| Clone Name | bags30f07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185175.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1335 Score = 371 bits (187), Expect = 1e-99 Identities = 373/435 (85%) Strand = Plus / Plus Query: 11 gtgaagattctgatttcactttcccagttcgttttaatctcagagatcacacaatctatg 70 ||||||||||||| ||||| |||||||||| ||||||||||||||| ||||||||||||| Sbjct: 833 gtgaagattctgacttcacattcccagttcattttaatctcagagagcacacaatctatg 892 Query: 71 tacggtgtcgtccatatctgaaagacttcctggagagagtagccagcatgtttgagataa 130 | || || ||||||||||||||||| ||| |||||| |||||| |||||||||||||| | Sbjct: 893 tgcgttgccgtccatatctgaaagagttcttggagacagtagcaagcatgtttgagatca 952 Query: 131 tcatcttcacggctagtcaaagtatctatgcagaacaactgcttaatgttcttgatccga 190 |||| ||||| |||||||||||||| ||||||||||| || |||||| |||||||||| | Sbjct: 953 tcattttcacagctagtcaaagtatttatgcagaacagctacttaatattcttgatccta 1012 Query: 191 aaagaaggttgttccgtcatcgagtttatcgcgagtcttgcgtctacgtggagggcaact 250 |||| ||||||||||| ||||||||||| |||||||| || ||| |||||||| |||| Sbjct: 1013 aaaggaggttgttccgccatcgagtttaccgcgagtcctgtctctttgtggagggaaact 1072 Query: 251 acttaaaggatctatcagttctcggacgtgacttgtctcgtgttgtcatagttgacaatt 310 |||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||| |||| Sbjct: 1073 acttaaaggatctatcagttcttggacgtgacttggctcgtgtggtcattgttgataatt 1132 Query: 311 ctccacaggcctttgggttccagttggacaatggcataccgatcgagagttggttcgacg 370 | |||||||||||||||||||| || ||||| ||| | || || || |||||||| || | Sbjct: 1133 caccacaggcctttgggttccaattagacaacggcgtccctattgaaagttggtttgatg 1192 Query: 371 acccaaacgacaaggagctcctagcactgctaccgttcctggaaagcctggttggtgtgg 430 | | || |||| || |||||| || | || || || || |||| ||||||| |||| Sbjct: 1193 atcgtaatgacagagaactcctaacattacttccatttttgcaaagtttggttggggtgg 1252 Query: 431 aagatgtccggccat 445 ||||||||||||||| Sbjct: 1253 aagatgtccggccat 1267
>dbj|AK101126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025N10, full insert sequence Length = 1947 Score = 363 bits (183), Expect = 3e-97 Identities = 372/435 (85%) Strand = Plus / Plus Query: 11 gtgaagattctgatttcactttcccagttcgttttaatctcagagatcacacaatctatg 70 ||||||||||||| ||||| |||||||||| ||||||||||||||| ||||||||||||| Sbjct: 1092 gtgaagattctgacttcacattcccagttcattttaatctcagagagcacacaatctatg 1151 Query: 71 tacggtgtcgtccatatctgaaagacttcctggagagagtagccagcatgtttgagataa 130 | || || ||||||||||||||||| ||| |||||| |||||| |||||||||||||| | Sbjct: 1152 tgcgttgccgtccatatctgaaagagttcttggagacagtagcaagcatgtttgagatca 1211 Query: 131 tcatcttcacggctagtcaaagtatctatgcagaacaactgcttaatgttcttgatccga 190 |||| ||||| |||||||||||||| ||||||||||| || |||||| |||||||||| | Sbjct: 1212 tcattttcacagctagtcaaagtatttatgcagaacagctacttaatattcttgatccta 1271 Query: 191 aaagaaggttgttccgtcatcgagtttatcgcgagtcttgcgtctacgtggagggcaact 250 |||| ||||||||||| ||||||||||| |||||||| || ||| |||||||| |||| Sbjct: 1272 aaaggaggttgttccgccatcgagtttaccgcgagtcctgtctctttgtggagggaaact 1331 Query: 251 acttaaaggatctatcagttctcggacgtgacttgtctcgtgttgtcatagttgacaatt 310 |||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||| |||| Sbjct: 1332 acttaaaggatctatcagttcttggacgtgacttggctcgtgtggtcattgttgataatt 1391 Query: 311 ctccacaggcctttgggttccagttggacaatggcataccgatcgagagttggttcgacg 370 | | |||||||||||||||||| || ||||| ||| | || || || |||||||| || | Sbjct: 1392 cacaacaggcctttgggttccaattagacaacggcgtccctattgaaagttggtttgatg 1451 Query: 371 acccaaacgacaaggagctcctagcactgctaccgttcctggaaagcctggttggtgtgg 430 | | || |||| || |||||| || | || || || || |||| ||||||| |||| Sbjct: 1452 atcgtaatgacagagaactcctaacattacttccatttttgcaaagtttggttggggtgg 1511 Query: 431 aagatgtccggccat 445 ||||||||||||||| Sbjct: 1512 aagatgtccggccat 1526
