| Clone Name | bags30e22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450031.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4040 Score = 301 bits (152), Expect = 1e-78 Identities = 314/368 (85%) Strand = Plus / Plus Query: 251 gagcaaatgacagagcttgtgggcattcttcgacacagtgaatcacgtaggagggaactt 310 ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||| Sbjct: 3149 gagcaaatgacagagcttgtgaccatccttcgacacagcgaatcacgtagaagggaaacg 3208 Query: 311 gaaaagcagagcaagcagaaagagcagacagcccccatggctactacacctccgggaagc 370 ||||||||| ||||| | ||||||| |||| | || |||||| |||| |||| | Sbjct: 3209 gaaaagcagcttaagcaaagagagcaggcagctgtaactgccactacatctccaggaaac 3268 Query: 371 gtaaatggcaccgcgaagcacactgcagatgactccaacacgccactatcaccggtcgca 430 | |||||| | | ||||||| |||| |||||||||||||| ||| | ||||| || || Sbjct: 3269 ggaaatggttcagtgaagcactctgctgatgactccaacacaccattgtcaccagttgcg 3328 Query: 431 gttcccgcacagaagcagctgaagtactctgctggaattgtaaatagccccagcaaaggc 490 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3329 gtgcctgcacagaagcagctgaagtactctgctggaattgtaaatagccccagcaaaggg 3388 Query: 491 gtagctgcattgaacaaacaacaagtcaagctggttcctattgcgcagttgcctattggc 550 || ||||||| ||||||||||| | ||| |||||||||| || ||||||||| ||||| Sbjct: 3389 gttcctgcattcaacaaacaacatcttaagatggttcctatggcacagttgcctgttggc 3448 Query: 551 aagaaggtttcgatatcagggcaatcagggaaactttggagatggaaaaggagccaccac 610 ||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 3449 aagaaggtttcaatagcagggcaatcaggaaaactttggagatggaaaagaagccaccac 3508 Query: 611 cagtggct 618 |||||||| Sbjct: 3509 cagtggct 3516 Score = 287 bits (145), Expect = 2e-74 Identities = 226/253 (89%) Strand = Plus / Plus Query: 2 caagctaggatagcatcacttgagagcatggtcacaatctcttcaaatactcttgtcgcg 61 ||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || || Sbjct: 2912 caagctaggatagcatcacttgaaagcatggtgacaatatcttcaaatactctcgttgct 2971 Query: 62 atggcttctcaactttcagaggctgaagaaagagagcgtgctttctcggggcgtggccgt 121 |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| || Sbjct: 2972 atggcttctcaactctcagaagctgaagaaagagagcgtgcattctctgggcgtggtcgg 3031 Query: 122 tggaatcagttgcggtcaatgggagaagcaaagagtttgctgcagtacatctttagcgtt 181 |||||||||||||| ||||||| ||| ||||||||||| |||||||| || |||| |||| Sbjct: 3032 tggaatcagttgcgttcaatggcagaggcaaagagtttactgcagtatatatttaacgtt 3091 Query: 182 gctgcggatgccagatgtgaagtaagggaaaaagaaattgagattaaggaaatgaaggag 241 ||||| ||||| ||||| |||||||||| ||||| || ||||| ||||||||||||||| Sbjct: 3092 gctgcagatgcaagatgccaagtaagggagaaagagatggagatcaaggaaatgaaggag 3151 Query: 242 caaatgacagagc 254 ||||||||||||| Sbjct: 3152 caaatgacagagc 3164
>ref|XM_450032.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3607 Score = 301 bits (152), Expect = 1e-78 Identities = 314/368 (85%) Strand = Plus / Plus Query: 251 gagcaaatgacagagcttgtgggcattcttcgacacagtgaatcacgtaggagggaactt 310 ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||| Sbjct: 2508 gagcaaatgacagagcttgtgaccatccttcgacacagcgaatcacgtagaagggaaacg 2567 Query: 311 gaaaagcagagcaagcagaaagagcagacagcccccatggctactacacctccgggaagc 370 ||||||||| ||||| | ||||||| |||| | || |||||| |||| |||| | Sbjct: 2568 gaaaagcagcttaagcaaagagagcaggcagctgtaactgccactacatctccaggaaac 2627 Query: 371 gtaaatggcaccgcgaagcacactgcagatgactccaacacgccactatcaccggtcgca 430 | |||||| | | ||||||| |||| |||||||||||||| ||| | ||||| || || Sbjct: 2628 ggaaatggttcagtgaagcactctgctgatgactccaacacaccattgtcaccagttgcg 2687 Query: 431 gttcccgcacagaagcagctgaagtactctgctggaattgtaaatagccccagcaaaggc 490 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2688 gtgcctgcacagaagcagctgaagtactctgctggaattgtaaatagccccagcaaaggg 2747 Query: 491 gtagctgcattgaacaaacaacaagtcaagctggttcctattgcgcagttgcctattggc 550 || ||||||| ||||||||||| | ||| |||||||||| || ||||||||| ||||| Sbjct: 2748 gttcctgcattcaacaaacaacatcttaagatggttcctatggcacagttgcctgttggc 2807 Query: 551 aagaaggtttcgatatcagggcaatcagggaaactttggagatggaaaaggagccaccac 610 ||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 2808 aagaaggtttcaatagcagggcaatcaggaaaactttggagatggaaaagaagccaccac 2867 Query: 611 cagtggct 618 |||||||| Sbjct: 2868 cagtggct 2875 Score = 287 bits (145), Expect = 2e-74 Identities = 226/253 (89%) Strand = Plus / Plus Query: 2 caagctaggatagcatcacttgagagcatggtcacaatctcttcaaatactcttgtcgcg 61 ||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || || Sbjct: 2271 caagctaggatagcatcacttgaaagcatggtgacaatatcttcaaatactctcgttgct 2330 Query: 62 atggcttctcaactttcagaggctgaagaaagagagcgtgctttctcggggcgtggccgt 121 |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| || Sbjct: 2331 atggcttctcaactctcagaagctgaagaaagagagcgtgcattctctgggcgtggtcgg 2390 Query: 122 tggaatcagttgcggtcaatgggagaagcaaagagtttgctgcagtacatctttagcgtt 181 |||||||||||||| ||||||| ||| ||||||||||| |||||||| || |||| |||| Sbjct: 2391 tggaatcagttgcgttcaatggcagaggcaaagagtttactgcagtatatatttaacgtt 2450 Query: 182 gctgcggatgccagatgtgaagtaagggaaaaagaaattgagattaaggaaatgaaggag 241 ||||| ||||| ||||| |||||||||| ||||| || ||||| ||||||||||||||| Sbjct: 2451 gctgcagatgcaagatgccaagtaagggagaaagagatggagatcaaggaaatgaaggag 2510 Query: 242 caaatgacagagc 254 ||||||||||||| Sbjct: 2511 caaatgacagagc 2523
