Frame = +1 Query: 52 RDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESC 231 R+H V RP + FL + +EI++F++ E+L+ LDP F H + RE Sbjct: 210 REHGWRVAKRPGVDYFLGYLGQYYEIVLFSSQYMANCEKLIMKLDPYHAWFSHVLTREHT 269 Query: 232 VYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXXXXXX 411 Y +G +KDLS++ RD+ +++I+D Q +N IPIE W P DKE Sbjct: 270 TYEDGKLVKDLSLMNRDMGKIIIIDPDTGCTMKQPENSIPIEPWKGTPGDKELVKLIPFL 329 Query: 412 XXXV--GVEDVRPFI 450 V V DVRP + Sbjct: 330 EWLVSQNVNDVRPIL 344
>TIM50_SCHPO (O13636) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 452 Score = 79.7 bits (195), Expect = 3e-15 Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 2/135 (1%) Frame = +1 Query: 52 RDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESC 231 R H RP L FL ++ +E++IFT A+ +++ +DP + RES Sbjct: 194 RQHGWRTAKRPGLDYFLGYLSMYYEVVIFTRQYLATAKPIIDKIDPYHVSISAVLTRESS 253 Query: 232 VYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXX--XX 405 Y +G +KDLS L RDLSRV+++D +P+++ Q DN I + W +P DKE Sbjct: 254 KYEKGKVIKDLSYLNRDLSRVIMIDTNPESWSKQPDNAIAMAPWTGNPKDKELVGLIPLL 313 Query: 406 XXXXXVGVEDVRPFI 450 + ++DVRP + Sbjct: 314 EFIAIMDIKDVRPVL 328
>YHG4_YEAST (P38757) Hypothetical 50.6 kDa protein in RPL14B-GPA1 intergenic| region Length = 446 Score = 79.7 bits (195), Expect = 3e-15 Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 14/131 (10%) Frame = +1 Query: 37 VRFNLRD-HTIY-VRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPK-RRLFR 207 V+F L T+Y + RPY FL +V+ +++IIFTAS YA+ +++ L+ F Sbjct: 283 VKFGLSGIRTLYFIHKRPYCDLFLTKVSKWYDLIIFTASMKEYADPVIDWLESSFPSSFS 342 Query: 208 HRVYRESCVYVEG-NYLKDLSVL----------GRDLSRVVIVDNSPQAFGFQLDNGIPI 354 R YR CV +G Y+KDLS++ L V+I+DNSP ++ +DN I + Sbjct: 343 KRYYRSDCVLRDGVGYIKDLSIVKDSEENGKGSSSSLDDVIIIDNSPVSYAMNVDNAIQV 402 Query: 355 ESWFDDPNDKE 387 E W DP D + Sbjct: 403 EGWISDPTDTD 413
>TIM50_KLULA (Q6CM45) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 480 Score = 79.0 bits (193), Expect = 5e-15 Identities = 35/102 (34%), Positives = 63/102 (61%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP + FL ++ +EI++F+++ +YAE++ LDP + +++E C+Y +G ++K Sbjct: 221 RPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHIK 280 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDK 384 DLS L RDL +V+I+D +F Q +N I +E W +D+ Sbjct: 281 DLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWDGKADDR 322
>TIM50_CANAL (Q59W44) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 469 Score = 78.6 bits (192), Expect = 7e-15 Identities = 34/101 (33%), Positives = 62/101 (61%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP L FL ++ +EI++F+++ IY+++ +N LDP + ++RE+C Y +G +K Sbjct: 214 RPGLDYFLGYLSQYYEIVVFSSNSQIYSDKTVNKLDPYHAYISYALFREACRYKDGKLIK 273 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPND 381 DLS+L RDL + V++D + Q +N I ++ W P++ Sbjct: 274 DLSLLNRDLGKTVMIDVDEDSAALQPENSIIVKKWEGQPDE 314
>TIM50_BRARE (Q6NWD4) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 387 Score = 77.8 bits (190), Expect = 1e-14 Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 2/123 (1%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP + +++A ++EI+IFT+ + A L++ +DP+ + +R++R++ Y+EG+++K Sbjct: 209 RPGIDYLFQQLAPLYEIVIFTSETGMTAYPLIDSIDPQGFVM-YRLFRDATRYMEGHHVK 267 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE--XXXXXXXXXXXVGVE 432 D+S L RD S+V++VD +AFG Q NG+ + W + D+ GVE Sbjct: 268 DVSCLNRDTSKVIVVDCKREAFGLQPFNGLALCKWDGNSEDRTLYDLAAFLKTIATSGVE 327 Query: 433 DVR 441 DVR Sbjct: 328 DVR 330