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 343 bits (173), Expect = 3e-91 Identities = 275/309 (88%) Strand = Plus / Minus Query: 11 gtgaagattctgatttcactttcccagttcgttttaatctcagagatcacacaatctatg 70 ||||||||||||| ||||| |||||||||| ||||||||||||||| ||||||||||||| Sbjct: 35470690 gtgaagattctgacttcacattcccagttcattttaatctcagagagcacacaatctatg 35470631 Query: 71 tacggtgtcgtccatatctgaaagacttcctggagagagtagccagcatgtttgagataa 130 | || || ||||||||||||||||| ||| |||||| |||||| |||||||||||||| | Sbjct: 35470630 tgcgttgccgtccatatctgaaagagttcttggagacagtagcaagcatgtttgagatca 35470571 Query: 131 tcatcttcacggctagtcaaagtatctatgcagaacaactgcttaatgttcttgatccga 190 |||| ||||| |||||||||||||| ||||||||||| || |||||| |||||||||| | Sbjct: 35470570 tcattttcacagctagtcaaagtatttatgcagaacagctacttaatattcttgatccta 35470511 Query: 191 aaagaaggttgttccgtcatcgagtttatcgcgagtcttgcgtctacgtggagggcaact 250 |||| ||||||||||| ||||||||||| |||||||| || ||| |||||||| |||| Sbjct: 35470510 aaaggaggttgttccgccatcgagtttaccgcgagtcctgtctctttgtggagggaaact 35470451 Query: 251 acttaaaggatctatcagttctcggacgtgacttgtctcgtgttgtcatagttgacaatt 310 |||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||| |||| Sbjct: 35470450 acttaaaggatctatcagttcttggacgtgacttggctcgtgtggtcattgttgataatt 35470391 Query: 311 ctccacagg 319 | ||||||| Sbjct: 35470390 caccacagg 35470382 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Minus Query: 419 tggttggtgtggaagatgtccggccat 445 ||||||| ||||||||||||||||||| Sbjct: 35469261 tggttggggtggaagatgtccggccat 35469235
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 343 bits (173), Expect = 3e-91 Identities = 275/309 (88%) Strand = Plus / Minus Query: 11 gtgaagattctgatttcactttcccagttcgttttaatctcagagatcacacaatctatg 70 ||||||||||||| ||||| |||||||||| ||||||||||||||| ||||||||||||| Sbjct: 35560762 gtgaagattctgacttcacattcccagttcattttaatctcagagagcacacaatctatg 35560703 Query: 71 tacggtgtcgtccatatctgaaagacttcctggagagagtagccagcatgtttgagataa 130 | || || ||||||||||||||||| ||| |||||| |||||| |||||||||||||| | Sbjct: 35560702 tgcgttgccgtccatatctgaaagagttcttggagacagtagcaagcatgtttgagatca 35560643 Query: 131 tcatcttcacggctagtcaaagtatctatgcagaacaactgcttaatgttcttgatccga 190 |||| ||||| |||||||||||||| ||||||||||| || |||||| |||||||||| | Sbjct: 35560642 tcattttcacagctagtcaaagtatttatgcagaacagctacttaatattcttgatccta 35560583 Query: 191 aaagaaggttgttccgtcatcgagtttatcgcgagtcttgcgtctacgtggagggcaact 250 |||| ||||||||||| ||||||||||| |||||||| || ||| |||||||| |||| Sbjct: 35560582 aaaggaggttgttccgccatcgagtttaccgcgagtcctgtctctttgtggagggaaact 35560523 Query: 251 acttaaaggatctatcagttctcggacgtgacttgtctcgtgttgtcatagttgacaatt 310 |||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||| |||| Sbjct: 35560522 acttaaaggatctatcagttcttggacgtgacttggctcgtgtggtcattgttgataatt 35560463 Query: 311 ctccacagg 319 | ||||||| Sbjct: 35560462 caccacagg 35560454 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Minus Query: 419 tggttggtgtggaagatgtccggccat 445 ||||||| ||||||||||||||||||| Sbjct: 35559333 tggttggggtggaagatgtccggccat 35559307