>dbj|AK100974.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143D04, full insert sequence Length = 4039 Score = 301 bits (152), Expect = 1e-78 Identities = 314/368 (85%) Strand = Plus / Plus Query: 251 gagcaaatgacagagcttgtgggcattcttcgacacagtgaatcacgtaggagggaactt 310 ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||| Sbjct: 3148 gagcaaatgacagagcttgtgaccatccttcgacacagcgaatcacgtagaagggaaacg 3207 Query: 311 gaaaagcagagcaagcagaaagagcagacagcccccatggctactacacctccgggaagc 370 ||||||||| ||||| | ||||||| |||| | || |||||| |||| |||| | Sbjct: 3208 gaaaagcagcttaagcaaagagagcaggcagctgtaactgccactacatctccaggaaac 3267 Query: 371 gtaaatggcaccgcgaagcacactgcagatgactccaacacgccactatcaccggtcgca 430 | |||||| | | ||||||| |||| |||||||||||||| ||| | ||||| || || Sbjct: 3268 ggaaatggttcagtgaagcactctgctgatgactccaacacaccattgtcaccagttgcg 3327 Query: 431 gttcccgcacagaagcagctgaagtactctgctggaattgtaaatagccccagcaaaggc 490 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3328 gtgcctgcacagaagcagctgaagtactctgctggaattgtaaatagccccagcaaaggg 3387 Query: 491 gtagctgcattgaacaaacaacaagtcaagctggttcctattgcgcagttgcctattggc 550 || ||||||| ||||||||||| | ||| |||||||||| || ||||||||| ||||| Sbjct: 3388 gttcctgcattcaacaaacaacatcttaagatggttcctatggcacagttgcctgttggc 3447 Query: 551 aagaaggtttcgatatcagggcaatcagggaaactttggagatggaaaaggagccaccac 610 ||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 3448 aagaaggtttcaatagcagggcaatcaggaaaactttggagatggaaaagaagccaccac 3507 Query: 611 cagtggct 618 |||||||| Sbjct: 3508 cagtggct 3515 Score = 272 bits (137), Expect = 1e-69 Identities = 225/253 (88%), Gaps = 1/253 (0%) Strand = Plus / Plus Query: 2 caagctaggatagcatcacttgagagcatggtcacaatctcttcaaatactcttgtcgcg 61 ||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || || Sbjct: 2912 caagctaggatagcatcacttgaaagcatggtgacaatatcttcaaatactctcgttgct 2971 Query: 62 atggcttctcaactttcagaggctgaagaaagagagcgtgctttctcggggcgtggccgt 121 |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| || Sbjct: 2972 atggcttctcaactctcagaagctgaagaaagagagcgtgcattctctgggcgtggtcgg 3031 Query: 122 tggaatcagttgcggtcaatgggagaagcaaagagtttgctgcagtacatctttagcgtt 181 |||||||||||||| ||||||| ||| ||||||||||| |||||||| || |||| |||| Sbjct: 3032 tggaatcagttgcgttcaatggcagaggcaaagagtttactgcagtatatatttaacgtt 3091 Query: 182 gctgcggatgccagatgtgaagtaagggaaaaagaaattgagattaaggaaatgaaggag 241 ||||| ||||| ||||| |||||||||| ||||| || ||||| ||||||||| ||||| Sbjct: 3092 gctgcagatgcaagatgccaagtaagggagaaagagatggagatcaaggaaatg-aggag 3150 Query: 242 caaatgacagagc 254 ||||||||||||| Sbjct: 3151 caaatgacagagc 3163
>dbj|AK067738.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119B11, full insert sequence Length = 3606 Score = 301 bits (152), Expect = 1e-78 Identities = 314/368 (85%) Strand = Plus / Plus Query: 251 gagcaaatgacagagcttgtgggcattcttcgacacagtgaatcacgtaggagggaactt 310 ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||| Sbjct: 2507 gagcaaatgacagagcttgtgaccatccttcgacacagcgaatcacgtagaagggaaacg 2566 Query: 311 gaaaagcagagcaagcagaaagagcagacagcccccatggctactacacctccgggaagc 370 ||||||||| ||||| | ||||||| |||| | || |||||| |||| |||| | Sbjct: 2567 gaaaagcagcttaagcaaagagagcaggcagctgtaactgccactacatctccaggaaac 2626 Query: 371 gtaaatggcaccgcgaagcacactgcagatgactccaacacgccactatcaccggtcgca 430 | |||||| | | ||||||| |||| |||||||||||||| ||| | ||||| || || Sbjct: 2627 ggaaatggttcagtgaagcactctgctgatgactccaacacaccattgtcaccagttgcg 2686 Query: 431 gttcccgcacagaagcagctgaagtactctgctggaattgtaaatagccccagcaaaggc 490 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2687 gtgcctgcacagaagcagctgaagtactctgctggaattgtaaatagccccagcaaaggg 2746 Query: 491 gtagctgcattgaacaaacaacaagtcaagctggttcctattgcgcagttgcctattggc 550 || ||||||| ||||||||||| | ||| |||||||||| || ||||||||| ||||| Sbjct: 2747 gttcctgcattcaacaaacaacatcttaagatggttcctatggcacagttgcctgttggc 2806 Query: 551 aagaaggtttcgatatcagggcaatcagggaaactttggagatggaaaaggagccaccac 610 ||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 2807 aagaaggtttcaatagcagggcaatcaggaaaactttggagatggaaaagaagccaccac 2866 Query: 611 cagtggct 618 |||||||| Sbjct: 2867 cagtggct 2874 Score = 287 bits (145), Expect = 2e-74 Identities = 226/253 (89%) Strand = Plus / Plus Query: 2 caagctaggatagcatcacttgagagcatggtcacaatctcttcaaatactcttgtcgcg 61 ||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || || Sbjct: 2270 caagctaggatagcatcacttgaaagcatggtgacaatatcttcaaatactctcgttgct 2329 Query: 62 atggcttctcaactttcagaggctgaagaaagagagcgtgctttctcggggcgtggccgt 121 |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| || Sbjct: 2330 atggcttctcaactctcagaagctgaagaaagagagcgtgcattctctgggcgtggtcgg 2389 Query: 122 tggaatcagttgcggtcaatgggagaagcaaagagtttgctgcagtacatctttagcgtt 181 |||||||||||||| ||||||| ||| ||||||||||| |||||||| || |||| |||| Sbjct: 2390 tggaatcagttgcgttcaatggcagaggcaaagagtttactgcagtatatatttaacgtt 2449 Query: 182 gctgcggatgccagatgtgaagtaagggaaaaagaaattgagattaaggaaatgaaggag 241 ||||| ||||| ||||| |||||||||| ||||| || ||||| ||||||||||||||| Sbjct: 2450 gctgcagatgcaagatgccaagtaagggagaaagagatggagatcaaggaaatgaaggag 2509 Query: 242 caaatgacagagc 254 ||||||||||||| Sbjct: 2510 caaatgacagagc 2522