>TIM50_DEBHA (Q6BVY9) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 471 Score = 77.8 bits (190), Expect = 1e-14 Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 3/127 (2%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP L FL ++ +EI+IF ++ +Y+E + LDP + ++RE+C Y +G +K Sbjct: 216 RPGLDYFLGYLSQYYEIVIFGSNYQMYSENTVGKLDPFHAYVSYALFREACRYKDGKLVK 275 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESW---FDDPNDKEXXXXXXXXXXXVGV 429 DLS+L RDL + V++D ++ Q DN IP++ W +DD K V Sbjct: 276 DLSLLNRDLGKTVLIDVEEDSWSMQPDNAIPMKPWDGSYDDTLVK--LIPFLEYLATQPV 333 Query: 430 EDVRPFI 450 +DVRP + Sbjct: 334 KDVRPIL 340
>TIM50_NEUCR (Q874C1) Import inner membrane translocase subunit tim-50,| mitochondrial precursor Length = 540 Score = 76.6 bits (187), Expect = 3e-14 Identities = 41/112 (36%), Positives = 64/112 (57%) Frame = +1 Query: 52 RDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESC 231 RDH + RP + FL ++ +EI++FT+ AE ++ +DP R + ++RE+ Sbjct: 266 RDHGWRLAKRPGVDYFLRYLSQYYEIVLFTSVPFANAEPIVRKMDPYRFIM-WPLFREAT 324 Query: 232 VYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE 387 Y +G +KDLS L RDLS+V+I+D P+ Q +N I + W DP D E Sbjct: 325 KYKDGEIVKDLSYLNRDLSKVIIIDTDPKHVRAQPENAIVLPKWKGDPKDTE 376
>TIM50_PONPY (Q5RAJ8) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 76.3 bits (186), Expect = 3e-14 Identities = 40/123 (32%), Positives = 72/123 (58%), Gaps = 2/123 (1%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP ++ +++A ++EI+IFT+ + A L++ +DP +R++R++ Y++G+++K Sbjct: 174 RPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDP-HGFISYRLFRDATRYMDGHHVK 232 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXXXXXXXXXV--GVE 432 D+S L RD +RVV+VD +AF Q NG+ + W + +D+ GVE Sbjct: 233 DISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVE 292 Query: 433 DVR 441 DVR Sbjct: 293 DVR 295
>TIM50_HUMAN (Q3ZCQ8) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 76.3 bits (186), Expect = 3e-14 Identities = 40/123 (32%), Positives = 72/123 (58%), Gaps = 2/123 (1%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP ++ +++A ++EI+IFT+ + A L++ +DP +R++R++ Y++G+++K Sbjct: 174 RPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDP-HGFISYRLFRDATRYMDGHHVK 232 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXXXXXXXXXV--GVE 432 D+S L RD +RVV+VD +AF Q NG+ + W + +D+ GVE Sbjct: 233 DISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVE 292 Query: 433 DVR 441 DVR Sbjct: 293 DVR 295
>TIM50_BOVIN (Q3SZB3) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 355 Score = 76.3 bits (186), Expect = 3e-14 Identities = 40/123 (32%), Positives = 72/123 (58%), Gaps = 2/123 (1%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP ++ +++A ++EI+IFT+ + A L++ +DP +R++R++ Y++G+++K Sbjct: 176 RPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDP-HGFISYRLFRDATRYMDGHHVK 234 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXXXXXXXXXV--GVE 432 D+S L RD +RVV+VD +AF Q NG+ + W + +D+ GVE Sbjct: 235 DISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVE 294 Query: 433 DVR 441 DVR Sbjct: 295 DVR 297