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete sequence Length = 133846 Score = 343 bits (173), Expect = 3e-91 Identities = 275/309 (88%) Strand = Plus / Plus Query: 11 gtgaagattctgatttcactttcccagttcgttttaatctcagagatcacacaatctatg 70 ||||||||||||| ||||| |||||||||| ||||||||||||||| ||||||||||||| Sbjct: 16936 gtgaagattctgacttcacattcccagttcattttaatctcagagagcacacaatctatg 16995 Query: 71 tacggtgtcgtccatatctgaaagacttcctggagagagtagccagcatgtttgagataa 130 | || || ||||||||||||||||| ||| |||||| |||||| |||||||||||||| | Sbjct: 16996 tgcgttgccgtccatatctgaaagagttcttggagacagtagcaagcatgtttgagatca 17055 Query: 131 tcatcttcacggctagtcaaagtatctatgcagaacaactgcttaatgttcttgatccga 190 |||| ||||| |||||||||||||| ||||||||||| || |||||| |||||||||| | Sbjct: 17056 tcattttcacagctagtcaaagtatttatgcagaacagctacttaatattcttgatccta 17115 Query: 191 aaagaaggttgttccgtcatcgagtttatcgcgagtcttgcgtctacgtggagggcaact 250 |||| ||||||||||| ||||||||||| |||||||| || ||| |||||||| |||| Sbjct: 17116 aaaggaggttgttccgccatcgagtttaccgcgagtcctgtctctttgtggagggaaact 17175 Query: 251 acttaaaggatctatcagttctcggacgtgacttgtctcgtgttgtcatagttgacaatt 310 |||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||| |||| Sbjct: 17176 acttaaaggatctatcagttcttggacgtgacttggctcgtgtggtcattgttgataatt 17235 Query: 311 ctccacagg 319 | ||||||| Sbjct: 17236 caccacagg 17244 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Plus Query: 419 tggttggtgtggaagatgtccggccat 445 ||||||| ||||||||||||||||||| Sbjct: 18365 tggttggggtggaagatgtccggccat 18391
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 343 bits (173), Expect = 3e-91 Identities = 275/309 (88%) Strand = Plus / Minus Query: 11 gtgaagattctgatttcactttcccagttcgttttaatctcagagatcacacaatctatg 70 ||||||||||||| ||||| |||||||||| ||||||||||||||| ||||||||||||| Sbjct: 3653 gtgaagattctgacttcacattcccagttcattttaatctcagagagcacacaatctatg 3594 Query: 71 tacggtgtcgtccatatctgaaagacttcctggagagagtagccagcatgtttgagataa 130 | || || ||||||||||||||||| ||| |||||| |||||| |||||||||||||| | Sbjct: 3593 tgcgttgccgtccatatctgaaagagttcttggagacagtagcaagcatgtttgagatca 3534 Query: 131 tcatcttcacggctagtcaaagtatctatgcagaacaactgcttaatgttcttgatccga 190 |||| ||||| |||||||||||||| ||||||||||| || |||||| |||||||||| | Sbjct: 3533 tcattttcacagctagtcaaagtatttatgcagaacagctacttaatattcttgatccta 3474 Query: 191 aaagaaggttgttccgtcatcgagtttatcgcgagtcttgcgtctacgtggagggcaact 250 |||| ||||||||||| ||||||||||| |||||||| || ||| |||||||| |||| Sbjct: 3473 aaaggaggttgttccgccatcgagtttaccgcgagtcctgtctctttgtggagggaaact 3414 Query: 251 acttaaaggatctatcagttctcggacgtgacttgtctcgtgttgtcatagttgacaatt 310 |||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||| |||| Sbjct: 3413 acttaaaggatctatcagttcttggacgtgacttggctcgtgtggtcattgttgataatt 3354 Query: 311 ctccacagg 319 | ||||||| Sbjct: 3353 caccacagg 3345 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Minus Query: 419 tggttggtgtggaagatgtccggccat 445 ||||||| ||||||||||||||||||| Sbjct: 2224 tggttggggtggaagatgtccggccat 2198