>dbj|AK058665.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-G08, full insert sequence Length = 1886 Score = 301 bits (152), Expect = 1e-78 Identities = 314/368 (85%) Strand = Plus / Plus Query: 251 gagcaaatgacagagcttgtgggcattcttcgacacagtgaatcacgtaggagggaactt 310 ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||| Sbjct: 1244 gagcaaatgacagagcttgtgaccatccttcgacacagcgaatcacgtagaagggaaacg 1303 Query: 311 gaaaagcagagcaagcagaaagagcagacagcccccatggctactacacctccgggaagc 370 ||||||||| ||||| | ||||||| |||| | || |||||| |||| |||| | Sbjct: 1304 gaaaagcagcttaagcaaagagagcaggcagctgtaactgccactacatctccaggaaac 1363 Query: 371 gtaaatggcaccgcgaagcacactgcagatgactccaacacgccactatcaccggtcgca 430 | |||||| | | ||||||| |||| |||||||||||||| ||| | ||||| || || Sbjct: 1364 ggaaatggttcagtgaagcactctgctgatgactccaacacaccattgtcaccagttgcg 1423 Query: 431 gttcccgcacagaagcagctgaagtactctgctggaattgtaaatagccccagcaaaggc 490 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1424 gtgcctgcacagaagcagctgaagtactctgctggaattgtaaatagccccagcaaaggg 1483 Query: 491 gtagctgcattgaacaaacaacaagtcaagctggttcctattgcgcagttgcctattggc 550 || ||||||| ||||||||||| | ||| |||||||||| || ||||||||| ||||| Sbjct: 1484 gttcctgcattcaacaaacaacatcttaagatggttcctatggcacagttgcctgttggc 1543 Query: 551 aagaaggtttcgatatcagggcaatcagggaaactttggagatggaaaaggagccaccac 610 ||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 1544 aagaaggtttcaatagcagggcaatcaggaaaactttggagatggaaaagaagccaccac 1603 Query: 611 cagtggct 618 |||||||| Sbjct: 1604 cagtggct 1611 Score = 287 bits (145), Expect = 2e-74 Identities = 226/253 (89%) Strand = Plus / Plus Query: 2 caagctaggatagcatcacttgagagcatggtcacaatctcttcaaatactcttgtcgcg 61 ||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || || Sbjct: 1007 caagctaggatagcatcacttgaaagcatggtgacaatatcttcaaatactctcgttgct 1066 Query: 62 atggcttctcaactttcagaggctgaagaaagagagcgtgctttctcggggcgtggccgt 121 |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| || Sbjct: 1067 atggcttctcaactctcagaagctgaagaaagagagcgtgcattctctgggcgtggtcgg 1126 Query: 122 tggaatcagttgcggtcaatgggagaagcaaagagtttgctgcagtacatctttagcgtt 181 |||||||||||||| ||||||| ||| ||||||||||| |||||||| || |||| |||| Sbjct: 1127 tggaatcagttgcgttcaatggcagaggcaaagagtttactgcagtatatatttaacgtt 1186 Query: 182 gctgcggatgccagatgtgaagtaagggaaaaagaaattgagattaaggaaatgaaggag 241 ||||| ||||| ||||| |||||||||| ||||| || ||||| ||||||||||||||| Sbjct: 1187 gctgcagatgcaagatgccaagtaagggagaaagagatggagatcaaggaaatgaaggag 1246 Query: 242 caaatgacagagc 254 ||||||||||||| Sbjct: 1247 caaatgacagagc 1259
>gb|AY104763.1| Zea mays PCO069017 mRNA sequence Length = 1027 Score = 256 bits (129), Expect = 8e-65 Identities = 222/253 (87%) Strand = Plus / Plus Query: 2 caagctaggatagcatcacttgagagcatggtcacaatctcttcaaatactcttgtcgcg 61 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || Sbjct: 348 caagctaggatagcatcacttgagagcatggtgacaatctcttcaaacactcttgttgca 407 Query: 62 atggcttctcaactttcagaggctgaagaaagagagcgtgctttctcggggcgtggccgt 121 |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||| | ||| Sbjct: 408 atggcttctcaactctcagaagctgaagaaagagagcgtgccttctctgggcgtagtcgt 467 Query: 122 tggaatcagttgcggtcaatgggagaagcaaagagtttgctgcagtacatctttagcgtt 181 |||||||| ||||| |||||||| || |||||||| || ||||| || |||||| ||| Sbjct: 468 tggaatcaattgcgatcaatgggggaggcaaagagcttactgcaatatgtctttaatgtt 527 Query: 182 gctgcggatgccagatgtgaagtaagggaaaaagaaattgagattaaggaaatgaaggag 241 ||||| ||||||||||| |||||| ||| || ||| | ||||| |||||||||||||| Sbjct: 528 gctgctgatgccagatgccaagtaaaggagaaggaagtggagatcaaggaaatgaaggaa 587 Query: 242 caaatgacagagc 254 ||||||||||||| Sbjct: 588 caaatgacagagc 600 Score = 232 bits (117), Expect = 1e-57 Identities = 303/365 (83%) Strand = Plus / Plus Query: 254 caaatgacagagcttgtgggcattcttcgacacagtgaatcacgtaggagggaacttgaa 313 |||||||||||||| ||||||||||||||||||||||||||||| || || ||| | || Sbjct: 588 caaatgacagagctggtgggcattcttcgacacagtgaatcacgcagaagagaaatggag 647 Query: 314 aagcagagcaagcagaaagagcagacagcccccatggctactacacctccgggaagcgta 373 |||||| |||||| | ||| |||||| | || ||||| |||||||||||| ||| | | Sbjct: 648 aagcagctcaagcaaagagaacagacaactccaatggccactacacctccgaaaagtgga 707 Query: 374 aatggcaccgcgaagcacactgcagatgactccaacacgccactatcaccggtcgcagtt 433 |||||||| |||||||| |||| |||||| ||||||| ||||| || || ||||| ||| Sbjct: 708 aatggcacgacgaagcactctgctgatgaccccaacacaccactgtcccctgtcgccgtt 767 Query: 434 cccgcacagaagcagctgaagtactctgctggaattgtaaatagccccagcaaaggcgta 493 || |||||||||||||| ||||| |||||||||||||||||||||||||||||||| || Sbjct: 768 cctgcacagaagcagctcaagtattctgctggaattgtaaatagccccagcaaaggagtt 827 Query: 494 gctgcattgaacaaacaacaagtcaagctggttcctattgcgcagttgcctattggcaag 553 ||||| | || ||| | ||| | ||| ||||||| ||||| |||||| || || ||| Sbjct: 828 gctgcgataaaaaaagagcaacttaagatggttccaattgcacagttgtctgcggggaag 887 Query: 554 aaggtttcgatatcagggcaatcagggaaactttggagatggaaaaggagccaccaccag 613 | ||||| ||| ||||||| ||||| || || ||||| |||||||| ||||| |||||| Sbjct: 888 agagtttcaatagcagggcattcaggaaagctctggaggtggaaaagaagccatcaccag 947 Query: 614 tggct 618 ||||| Sbjct: 948 tggct 952