>TIM50_MOUSE (Q9D880) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 74.7 bits (182), Expect = 1e-13 Identities = 35/102 (34%), Positives = 66/102 (64%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP ++ +++A ++EI+IFT+ + A L++ +DP +R++R++ Y+EG+++K Sbjct: 174 RPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDP-HGFISYRLFRDATRYMEGHHVK 232 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDK 384 D+S L RD +RVV+VD +AF Q NG+ + W + +D+ Sbjct: 233 DISCLNRDPARVVVVDCKKEAFRLQPFNGVALRPWDGNSDDR 274
>TIM50_CRYNE (Q5KNV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 516 Score = 72.8 bits (177), Expect = 4e-13 Identities = 36/111 (32%), Positives = 62/111 (55%) Frame = +1 Query: 52 RDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESC 231 R H RP + FL ++ +EI++F++ A + +DP + +R++RES Sbjct: 253 RTHGWRTAKRPGVDYFLGYLSQFYEIVLFSSQPLYTAAPIAEKIDPYQAFMPYRLFREST 312 Query: 232 VYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDK 384 V+G +KD+S L RD S+V+++D +P+ Q +NGI ++ W P DK Sbjct: 313 RSVKGKVVKDISFLNRDPSKVIVLDVNPEHVALQPENGIVLQPWNGSPGDK 363
>TIM50_PHYIN (Q5S7T7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor (NIF domain protein 3) Length = 409 Score = 72.0 bits (175), Expect = 6e-13 Identities = 39/92 (42%), Positives = 61/92 (66%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP + +FLE + +EI+IF SQ+ AE+++ LDPK+ H + R++ Y+ G ++K Sbjct: 195 RPGVDEFLETLCQYYEIVIF--SQNYGAEEIVQKLDPKQCAL-HILSRDATRYLNGAHVK 251 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPI 354 DLS L RDL +VVI+D+ P A+ Q +N IP+ Sbjct: 252 DLSNLNRDLRQVVILDDDPAAYQLQPENAIPV 283
>TIM50_ASHGO (Q75A73) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 476 Score = 71.2 bits (173), Expect = 1e-12 Identities = 31/101 (30%), Positives = 59/101 (58%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP L ++ +E ++F ++ +Y+++++ LDP R + ++++ CVY +G ++K Sbjct: 217 RPGADYLLGYLSDYYENVLFPSNYMVYSKKVVEKLDPIRAFITYNLFKDHCVYKDGIHIK 276 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPND 381 DLS L RDL + +I+D P + Q++N I E W +D Sbjct: 277 DLSHLNRDLGKTLIIDTDPNSVKLQMENAILAEPWDGKADD 317
>TIM50_GIBZE (Q4I099) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 525 Score = 71.2 bits (173), Expect = 1e-12 Identities = 38/111 (34%), Positives = 63/111 (56%) Frame = +1 Query: 52 RDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESC 231 R+H + RP + F+ ++ +E+++FT + E ++ LDP R L +YRE+ Sbjct: 255 REHGWRIAKRPGVDYFIRYLSQYYELVLFTTTPYATGEPVMRKLDPFR-LILWPLYREAT 313 Query: 232 VYVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDK 384 + +G +KDLS L RDLS+V+I+D + Q DN I ++ W D +DK Sbjct: 314 KFEDGEIVKDLSYLNRDLSKVIIIDTKAKHVRNQPDNAIILDPWKGDKDDK 364
>TI50A_DROME (Q9V9P3) Import inner membrane translocase subunit TIM50-A,| mitochondrial precursor Length = 343 Score = 69.3 bits (168), Expect = 4e-12 Identities = 37/101 (36%), Positives = 59/101 (58%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP + FL++ + FEI+I+T+ Q + A LL+ LDP + ++R+ R + VEG + K Sbjct: 166 RPGVDYFLQQCSRNFEIVIYTSEQGMTAFPLLDALDPYGYI-KYRLVRGATDLVEGQHTK 224 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPND 381 +L L RDLSRV++VD P DN + + W + +D Sbjct: 225 NLDYLNRDLSRVIVVDCDPYTTPLHPDNSLVLTKWLGNDDD 265