>ref|XM_477086.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1787 Score = 186 bits (94), Expect = 4e-44 Identities = 226/270 (83%) Strand = Plus / Plus Query: 50 tcagagatcacacaatctatgtacggtgtcgtccatatctgaaagacttcctggagagag 109 ||||||| |||||||| ||||| || || ||||| ||||| ||||| ||| ||||||| | Sbjct: 1205 tcagagaacacacaatatatgtccgatgccgtccctatctcaaagagttcttggagaggg 1264 Query: 110 tagccagcatgtttgagataatcatcttcacggctagtcaaagtatctatgcagaacaac 169 | |||| ||||||||| |||||| ||||| || |||||||| || ||||||||||| | Sbjct: 1265 ttgccaatttgtttgagacaatcattttcactgcaagtcaaagcatttatgcagaacagc 1324 Query: 170 tgcttaatgttcttgatccgaaaagaaggttgttccgtcatcgagtttatcgcgagtctt 229 | || |||||||||||||| ||||||| ||||||||||||||| ||||| || || || | Sbjct: 1325 ttctcaatgttcttgatcctaaaagaaagttgttccgtcatcgtgtttaccgtgattcct 1384 Query: 230 gcgtctacgtggagggcaactacttaaaggatctatcagttctcggacgtgacttgtctc 289 | || || |||||||| |||||||||||||||||| ||||||| ||||||||||| ||| Sbjct: 1385 gtgtttatgtggagggaaactacttaaaggatctaacagttcttggacgtgacttaactc 1444 Query: 290 gtgttgtcatagttgacaattctccacagg 319 || | | || |||||||| |||||||||| Sbjct: 1445 gtataatgattgttgacaactctccacagg 1474
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 186 bits (94), Expect = 4e-44 Identities = 226/270 (83%) Strand = Plus / Plus Query: 50 tcagagatcacacaatctatgtacggtgtcgtccatatctgaaagacttcctggagagag 109 ||||||| |||||||| ||||| || || ||||| ||||| ||||| ||| ||||||| | Sbjct: 5842086 tcagagaacacacaatatatgtccgatgccgtccctatctcaaagagttcttggagaggg 5842145 Query: 110 tagccagcatgtttgagataatcatcttcacggctagtcaaagtatctatgcagaacaac 169 | |||| ||||||||| |||||| ||||| || |||||||| || ||||||||||| | Sbjct: 5842146 ttgccaatttgtttgagacaatcattttcactgcaagtcaaagcatttatgcagaacagc 5842205 Query: 170 tgcttaatgttcttgatccgaaaagaaggttgttccgtcatcgagtttatcgcgagtctt 229 | || |||||||||||||| ||||||| ||||||||||||||| ||||| || || || | Sbjct: 5842206 ttctcaatgttcttgatcctaaaagaaagttgttccgtcatcgtgtttaccgtgattcct 5842265 Query: 230 gcgtctacgtggagggcaactacttaaaggatctatcagttctcggacgtgacttgtctc 289 | || || |||||||| |||||||||||||||||| ||||||| ||||||||||| ||| Sbjct: 5842266 gtgtttatgtggagggaaactacttaaaggatctaacagttcttggacgtgacttaactc 5842325 Query: 290 gtgttgtcatagttgacaattctccacagg 319 || | | || |||||||| |||||||||| Sbjct: 5842326 gtataatgattgttgacaactctccacagg 5842355 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 315 acaggcctttgggttccagttggacaatggcat 347 |||||| ||||| |||||||| ||||||||||| Sbjct: 5843035 acaggcttttggattccagttagacaatggcat 5843067
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1119_B04 Length = 151721 Score = 186 bits (94), Expect = 4e-44 Identities = 226/270 (83%) Strand = Plus / Plus Query: 50 tcagagatcacacaatctatgtacggtgtcgtccatatctgaaagacttcctggagagag 109 ||||||| |||||||| ||||| || || ||||| ||||| ||||| ||| ||||||| | Sbjct: 149114 tcagagaacacacaatatatgtccgatgccgtccctatctcaaagagttcttggagaggg 149173 Query: 110 tagccagcatgtttgagataatcatcttcacggctagtcaaagtatctatgcagaacaac 169 | |||| ||||||||| |||||| ||||| || |||||||| || ||||||||||| | Sbjct: 149174 ttgccaatttgtttgagacaatcattttcactgcaagtcaaagcatttatgcagaacagc 149233 Query: 170 