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 220 bits (111), Expect = 4e-54 Identities = 171/191 (89%) Strand = Plus / Plus Query: 2 caagctaggatagcatcacttgagagcatggtcacaatctcttcaaatactcttgtcgcg 61 ||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || || Sbjct: 1112427 caagctaggatagcatcacttgaaagcatggtgacaatatcttcaaatactctcgttgct 1112486 Query: 62 atggcttctcaactttcagaggctgaagaaagagagcgtgctttctcggggcgtggccgt 121 |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| || Sbjct: 1112487 atggcttctcaactctcagaagctgaagaaagagagcgtgcattctctgggcgtggtcgg 1112546 Query: 122 tggaatcagttgcggtcaatgggagaagcaaagagtttgctgcagtacatctttagcgtt 181 |||||||||||||| ||||||| ||| ||||||||||| |||||||| || |||| |||| Sbjct: 1112547 tggaatcagttgcgttcaatggcagaggcaaagagtttactgcagtatatatttaacgtt 1112606 Query: 182 gctgcggatgc 192 ||||| ||||| Sbjct: 1112607 gctgcagatgc 1112617 Score = 145 bits (73), Expect = 2e-31 Identities = 115/129 (89%) Strand = Plus / Plus Query: 385 gaagcacactgcagatgactccaacacgccactatcaccggtcgcagttcccgcacagaa 444 ||||||| |||| |||||||||||||| ||| | ||||| || || || || |||||||| Sbjct: 1113492 gaagcactctgctgatgactccaacacaccattgtcaccagttgcggtgcctgcacagaa 1113551 Query: 445 gcagctgaagtactctgctggaattgtaaatagccccagcaaaggcgtagctgcattgaa 504 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || Sbjct: 1113552 gcagctgaagtactctgctggaattgtaaatagccccagcaaaggggttcctgcattcaa 1113611 Query: 505 caaacaaca 513 ||||||||| Sbjct: 1113612 caaacaaca 1113620 Score = 137 bits (69), Expect = 5e-29 Identities = 90/97 (92%) Strand = Plus / Plus Query: 522 tggttcctattgcgcagttgcctattggcaagaaggtttcgatatcagggcaatcaggga 581 |||||||||| || ||||||||| |||||||||||||||| ||| ||||||||||||| | Sbjct: 1113704 tggttcctatggcacagttgcctgttggcaagaaggtttcaatagcagggcaatcaggaa 1113763 Query: 582 aactttggagatggaaaaggagccaccaccagtggct 618 ||||||||||||||||||| ||||||||||||||||| Sbjct: 1113764 aactttggagatggaaaagaagccaccaccagtggct 1113800 Score = 75.8 bits (38), Expect = 2e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 201 aagtaagggaaaaagaaattgagattaaggaaatgaaggagcaaatgacagagc 254 |||||||||| ||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 1113007 aagtaagggagaaagagatggagatcaaggaaatgaaggagcaaatgacagagc 1113060 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 251 gagcaaatgacagagcttgtgggcattcttcgacacagtgaatcacgtaggagggaa 307 ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||| Sbjct: 1113045 gagcaaatgacagagcttgtgaccatccttcgacacagcgaatcacgtagaagggaa 1113101
>dbj|AP005860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1134_E08 Length = 153002 Score = 220 bits (111), Expect = 4e-54 Identities = 171/191 (89%) Strand = Plus / Plus Query: 2 caagctaggatagcatcacttgagagcatggtcacaatctcttcaaatactcttgtcgcg 61 ||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || || Sbjct: 150120 caagctaggatagcatcacttgaaagcatggtgacaatatcttcaaatactctcgttgct 150179 Query: 62 atggcttctcaactttcagaggctgaagaaagagagcgtgctttctcggggcgtggccgt 121 |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| || Sbjct: 150180 atggcttctcaactctcagaagctgaagaaagagagcgtgcattctctgggcgtggtcgg 150239 Query: 122 tggaatcagttgcggtcaatgggagaagcaaagagtttgctgcagtacatctttagcgtt 181 |||||||||||||| ||||||| ||| ||||||||||| |||||||| || |||| |||| Sbjct: 150240 tggaatcagttgcgttcaatggcagaggcaaagagtttactgcagtatatatttaacgtt 150299 Query: 182 gctgcggatgc 192 ||||| ||||| Sbjct: 150300 gctgcagatgc 150310 Score = 145 bits (73), Expect = 2e-31 Identities = 115/129 (89%) Strand = Plus / Plus Query: 385 gaagcacactgcagatgactccaacacgccactatcaccggtcgcagttcccgcacagaa 444 ||||||| |||| |||||||||||||| ||| | ||||| || || || || |||||||| Sbjct: 151185 gaagcactctgctgatgactccaacacaccattgtcaccagttgcggtgcctgcacagaa 151244 Query: 445 gcagctgaagtactctgctggaattgtaaatagccccagcaaaggcgtagctgcattgaa 504 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || Sbjct: 151245 gcagctgaagtactctgctggaattgtaaatagccccagcaaaggggttcctgcattcaa 151304 Query: 505 caaacaaca 513 ||||||||| Sbjct: 151305 caaacaaca 151313 Score = 137 bits (69), Expect = 5e-29 Identities = 90/97 (92%) Strand = Plus / Plus Query: 522 tggttcctattgcgcagttgcctattggcaagaaggtttcgatatcagggcaatcaggga 581 |||||||||| || ||||||||| |||||||||||||||| ||| ||||||||||||| | Sbjct: 151397 tggttcctatggcacagttgcctgttggcaagaaggtttcaatagcagggcaatcaggaa 151456 Query: 582 aactttggagatggaaaaggagccaccaccagtggct 618 ||||||||||||||||||| ||||||||||||||||| Sbjct: 151457 aactttggagatggaaaagaagccaccaccagtggct 151493 Score = 75.8 bits (38), Expect = 2e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 201 aagtaagggaaaaagaaattgagattaaggaaatgaaggagcaaatgacagagc 254 |||||||||| ||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 150700 aagtaagggagaaagagatggagatcaaggaaatgaaggagcaaatgacagagc 150753 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 251 gagcaaatgacagagcttgtgggcattcttcgacacagtgaatcacgtaggagggaa 307 ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||| Sbjct: 150738 gagcaaatgacagagcttgtgaccatccttcgacacagcgaatcacgtagaagggaa 150794
>dbj|AP005569.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1310_F05 Length = 107916 Score = 220 bits (111), Expect = 4e-54 Identities = 171/191 (89%) Strand = Plus / Plus Query: 2 caagctaggatagcatcacttgagagcatggtcacaatctcttcaaatactcttgtcgcg 61 ||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || || Sbjct: 1021 caagctaggatagcatcacttgaaagcatggtgacaatatcttcaaatactctcgttgct 1080 Query: 62 atggcttctcaactttcagaggctgaagaaagagagcgtgctttctcggggcgtggccgt 121 |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| || Sbjct: 1081 atggcttctcaactctcagaagctgaagaaagagagcgtgcattctctgggcgtggtcgg 1140 Query: 122 tggaatcagttgcggtcaatgggagaagcaaagagtttgctgcagtacatctttagcgtt 181 |||||||||||||| ||||||| ||| ||||||||||| |||||||| || |||| |||| Sbjct: 1141 tggaatcagttgcgttcaatggcagaggcaaagagtttactgcagtatatatttaacgtt 1200 Query: 182 gctgcggatgc 192 ||||| ||||| Sbjct: 1201 gctgcagatgc 1211 Score = 145 bits (73), Expect = 2e-31 Identities = 115/129 (89%) Strand = Plus / Plus Query: 385 gaagcacactgcagatgactccaacacgccactatcaccggtcgcagttcccgcacagaa 444 ||||||| |||| |||||||||||||| ||| | ||||| || || || || |||||||| Sbjct: 2086 gaagcactctgctgatgactccaacacaccattgtcaccagttgcggtgcctgcacagaa 2145 Query: 445 gcagctgaagtactctgctggaattgtaaatagccccagcaaaggcgtagctgcattgaa 504 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || Sbjct: 2146 gcagctgaagtactctgctggaattgtaaatagccccagcaaaggggttcctgcattcaa 2205 Query: 505 caaacaaca 513 ||||||||| Sbjct: 2206 caaacaaca 2214 Score = 137 bits (69), Expect = 5e-29 Identities = 90/97 (92%) Strand = Plus / Plus Query: 522 tggttcctattgcgcagttgcctattggcaagaaggtttcgatatcagggcaatcaggga 581 |||||||||| || ||||||||| |||||||||||||||| ||| ||||||||||||| | Sbjct: 2298 tggttcctatggcacagttgcctgttggcaagaaggtttcaatagcagggcaatcaggaa 2357 Query: 582 aactttggagatggaaaaggagccaccaccagtggct 618 ||||||||||||||||||| ||||||||||||||||| Sbjct: 2358 aactttggagatggaaaagaagccaccaccagtggct 2394 Score = 75.8 bits (38), Expect = 2e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 201 aagtaagggaaaaagaaattgagattaaggaaatgaaggagcaaatgacagagc 254 |||||||||| ||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 1601 aagtaagggagaaagagatggagatcaaggaaatgaaggagcaaatgacagagc 1654 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 251 gagcaaatgacagagcttgtgggcattcttcgacacagtgaatcacgtaggagggaa 307 ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||| Sbjct: 1639 gagcaaatgacagagcttgtgaccatccttcgacacagcgaatcacgtagaagggaa 1695
>ref|NM_180820.1| Arabidopsis thaliana FRA1 (FRAGILE FIBER 1); microtubule motor AT5G47820 (FRA1) transcript variant AT5G47820.1 mRNA, complete cds Length = 3288 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Plus Query: 59 gcgatggcttctcaactttcagaggctgaagaaagagagcgtgctttctcggggcgtggc 118 |||||||| || |||||||| ||||| |||||| | ||||||||||| | ||||| Sbjct: 2474 gcgatggcatcacaactttctgaggcagaagaacgggagcgtgcttttacaaaccgtggt 2533 Query: 119 cgttggaatcagttgcggtcaatgggagaagcaaagagtttgctgcagta 168 || ||||| ||| | || ||||||||||| ||||||| |||||| ||||| Sbjct: 2534 cgctggaaccagctacgatcaatgggagaggcaaagaatttgcttcagta 2583
>ref|NM_124156.3| Arabidopsis thaliana FRA1 (FRAGILE FIBER 1); microtubule motor AT5G47820 (FRA1) transcript variant AT5G47820.2 mRNA, complete cds Length = 3564 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Plus Query: 59 gcgatggcttctcaactttcagaggctgaagaaagagagcgtgctttctcggggcgtggc 118 |||||||| || |||||||| ||||| |||||| | ||||||||||| | ||||| Sbjct: 2474 gcgatggcatcacaactttctgaggcagaagaacgggagcgtgcttttacaaaccgtggt 2533 Query: 119 cgttggaatcagttgcggtcaatgggagaagcaaagagtttgctgcagta 168 || ||||| ||| | || ||||||||||| ||||||| |||||| ||||| Sbjct: 2534 cgctggaaccagctacgatcaatgggagaggcaaagaatttgcttcagta 2583
>gb|AY158084.1| Arabidopsis thaliana kinesin-like protein (FRA1) gene, complete cds Length = 8025 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Plus Query: 59 gcgatggcttctcaactttcagaggctgaagaaagagagcgtgctttctcggggcgtggc 118 |||||||| || |||||||| ||||| |||||| | ||||||||||| | ||||| Sbjct: 6295 gcgatggcatcacaactttctgaggcagaagaacgggagcgtgcttttacaaaccgtggt 6354 Query: 119 cgttggaatcagttgcggtcaatgggagaagcaaagagtttgctgcagta 168 || ||||| ||| | || ||||||||||| ||||||| |||||| ||||| Sbjct: 6355 cgctggaaccagctacgatcaatgggagaggcaaagaatttgcttcagta 6404
>gb|AY158083.1| Arabidopsis thaliana kinesin-like protein (FRA1) mRNA, complete cds Length = 3288 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Plus Query: 59 gcgatggcttctcaactttcagaggctgaagaaagagagcgtgctttctcggggcgtggc 118 |||||||| || |||||||| ||||| |||||| | ||||||||||| | ||||| Sbjct: 2474 gcgatggcatcacaactttctgaggcagaagaacgggagcgtgcttttacaaaccgtggt 2533 Query: 119 cgttggaatcagttgcggtcaatgggagaagcaaagagtttgctgcagta 168 || ||||| ||| | || ||||||||||| ||||||| |||||| ||||| Sbjct: 2534 cgctggaaccagctacgatcaatgggagaggcaaagaatttgcttcagta 2583
>dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCA23 Length = 82503 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Plus Query: 59 gcgatggcttctcaactttcagaggctgaagaaagagagcgtgctttctcggggcgtggc 118 |||||||| || |||||||| ||||| |||||| | ||||||||||| | ||||| Sbjct: 48532 gcgatggcatcacaactttctgaggcagaagaacgggagcgtgcttttacaaaccgtggt 48591 Query: 119 cgttggaatcagttgcggtcaatgggagaagcaaagagtttgctgcagta 168 || ||||| ||| | || ||||||||||| ||||||| |||||| ||||| Sbjct: 48592 cgctggaaccagctacgatcaatgggagaggcaaagaatttgcttcagta 48641
>gb|AC005409.1| Homo sapiens chromosome 12 clone 14951, complete sequence Length = 177364 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 588 ggagatggaaaaggagccacca 609 |||||||||||||||||||||| Sbjct: 84216 ggagatggaaaaggagccacca 84195
>gb|AC063950.37| Homo sapiens 12 BAC RP11-511H9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174231 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 588 ggagatggaaaaggagccacca 609 |||||||||||||||||||||| Sbjct: 77887 ggagatggaaaaggagccacca 77866
>dbj|AB249714.1| Bos taurus DNA for bitter taste receptor, complete cds, clone: Bota-T2R12 Length = 930 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 322 caagcagaaagagcagacagccccca 347 ||||||||||||| |||||||||||| Sbjct: 429 caagcagaaagagaagacagccccca 404
>gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, complete sequence Length = 154765 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 ggaaactttggagatggaaaa 599 ||||||||||||||||||||| Sbjct: 123295 ggaaactttggagatggaaaa 123315