>TI50B_DROME (Q9W0S3) Import inner membrane translocase subunit TIM50-B,| mitochondrial precursor Length = 409 Score = 65.1 bits (157), Expect = 8e-11 Identities = 36/101 (35%), Positives = 56/101 (55%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP + FL+ A FEI+++TA Q + L++ LDP + +R+ R+S + G+++K Sbjct: 236 RPGVDVFLKECAKYFEIVVYTAEQGVTVFPLVDALDPNGCIM-YRLVRDSTHFDGGHHVK 294 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPND 381 +L L RDL RVV+VD + F N I W + ND Sbjct: 295 NLDNLNRDLKRVVVVDWDRNSTKFHPSNSFSIPRWSGNDND 335
>TI50C_DROME (Q9W4V8) Import inner membrane translocase subunit TIM50-C,| mitochondrial precursor Length = 428 Score = 65.1 bits (157), Expect = 8e-11 Identities = 34/101 (33%), Positives = 57/101 (56%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP + FL A FEI++FTA Q + +L+ LDP + +R+ R++ +V+G+++K Sbjct: 255 RPGVDHFLAECAKDFEIVVFTAEQGMTVFPILDALDPNGYIM-YRLVRDATHFVDGHHVK 313 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPND 381 +L L RDL +V++VD A DN + W + +D Sbjct: 314 NLDNLNRDLKKVIVVDWDANATKMHPDNTFGLARWHGNDDD 354
>TIM50_CAEEL (Q22647) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 452 Score = 61.2 bits (147), Expect = 1e-09 Identities = 35/127 (27%), Positives = 68/127 (53%), Gaps = 3/127 (2%) Frame = +1 Query: 79 RPYLKDFLERVA-SMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYL 255 RP L FL+ + FE++I+++ + A +++ DPK+R+ ++++R+ Y+ G+++ Sbjct: 274 RPALDYFLDVIGYPNFEVVIYSSESMMTAAPVVDSFDPKQRIM-YKLFRDCTKYMNGHHV 332 Query: 256 KDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE--XXXXXXXXXXXVGV 429 KDLS L RDLS+V+ +D ++ +N + + W + +D Sbjct: 333 KDLSKLNRDLSKVIYIDFDAKSGQLNPENMLRVPEWKGNMDDTSLVDLAELLKTIHLSDA 392 Query: 430 EDVRPFI 450 EDVRP + Sbjct: 393 EDVRPML 399
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 60.8 bits (146), Expect = 1e-09 Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Frame = +1 Query: 64 IYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVY-RESCV-- 234 ++ R RP+ KDFLE++A ++E+ +FT +YA + LDP+++LF HR+ R+ C+ Sbjct: 221 LHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDP 280 Query: 235 YVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGF 330 + + L++L G S V I+D+ + F Sbjct: 281 FSKTGNLRNLFPCGD--SMVCIIDDREDVWKF 310
>CTDP1_MOUSE (Q7TSG2) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 960 Score = 60.8 bits (146), Expect = 1e-09 Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Frame = +1 Query: 64 IYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVY-RESCV-- 234 ++ R RP+ KDFLE++A ++E+ +FT +YA + LDP+++LF HR+ R+ C+ Sbjct: 221 LHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDP 280 Query: 235 YVEGNYLKDLSVLGRDLSRVVIVDNSPQAFGF 330 + + L++L G S V I+D+ + F Sbjct: 281 FSKTGNLRNLFPCGD--SMVCIIDDREDVWKF 310
>TIM50_CAEBR (Q61JS7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 456 Score = 58.2 bits (139), Expect = 1e-08 Identities = 34/127 (26%), Positives = 67/127 (52%), Gaps = 3/127 (2%) Frame = +1 Query: 79 RPYLKDFLERVA-SMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYL 255 RP L FL+ + FE++I+++ + A +++ D K+R+ ++++R+ Y+ G+++ Sbjct: 278 RPALDYFLDVIGYPNFEVVIYSSESMMTAAPVVDSFDQKQRIM-YKLFRDCTKYMNGHHV 336 Query: 256 KDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE--XXXXXXXXXXXVGV 429 KDLS L RDLS+V+ +D ++ +N + + W + +D Sbjct: 337 KDLSKLNRDLSKVIYIDFDAKSGQLNPENMLRVPEWRGNMDDTSLVDLAELLKTIHLSDA 396 Query: 430 EDVRPFI 450 EDVRP + Sbjct: 397 EDVRPML 403