tgcttaatgttcttgatccgaaaagaaggttgttccgtcatcgagtttatcgcgagtctt 229 | || |||||||||||||| ||||||| ||||||||||||||| ||||| || || || | Sbjct: 149234 ttctcaatgttcttgatcctaaaagaaagttgttccgtcatcgtgtttaccgtgattcct 149293 Query: 230 gcgtctacgtggagggcaactacttaaaggatctatcagttctcggacgtgacttgtctc 289 | || || |||||||| |||||||||||||||||| ||||||| ||||||||||| ||| Sbjct: 149294 gtgtttatgtggagggaaactacttaaaggatctaacagttcttggacgtgacttaactc 149353 Query: 290 gtgttgtcatagttgacaattctccacagg 319 || | | || |||||||| |||||||||| Sbjct: 149354 gtataatgattgttgacaactctccacagg 149383 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 315 acaggcctttgggttccagttggacaatggcat 347 |||||| ||||| |||||||| ||||||||||| Sbjct: 150063 acaggcttttggattccagttagacaatggcat 150095
>dbj|AP003837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1559_F09 Length = 87792 Score = 186 bits (94), Expect = 4e-44 Identities = 226/270 (83%) Strand = Plus / Plus Query: 50 tcagagatcacacaatctatgtacggtgtcgtccatatctgaaagacttcctggagagag 109 ||||||| |||||||| ||||| || || ||||| ||||| ||||| ||| ||||||| | Sbjct: 16760 tcagagaacacacaatatatgtccgatgccgtccctatctcaaagagttcttggagaggg 16819 Query: 110 tagccagcatgtttgagataatcatcttcacggctagtcaaagtatctatgcagaacaac 169 | |||| ||||||||| |||||| ||||| || |||||||| || ||||||||||| | Sbjct: 16820 ttgccaatttgtttgagacaatcattttcactgcaagtcaaagcatttatgcagaacagc 16879 Query: 170 tgcttaatgttcttgatccgaaaagaaggttgttccgtcatcgagtttatcgcgagtctt 229 | || |||||||||||||| ||||||| ||||||||||||||| ||||| || || || | Sbjct: 16880 ttctcaatgttcttgatcctaaaagaaagttgttccgtcatcgtgtttaccgtgattcct 16939 Query: 230 gcgtctacgtggagggcaactacttaaaggatctatcagttctcggacgtgacttgtctc 289 | || || |||||||| |||||||||||||||||| ||||||| ||||||||||| ||| Sbjct: 16940 gtgtttatgtggagggaaactacttaaaggatctaacagttcttggacgtgacttaactc 16999 Query: 290 gtgttgtcatagttgacaattctccacagg 319 || | | || |||||||| |||||||||| Sbjct: 17000 gtataatgattgttgacaactctccacagg 17029 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 315 acaggcctttgggttccagttggacaatggcat 347 |||||| ||||| |||||||| ||||||||||| Sbjct: 17709 acaggcttttggattccagttagacaatggcat 17741
>dbj|AK109769.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A05, full insert sequence Length = 1787 Score = 186 bits (94), Expect = 4e-44 Identities = 226/270 (83%) Strand = Plus / Plus Query: 50 tcagagatcacacaatctatgtacggtgtcgtccatatctgaaagacttcctggagagag 109 ||||||| |||||||| ||||| || || ||||| ||||| ||||| ||| ||||||| | Sbjct: 1205 tcagagaacacacaatatatgtccgatgccgtccctatctcaaagagttcttggagaggg 1264 Query: 110 tagccagcatgtttgagataatcatcttcacggctagtcaaagtatctatgcagaacaac 169 | |||| ||||||||| |||||| ||||| || |||||||| || ||||||||||| | Sbjct: 1265 ttgccaatttgtttgagacaatcattttcactgcaagtcaaagcatttatgcagaacagc 1324 Query: 170 tgcttaatgttcttgatccgaaaagaaggttgttccgtcatcgagtttatcgcgagtctt 229 | || |||||||||||||| ||||||| ||||||||||||||| ||||| || || || | Sbjct: 1325 ttctcaatgttcttgatcctaaaagaaagttgttccgtcatcgtgtttaccgtgattcct 1384 Query: 230 gcgtctacgtggagggcaactacttaaaggatctatcagttctcggacgtgacttgtctc 289 | || || |||||||| |||||||||||||||||| ||||||| ||||||||||| ||| Sbjct: 1385 gtgtttatgtggagggaaactacttaaaggatctaacagttcttggacgtgacttaactc 1444 Query: 290 gtgttgtcatagttgacaattctccacagg 319 || | | || |||||||| |||||||||| Sbjct: 1445 gtataatgattgttgacaactctccacagg 1474