>gb|AC147477.1| Pan troglodytes BAC clone CH251-483E9 from Y, complete sequence Length = 213500 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 aaaagcagagcaagcagaaagagca 336 |||||||||| |||||||||||||| Sbjct: 63769 aaaagcagaggaagcagaaagagca 63745
>gb|AC137824.25| Medicago truncatula clone mth2-10l10, complete sequence Length = 114536 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 122 tggaatcagttgcggtcaatgggagaagc 150 ||||| |||||||| |||||||||||||| Sbjct: 112635 tggaaccagttgcgctcaatgggagaagc 112663 Score = 40.1 bits (20), Expect = 8.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 53 cttgtcgcgatggcttctcaactttcagaggctgaagaaagaga 96 ||||| || |||||||||||||| || ||||| |||||| |||| Sbjct: 112566 cttgtggcaatggcttctcaactatctgaggcagaagaacgaga 112609
>emb|AL354767.8| Human DNA sequence from clone RP11-52P6 on chromosome X, complete sequence Length = 34467 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 211 aaaagaaattgagattaaggaaatg 235 ||||||||||||||| ||||||||| Sbjct: 31743 aaaagaaattgagataaaggaaatg 31767
>emb|AL136360.21| Human DNA sequence from clone RP11-317B7 on chromosome 4, complete sequence Length = 103727 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 gcttctcaactttcagaggctgaag 89 |||| |||||||||||||||||||| Sbjct: 75894 gcttttcaactttcagaggctgaag 75918
>emb|AL132768.15|HSJ469A13 Human DNA sequence from clone RP3-469A13 on chromosome 20 Contains the 3' end of a novel gene, the C20orf172 gene for chromosome 20 open reading frame 172, the 5' end of the NDRG3 gene for NDRG family member 3 (N-myc downstream-regulated gene 3, FLJ13556) and four CpG islands, complete sequence Length = 123829 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 aggaaatgaaggagcaaatga 248 ||||||||||||||||||||| Sbjct: 103547 aggaaatgaaggagcaaatga 103567
>dbj|BS000540.1| Pan troglodytes chromosome Y clone:PTB-144P03, complete sequences Length = 171424 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 312 aaaagcagagcaagcagaaagagca 336 |||||||||| |||||||||||||| Sbjct: 57275 aaaagcagaggaagcagaaagagca 57299
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 aaaagcagagcaagcagaaagagca 336 |||||||||| |||||||||||||| Sbjct: 14820770 aaaagcagaggaagcagaaagagca 14820746
>gb|AC158240.5| Pan troglodytes BAC clone CH251-542M19 from chromosome unknown, complete sequence Length = 217064 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 313 aaagcagagcaagcagaaagagcag 337 ||||||||| ||||||||||||||| Sbjct: 122990 aaagcagaggaagcagaaagagcag 122966
>gb|AC018695.6| Homo sapiens BAC clone RP11-568J23 from 16, complete sequence Length = 211001 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 tgaagtaagggaaaaagaaat 219 ||||||||||||||||||||| Sbjct: 137174 tgaagtaagggaaaaagaaat 137154
>gb|AC150207.2| Medicago truncatula chromosome 2 BAC clone mte1-29a5, complete sequence Length = 124676 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 122 tggaatcagttgcggtcaatgggagaagc 150 ||||| |||||||| |||||||||||||| Sbjct: 120443 tggaaccagttgcgctcaatgggagaagc 120415 Score = 40.1 bits (20), Expect = 8.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 53 cttgtcgcgatggcttctcaactttcagaggctgaagaaagaga 96 ||||| || |||||||||||||| || ||||| |||||| |||| Sbjct: 120512 cttgtggcaatggcttctcaactatctgaggcagaagaacgaga 120469 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 587 tggagatggaaaaggagccaccaccagtggct 618 ||||| |||||||||||||| || |||||||| Sbjct: 118523 tggaggtggaaaaggagccatcatcagtggct 118492
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 201 aagtaagggaaaaagaaattgagat 225 |||||||||||||||||||| |||| Sbjct: 26035754 aagtaagggaaaaagaaattaagat 26035730
>gb|DQ060036.1| Homo sapiens polymerase (DNA directed) nu (POLN) gene, complete cds Length = 161222 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 gcttctcaactttcagaggctgaag 89 |||| |||||||||||||||||||| Sbjct: 133434 gcttttcaactttcagaggctgaag 133458
>gb|AC009955.4|AC009955 Homo sapiens BAC clone RP11-256I23 from 2, complete sequence Length = 135033 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 313 aaagcagagcaagcagaaagagcag 337 ||||||||| ||||||||||||||| Sbjct: 55538 aaagcagaggaagcagaaagagcag 55514
>gb|AC009489.3|AC009489 Homo sapiens BAC clone RP11-339J4 from Y, complete sequence Length = 100953 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 312 aaaagcagagcaagcagaaagagca 336 |||||||||| |||||||||||||| Sbjct: 27157 aaaagcagaggaagcagaaagagca 27181
>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1186_G01 Length = 112077 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 201 aagtaagggaaaaagaaattgagat 225 |||||||||||||||||||| |||| Sbjct: 71315 aagtaagggaaaaagaaattaagat 71291
>dbj|AP003865.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1081_B12 Length = 124741 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 201 aagtaagggaaaaagaaattgagat 225 |||||||||||||||||||| |||| Sbjct: 120631 aagtaagggaaaaagaaattaagat 120607
>gb|AC113278.15| Mus musculus chromosome 3, clone RP23-387I7, complete sequence Length = 180681 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 512 caagtcaagctggttcctatt 532 ||||||||||||||||||||| Sbjct: 155044 caagtcaagctggttcctatt 155024
>gb|AC113293.16| Mus musculus chromosome 3, clone RP23-418O15, complete sequence Length = 179590 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 512 caagtcaagctggttcctatt 532 ||||||||||||||||||||| Sbjct: 161796 caagtcaagctggttcctatt 161816