>TIM50_ARATH (Q8VYE2) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 376 Score = 51.6 bits (122), Expect = 9e-07 Identities = 27/101 (26%), Positives = 53/101 (52%) Frame = +1 Query: 79 RPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLK 258 RP + FLE + +EI++++ +Y + LDP + R+++ R + Y G + + Sbjct: 217 RPGVDAFLEHLGKFYEIVVYSDQMEMYVLPVCEKLDPNGYI-RYKLARGATKYENGKHYR 275 Query: 259 DLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPND 381 DLS L RD +++ V + Q +N +PI+ + + +D Sbjct: 276 DLSKLNRDPKKILFVSANAFESTLQPENSVPIKPYKLEADD 316
>FCP1_YEAST (Q03254) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (CTD phosphatase FCP1) Length = 732 Score = 47.4 bits (111), Expect = 2e-05 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Frame = +1 Query: 67 YVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEG 246 YV+ RP LK+F +VA +FE+ I+T + YA Q+ ++DP LF R+ E Sbjct: 246 YVKVRPGLKEFFAKVAPLFEMHIYTMATRAYALQIAKIVDPTGELFGDRILSRD----EN 301 Query: 247 NYLKDLS---VLGRDLSRVVIVDN 309 L S + D S VV++D+ Sbjct: 302 GSLTTKSLAKLFPTDQSMVVVIDD 325
>FCP1_SCHPO (Q9P376) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (CTD phosphatase fcp1) Length = 723 Score = 47.4 bits (111), Expect = 2e-05 Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Frame = +1 Query: 67 YVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVY-RESCVYVE 243 Y++ RP L FL++++ ++E+ I+T YA+++ ++DP +LF+ RV R+ + Sbjct: 219 YIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLA 278 Query: 244 GNYLKDLSVLGRDLSRVVIVDN 309 L+ L D S VV++D+ Sbjct: 279 QKSLRRL--FPCDTSMVVVIDD 298
>FCP1_ENCCU (Q8SV03) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (CTD phosphatase FCP1) Length = 411 Score = 45.8 bits (107), Expect = 5e-05 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Frame = +1 Query: 70 VRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGN 249 V+ RP L L R++ ++EI ++T YAE+++ ++DP + F R+ +G Sbjct: 96 VKLRPNLDYMLRRISKLYEIHVYTMGTRAYAERIVEIIDPSGKYFDDRIITRD--ENQGV 153 Query: 250 YLKDLS-VLGRDLSRVVIVDNSPQAFGF 330 +K LS + D +VI+D+ P + + Sbjct: 154 LVKRLSRLFPHDHRNIVILDDRPDVWDY 181
>PEX6_SCHPO (O13764) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 948 Score = 34.3 bits (77), Expect = 0.15 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = +1 Query: 100 LERVASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLKDLSVL 273 +E VAS+F +FT S +A+ + L+ K +F V + C + ++KDL VL Sbjct: 439 VEEVASLFSAPVFTISSYEFADATADHLEAKLDMFVQNVVKSPCAII---FVKDLDVL 493
>P53_XENLA (P07193) Cellular tumor antigen p53 (Tumor suppressor p53)| Length = 363 Score = 30.8 bits (68), Expect = 1.7 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = -1 Query: 376 LGRRTNSRSVCHCPTGTQRPVENCQL*QH--ETSHVRELIDPLSSCPPRRRKTRDKLDDG 203 LGRR VC CP +R E+ + + S REL P SS PP +K +DD Sbjct: 240 LGRRCFEVRVCACPGRDRRTEEDNYTKKRGLKPSGKRELAHPPSSEPPLPKKRLVVVDDD 299 Query: 202 TTFFS 188 F+ Sbjct: 300 EEIFT 304
>ERFB_YEAST (Q06551) Palmitoyltransferase ERF2 (EC 2.3.1.-) (DHHC cysteine-rich| domain-containing protein ERF2) (Ras protein acyltransferase) Length = 359 Score = 30.4 bits (67), Expect = 2.2 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = +1 Query: 112 ASMFEIIIFTASQSIYAEQLLNVLDPKRRLFRHRVYRESCVYVEGNYLKDLSVL 273 A +F IF A + L + K+ HRV +E +Y +G++LK++ L Sbjct: 268 AILFTYHIFMAGNQQTTREFLKGIGSKKNPVFHRVVKEENIYNKGSFLKNMGHL 321