>gb|AY112440.1| Zea mays CL20332_1 mRNA sequence Length = 630 Score = 180 bits (91), Expect = 3e-42 Identities = 238/287 (82%) Strand = Plus / Minus Query: 157 tatgcagaacaactgcttaatgttcttgatccgaaaagaaggttgttccgtcatcgagtt 216 ||||| || ||||| || |||||||||||||| ||||||| ||||||||||||||| ||| Sbjct: 628 tatgcggagcaacttctcaatgttcttgatcccaaaagaaagttgttccgtcatcgtgtt 569 Query: 217 tatcgcgagtcttgcgtctacgtggagggcaactacttaaaggatctatcagttctcgga 276 ||||| || ||||| ||||| |||||||| |||||| | |||||||| |||| || ||| Sbjct: 568 tatcgtgaatcttgtgtctatgtggagggaaactacatgaaggatctgacagtacttgga 509 Query: 277 cgtgacttgtctcgtgttgtcatagttgacaattctccacaggcctttgggttccagttg 336 |||||||| |||| || | || |||||||||||||| ||||||||||||||||||||| Sbjct: 508 cgtgacttaactcgcgtaatgattgttgacaattctccgcaggcctttgggttccagttg 449 Query: 337 gacaatggcataccgatcgagagttggttcgacgacccaaacgacaaggagctcctagca 396 ||||||||||| || || || || ||||| || || || || |||| |||||| || | Sbjct: 448 gacaatggcattcctatagaaagctggtttgatgatcccaatgacatggagctgctgaaa 389 Query: 397 ctgctaccgttcctggaaagcctggttggtgtggaagatgtccggcc 443 |||| |||||| | |||||| |||| || |||||||||||| |||| Sbjct: 388 ttgctcccgttcttagaaagcttggtcggcgtggaagatgtcaggcc 342
>ref|XM_315066.2| Anopheles gambiae str. PEST ENSANGP00000011443 (ENSANGG00000008954), partial mRNA Length = 839 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 302 ttgacaattctccacaggcctttgggttccagttggacaatggcataccgatcgagagtt 361 |||| ||||| |||||||| ||||| | |||| |||| ||||| ||||| || ||||||| Sbjct: 455 ttgataattcaccacaggcatttggataccagctggaaaatggtataccaatagagagtt 514 Query: 362 ggttcg 367 |||||| Sbjct: 515 ggttcg 520
>emb|AL161548.2|ATCHRIV48 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 48 Length = 194143 Score = 46.1 bits (23), Expect = 0.099 Identities = 29/31 (93%) Strand = Plus / Minus Query: 131 tcatcttcacggctagtcaaagtatctatgc 161 ||||||||||||||||||| || |||||||| Sbjct: 15108 tcatcttcacggctagtcacagcatctatgc 15078
>emb|AL110123.1|ATF15J5 Arabidopsis thaliana DNA chromosome 4, BAC clone F15J5 (ESSA project) Length = 58427 Score = 46.1 bits (23), Expect = 0.099 Identities = 29/31 (93%) Strand = Plus / Minus Query: 131 tcatcttcacggctagtcaaagtatctatgc 161 ||||||||||||||||||| || |||||||| Sbjct: 34699 tcatcttcacggctagtcacagcatctatgc 34669
>emb|CT737180.5| M.truncatula DNA sequence from clone MTH2-117L19 on chromosome 3, complete sequence Length = 130239 Score = 46.1 bits (23), Expect = 0.099 Identities = 59/71 (83%) Strand = Plus / Plus Query: 121 tttgagataatcatcttcacggctagtcaaagtatctatgcagaacaactgcttaatgtt 180 |||||||| || || || || |||||||||||||| ||||| || ||||| || || || Sbjct: 29757 tttgagattattatatttaccgctagtcaaagtatttatgctgagcaactcctaaacgtg 29816 Query: 181 cttgatccgaa 191 ||||||||||| Sbjct: 29817 cttgatccgaa 29827 Score = 44.1 bits (22), Expect = 0.39 Identities = 43/50 (86%) Strand = Plus / Plus Query: 316 caggcctttgggttccagttggacaatggcataccgatcgagagttggtt 365 ||||| ||||| ||||| |||||||||| ||||| || ||||||||||| Sbjct: 31225 caggcatttggattccaagtggacaatggaataccaattgagagttggtt 31274 Score = 40.1 bits (20), Expect = 6.1 Identities = 56/68 (82%) Strand = Plus / Plus Query: 121 tttgagataatcatcttcacggctagtcaaagtatctatgcagaacaactgcttaatgtt 180 |||||||| || || || || |||||||||||||| ||||| || ||||| || ||| | Sbjct: 36072 tttgagattattatatttacagctagtcaaagtatttatgctgagcaactcctaaatttg 36131 Query: 181 cttgatcc 188 |||||||| Sbjct: 36132 cttgatcc 36139