>gb|AC005208.1|AC005208 Homo sapiens chromosome 17, clone hRPK.1064_E_11, complete sequence Length = 123211 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 agggaacttgaaaagcagagc 322 ||||||||||||||||||||| Sbjct: 14656 agggaacttgaaaagcagagc 14676
>gb|AC004562.1|AC004562 Homo sapiens chromosome 17, clone hRPC.34_M_24, complete sequence Length = 133925 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 agggaacttgaaaagcagagc 322 ||||||||||||||||||||| Sbjct: 125050 agggaacttgaaaagcagagc 125070
>emb|Z49862.1|HSL58B6 Human DNA sequence from clone LA04NC01-58B6 on chromosome 4, complete sequence Length = 28142 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 gcttctcaactttcagaggctgaag 89 |||| |||||||||||||||||||| Sbjct: 18064 gcttttcaactttcagaggctgaag 18088
>gb|AC093473.6| Mus musculus chromosome 5, clone RP23-54H12, complete sequence Length = 208876 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 236 aaggagcaaatgacagagcaaatg 259 ||||| |||||||||||||||||| Sbjct: 147026 aaggaccaaatgacagagcaaatg 147049
>gb|AC127266.4| Mus musculus BAC clone RP24-347B12 from chromosome 5, complete sequence Length = 185232 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 236 aaggagcaaatgacagagcaaatg 259 ||||| |||||||||||||||||| Sbjct: 79927 aaggaccaaatgacagagcaaatg 79950
>ref|XM_588284.2| PREDICTED: Bos taurus similar to chromosome 14 open reading frame 169 (LOC511031), mRNA Length = 2391 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 586 ttggagatggaaaaggagcc 605 |||||||||||||||||||| Sbjct: 2123 ttggagatggaaaaggagcc 2142
>gb|AC147885.2| Xenopus tropicalis clone CH216-12C9, complete sequence Length = 222162 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 tgaagtaagggaaaaagaaa 218 |||||||||||||||||||| Sbjct: 214379 tgaagtaagggaaaaagaaa 214398
>gb|AC153972.6| Mus musculus 10 BAC RP24-383P4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 182933 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 taagggaaaaagaaattgag 223 |||||||||||||||||||| Sbjct: 46753 taagggaaaaagaaattgag 46772
>gb|AC183540.2| Pan troglodytes BAC clone CH251-324O24 from chromosome 7, complete sequence Length = 176962 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 aagggaaaaagaaattgaga 224 |||||||||||||||||||| Sbjct: 13189 aagggaaaaagaaattgaga 13208
>gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete genome Length = 686194 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gaaaaagaaattgagattaa 228 |||||||||||||||||||| Sbjct: 186287 gaaaaagaaattgagattaa 186306
>emb|CR376747.28| Zebrafish DNA sequence from clone CH211-248D20 in linkage group 8, complete sequence Length = 153394 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 ttgcctattggcaagaaggt 558 |||||||||||||||||||| Sbjct: 20043 ttgcctattggcaagaaggt 20062
>emb|CR627491.15| Zebrafish DNA sequence from clone DKEY-163B6 in linkage group 8, complete sequence Length = 243757 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 ttgcctattggcaagaaggt 558 |||||||||||||||||||| Sbjct: 49258 ttgcctattggcaagaaggt 49239
>gb|AC127236.3| Mus musculus BAC clone RP24-351L1 from chromosome 18, complete sequence Length = 188946 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 agagcaagcagaaagagcag 337 |||||||||||||||||||| Sbjct: 67689 agagcaagcagaaagagcag 67708
>emb|X56851.1|PFPFMDR1 P.falciparum pfmdr1 gene Length = 8633 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 593 tggaaaaggagccaccacca 612 |||||||||||||||||||| Sbjct: 6334 tggaaaaggagccaccacca 6353
>emb|AL357037.13| Human DNA sequence from clone RP11-383B24 on chromosome 10 Contains the 3' end of a 44kDA polymerase (RNA) III (DNA directed) polypeptide D (POLR3D) pseudogene, the 3' end of the ADK gene for adenosine kinase and a novel pseudogene, complete sequence Length = 165773 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 aaagcagagcaagcagaaagagca 336 ||||||||| |||||||||||||| Sbjct: 145868 aaagcagaggaagcagaaagagca 145891
>gb|AC098654.2| Homo sapiens chromosome 1 clone RP11-475O6, complete sequence Length = 159975 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 aagggaaaaagaaattgaga 224 |||||||||||||||||||| Sbjct: 133269 aagggaaaaagaaattgaga 133288
>emb|AL035562.14|HS1065O2 Human DNA sequence from clone RP5-1065O2 on chromosome 20p11.21-11.23 Contains the RPL41P1 gene for ribosomal protein L41 pseudogene 1, the SLC25A5L gene for solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator) member 5-like pseudogene, the PAX1 gene for paired box gene 1 and three CpG islands, complete sequence Length = 127192 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 aaagcagagcaagcagaaagagca 336 ||||||||| |||||||||||||| Sbjct: 112686 aaagcagaggaagcagaaagagca 112663
>emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4 Length = 343050 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 593 tggaaaaggagccaccacca 612 |||||||||||||||||||| Sbjct: 303707 tggaaaaggagccaccacca 303726
>emb|BX927211.4| Zebrafish DNA sequence from clone CH211-112A3, complete sequence Length = 65572 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 ttgcctattggcaagaaggt 558 |||||||||||||||||||| Sbjct: 41619 ttgcctattggcaagaaggt 41600