>NAS29_CAEEL (Q20958) Zinc metalloproteinase nas-29 precursor (EC 3.4.24.21)| (Nematode astacin 29) Length = 532 Score = 30.0 bits (66), Expect = 2.8 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%) Frame = -1 Query: 388 APCRLGRRTNSRS--VCHCPTG 329 APC+ G TNSR+ VC CPTG Sbjct: 342 APCQNGGFTNSRNCKVCKCPTG 363
>S27A5_MOUSE (Q4LDG0) Bile acyl-CoA synthetase (EC 6.2.1.7) (BACS) (Bile acid| CoA ligase) (BA-CoA ligase) (BAL) (Cholate--CoA ligase) (Very long chain acyl-CoA synthetase-related protein) (VLACS-related) (VLACSR) (Fatty acid transport protein 5) (FATP-5) Length = 689 Score = 29.6 bits (65), Expect = 3.7 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 275 DVTCLVLS*LTILHRPLGSSWTMAYRSRVGS 367 D TCLVL L +L RP SSW + S VG+ Sbjct: 38 DPTCLVLLGLALLGRPWISSWMPHWLSLVGA 68
>ATPE_BUCAP (O51871) ATP synthase epsilon chain (EC 3.6.3.14) (ATP synthase F1| sector epsilon subunit) Length = 138 Score = 29.6 bits (65), Expect = 3.7 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 10/62 (16%) Frame = +1 Query: 166 QLLNVLDPKRRLFRHRVYRESCVYVEGNYLK----------DLSVLGRDLSRVVIVDNSP 315 QLL+++ P H+ E C+Y+ G L+ D+++ G DL R +V Sbjct: 39 QLLSIIKPGVIYIFHKNKTEECLYISGGILEVQPSVVSILADVAIRGIDLDRKRVVKAKK 98 Query: 316 QA 321 QA Sbjct: 99 QA 100
>NCAP_MEASE (P04851) Nucleoprotein (Protein N) (Nucleocapsid protein) (NP| protein) Length = 523 Score = 29.3 bits (64), Expect = 4.8 Identities = 14/56 (25%), Positives = 22/56 (39%) Frame = -1 Query: 367 RTNSRSVCHCPTGTQRPVENCQL*QHETSHVRELIDPLSSCPPRRRKTRDKLDDGT 200 R + H PTGT ++ + R +PL SC P + ++K T Sbjct: 458 RASDARAAHLPTGTPLDIDTASESSQDPQDSRRSAEPLLSCKPWQESRKNKAQTRT 513
>NOTC1_HUMAN (P46531) Neurogenic locus notch homolog protein 1 precursor (Notch| 1) (hN1) (Translocation-associated notch protein TAN-1) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2556 Score = 29.3 bits (64), Expect = 4.8 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 10/61 (16%) Frame = -1 Query: 400 AVLGAPCRLGRR-----TNSRSVCHCPTGTQRP-----VENCQL*QHETSHVRELIDPLS 251 A + PC G N +++C CP+G P V+ C L + H + I+ L Sbjct: 375 ACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGANPCEHAGKCINTLG 434 Query: 250 S 248 S Sbjct: 435 S 435
>Y257_AQUAE (O66617) Hypothetical RNA methyltransferase aq_257 (EC 2.1.1.-)| Length = 425 Score = 28.9 bits (63), Expect = 6.3 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 6/107 (5%) Frame = +1 Query: 22 DFTFPVRFNLRDHTIYVRCRPYLKDFLERVASMFEIIIFTASQSIYAEQLLNVLDPKRRL 201 D + + N RD+ I+ + K R+ + +++ +S + ++L + Sbjct: 316 DAEYNAKINNRDNVIFEEATAF-KHLKRRIGEVINLVVVDPPRSGLLREERDLLLKNKP- 373 Query: 202 FRHRVYRESCVYVEGN---YLKDLSVL---GRDLSRVVIVDNSPQAF 324 + VY+ N + +DL +L G +L R+ ++DN PQ + Sbjct: 374 -------DKIVYISCNPTTFARDLKILTKGGYELKRLKLIDNFPQTY 413
>RPOB_MARPO (P06272) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1065 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/46 (28%), Positives = 26/46 (56%) Frame = -2 Query: 252 VVALHVDARLAINSMTEQPSFRIKNIKQLFCIDTLTSREDDYLKHA 115 + +L + A+++I E P ++I + L I L++ ED+Y + A Sbjct: 430 IASLAIHAKISILGCLESPFYKISKLSNLEEIINLSAAEDEYYRIA 475 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,163,095 Number of Sequences: 219361 Number of extensions: 1217114 Number of successful extensions: 4869 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 4147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4839 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