>emb|AJ970220.1| Aedes aegypti retroposon Juan-A 35 Ae aeg, clone 6 Length = 399 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 81 tccatatctgaaagacttcctg 102 |||||||||||||||||||||| Sbjct: 352 tccatatctgaaagacttcctg 373
>ref|XM_779528.1| PREDICTED: Strongylocentrotus purpuratus similar to Exocyst complex component Sec15A (rSec15) (LOC579409), mRNA Length = 2364 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 atctgaaagacttcctggagag 107 |||||||||||||||||||||| Sbjct: 578 atctgaaagacttcctggagag 599
>gb|BC088917.1| Xenopus laevis hypothetical LOC496326, mRNA (cDNA clone MGC:84985 IMAGE:6325151), complete cds Length = 2747 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 409 ctggaaagcctggttggtgtgg 430 |||||||||||||||||||||| Sbjct: 527 ctggaaagcctggttggtgtgg 506
>emb|AL158071.23| Human DNA sequence from clone RP11-305L7 on chromosome 9 Contains four novel genes, a peptidylpolyl isomerase A (cyclophilin A) (PPIA) pseudogene, the 3' end of the AUH gene for AU RNA binding protein/enoyl-Coenzyme A hydratase and three CpG islands, complete sequence Length = 181623 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 acttcctggagagagtagcca 115 ||||||||||||||||||||| Sbjct: 123315 acttcctggagagagtagcca 123335
>gb|AC182736.3| Pan troglodytes BAC clone CH251-15A9 from chromosome 7, complete sequence Length = 181648 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 gaagattctgatttcactttc 33 ||||||||||||||||||||| Sbjct: 117745 gaagattctgatttcactttc 117725
>gb|DQ145275.1| Drosophila miranda neo-Y Tsf3 gene, partial sequence Length = 714 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 333 gttggacaatggcataccgatcga 356 ||||||||||| |||||||||||| Sbjct: 383 gttggacaatgtcataccgatcga 360
>gb|AC129573.16| Mus musculus chromosome 6, clone RP23-457B5, complete sequence Length = 178159 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 aactacttaaaggatctatc 266 |||||||||||||||||||| Sbjct: 111466 aactacttaaaggatctatc 111485
>gb|AC150845.11| Medicago truncatula clone mth2-150a2, complete sequence Length = 131577 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 ggtgaagattctgatttcac 29 |||||||||||||||||||| Sbjct: 91631 ggtgaagattctgatttcac 91612
>emb|AL449344.5| Human DNA sequence from clone RP11-280L17 on chromosome 9 Contains the 5' end of a novel gene, complete sequence Length = 178473 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gaagattctgatttcacttt 32 |||||||||||||||||||| Sbjct: 116196 gaagattctgatttcacttt 116177
>emb|AL121906.18|HSDJ63M2 Human DNA sequence from clone RP1-63M2 on chromosome 20 Contains the 3' end of the CBFA2T2 gene for runt domain core-binding factor alpha subunit 2, the C20orf134 gene, the E2F1 gene for E2F transcription factor 1, the APBA2BP gene for amyloid beta (A4) precursor protein-binding family A, member 2 protein, the C20orf144 gene and six CpG islands, complete sequence Length = 81914 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ggttccagttggacaatggc 345 |||||||||||||||||||| Sbjct: 33176 ggttccagttggacaatggc 33157