>gb|AY069958.1| Plasmodium falciparum mitochondrial processing peptidase alpha subunit mRNA, complete cds; nuclear gene for mitochondrial product Length = 1689 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 593 tggaaaaggagccaccacca 612 |||||||||||||||||||| Sbjct: 1138 tggaaaaggagccaccacca 1119
>gb|AC048352.18| Homo sapiens 12 BAC RP11-871F6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 216792 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 aaagcagagcaagcagaaagagca 336 ||||||||| |||||||||||||| Sbjct: 159929 aaagcagaggaagcagaaagagca 159906
>gb|AC105094.6| Homo sapiens chromosome 18, clone RP11-1096D5, complete sequence Length = 210317 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 aaagcagagcaagcagaaagagca 336 ||||||||| |||||||||||||| Sbjct: 144590 aaagcagaggaagcagaaagagca 144567
>gb|AC090605.7| Homo sapiens chromosome 15, clone RP11-261P5, complete sequence Length = 166870 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gagcaagcagaaagagcaga 338 |||||||||||||||||||| Sbjct: 67298 gagcaagcagaaagagcaga 67317
>gb|AC110997.4| Homo sapiens chromosome 18, clone RP11-56J20, complete sequence Length = 160456 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 aaagcagagcaagcagaaagagca 336 ||||||||| |||||||||||||| Sbjct: 158105 aaagcagaggaagcagaaagagca 158082
>gb|AC103710.2| Homo sapiens chromosome 11, clone CTD-2379P15, complete sequence Length = 151970 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gaaaagcagagcaagcagaa 330 |||||||||||||||||||| Sbjct: 39869 gaaaagcagagcaagcagaa 39888
>gb|AC011711.8| Homo sapiens chromosome 11, clone RP11-309J20, complete sequence Length = 149542 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gaaaagcagagcaagcagaa 330 |||||||||||||||||||| Sbjct: 109126 gaaaagcagagcaagcagaa 109145
>gb|DQ360502.1| Vibrio vulnificus strain MO6-24/O capsular polysaccharide operon, complete sequence; and unknown gene Length = 23770 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gaaaaagaaattgagattaa 228 |||||||||||||||||||| Sbjct: 14721 gaaaaagaaattgagattaa 14740
>gb|AC009884.8| Homo sapiens chromosome 8, clone RP11-420B22, complete sequence Length = 161443 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 attaaggaaatgaaggagca 243 |||||||||||||||||||| Sbjct: 114606 attaaggaaatgaaggagca 114625
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 atggtcacaatctcttcaaa 48 |||||||||||||||||||| Sbjct: 222898 atggtcacaatctcttcaaa 222917
>gb|AC103595.2| Homo sapiens chromosome 1 clone RP11-415P10, complete sequence Length = 122000 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 aagggaaaaagaaattgaga 224 |||||||||||||||||||| Sbjct: 16671 aagggaaaaagaaattgaga 16690
>gb|AC079945.21| Homo sapiens 3 BAC RP11-689D3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 149249 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 aaagcagagcaagcagaaagagca 336 ||||||||| |||||||||||||| Sbjct: 80767 aaagcagaggaagcagaaagagca 80744
>gb|AC004010.1| Homo sapiens BAC clone GS1-99H8 from 12, complete sequence Length = 140167 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ggagaagcaaagagtttgct 162 |||||||||||||||||||| Sbjct: 107650 ggagaagcaaagagtttgct 107669
>gb|AC131094.3| Homo sapiens BAC clone RP11-598D14 from 4, complete sequence Length = 72143 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 aaagcagagcaagcagaaagagca 336 ||||||||| |||||||||||||| Sbjct: 40682 aaagcagaggaagcagaaagagca 40659
>emb|AL929201.6| Zebrafish DNA sequence from clone CH211-66G24 in linkage group 8, complete sequence Length = 186121 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 536 cagttgcctattggcaagaaggtt 559 |||||||||| ||||||||||||| Sbjct: 43308 cagttgcctaatggcaagaaggtt 43285
>ref|NM_209175.1| Eremothecium gossypii ADL274Wp (ADL274W), mRNA Length = 1545 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 atggtcacaatctcttcaaa 48 |||||||||||||||||||| Sbjct: 29 atggtcacaatctcttcaaa 48
>gb|AC140260.3| Mus musculus BAC clone RP23-311O16 from 6, complete sequence Length = 252791 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 agggaacttgaaaagcagag 321 |||||||||||||||||||| Sbjct: 114864 agggaacttgaaaagcagag 114883
>gb|AC110170.6| Mus musculus chromosome 12, clone RP23-301G24, complete sequence Length = 173081 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagattaaggaaatgaagga 240 |||||||||||||||||||| Sbjct: 93720 gagattaaggaaatgaagga 93701
>emb|AL162891.4|CNS01RI6 Human chromosome 14 DNA sequence BAC R-353P15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163452 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 aaagcagagcaagcagaaagagca 336 ||||||||| |||||||||||||| Sbjct: 34000 aaagcagaggaagcagaaagagca 33977
>emb|AL844204.3| Mouse DNA sequence from clone RP23-189N15 on chromosome 2, complete sequence Length = 162981 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 cacagaagcagctgaagtactctg 461 |||||||||| ||||||||||||| Sbjct: 60068 cacagaagcatctgaagtactctg 60045 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,204,812 Number of Sequences: 3902068 Number of extensions: 6204812 Number of successful extensions: 144915 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 144634 Number of HSP's gapped (non-prelim): 279 length of query: 618 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 595 effective length of database: 17,143,297,704 effective search space: 10200262133880 effective search space used: 10200262133880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)