>gb|AC122546.14| Mus musculus chromosome 5, clone RP23-408A1, complete sequence Length = 191640 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 ttcctggaaagcctggttgg 425 |||||||||||||||||||| Sbjct: 56831 ttcctggaaagcctggttgg 56812
>gb|AC010269.6| Homo sapiens chromosome 5 clone CTC-485I21, complete sequence Length = 187084 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 aagattctgatttcactttc 33 |||||||||||||||||||| Sbjct: 157561 aagattctgatttcactttc 157580
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 292 gttgtcatagttgacaattctccacagg 319 ||||| |||||||||||| ||||||||| Sbjct: 25133505 gttgtaatagttgacaatactccacagg 25133532
>gb|AC080007.26| Homo sapiens 3 BAC RP11-529F4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168551 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 ggtgaagattctgatttcac 29 |||||||||||||||||||| Sbjct: 64423 ggtgaagattctgatttcac 64404
>gb|AC009313.4| Homo sapiens BAC clone RP11-440P12 from 2, complete sequence Length = 171881 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 atgcagaacaactgcttaat 177 |||||||||||||||||||| Sbjct: 109514 atgcagaacaactgcttaat 109495
>gb|AC091978.3| Homo sapiens chromosome 5 clone RP11-531A21, complete sequence Length = 192708 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 aagattctgatttcactttc 33 |||||||||||||||||||| Sbjct: 27436 aagattctgatttcactttc 27455
>dbj|AP002839.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0688A04 Length = 143969 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 292 gttgtcatagttgacaattctccacagg 319 ||||| |||||||||||| ||||||||| Sbjct: 133113 gttgtaatagttgacaatactccacagg 133140
>gb|L12401.1|HUMLAMIN03 Human nuclear lamin A and nuclear lamin C gene, exons 3-12 and complete alternative mRNAs Length = 6110 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tcctggagagagtagccagc 117 |||||||||||||||||||| Sbjct: 1462 tcctggagagagtagccagc 1481
>dbj|AK102504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095E13, full insert sequence Length = 2366 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 292 gttgtcatagttgacaattctccacagg 319 ||||| |||||||||||| ||||||||| Sbjct: 1922 gttgtaatagttgacaatactccacagg 1949
>dbj|AK063853.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D02, full insert sequence Length = 514 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 292 gttgtcatagttgacaattctccacagg 319 ||||| |||||||||||| ||||||||| Sbjct: 66 gttgtaatagttgacaatactccacagg 93
>emb|AL513424.3|HS109M15 Homo sapiens chromosome 9 BAC RP11-109M15, complete sequence Length = 184365 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gaagattctgatttcacttt 32 |||||||||||||||||||| Sbjct: 4685 gaagattctgatttcacttt 4704 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,084,882 Number of Sequences: 3902068 Number of extensions: 3084882 Number of successful extensions: 52957 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52858 Number of HSP's gapped (non-prelim): 97 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)