ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags30e06 |
|---|---|
| Clone Library Name | barley_pub |
>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)| (Fertility restorer) (Restorer for CMS) Length = 791 Score = 51.6 bits (122), Expect = 2e-06 Identities = 44/195 (22%), Positives = 89/195 (45%), Gaps = 6/195 (3%) Frame = +2 Query: 20 EEGYQLVLSMLKRDLVPDDECYIAIVEGFSQKGRMKIAWEVLHRMLNSGLRPSTSTFHSV 199 ++ +++ +M+K ++PD Y +I+ G+ G+ K A L +M + G+ P T+ S+ Sbjct: 248 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTY-SL 306 Query: 200 LLGLLKKEGCAKEAADLIEIMLERKIRQNLDLSTNTIDALFKSSLNDRAYKVITSLYDQG 379 L+ L K G EA + + M +R ++ + + + ++ + G Sbjct: 307 LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 366 Query: 380 ----YYIKMEKLIGDLCEEKKFIEAAELTLFSLQKHHDLGVSISS--TVLDGLCTTGRAS 541 +Y+ LI ++ K +A + +FS + L + + V+ LC +GR Sbjct: 367 IHPDHYV-FSILICAYAKQGKVDQA--MLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 423 Query: 542 DAFRLFYELIESGSS 586 DA F ++I+ G S Sbjct: 424 DAMLYFEQMIDEGLS 438 Score = 48.9 bits (115), Expect = 1e-05 Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 5/184 (2%) Frame = +2 Query: 47 MLKRDLVPDDECYIAIVEGFSQKGRMKIAWEVLHRMLNSGLRPSTSTFHSVLLGLLKKEG 226 M+ L P + Y +++ G + + A E++ ML+ G+ +T F+S++ K EG Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK-EG 490 Query: 227 CAKEAADLIEIMLERKIRQNLDLSTNTIDALFKSSLNDRAYKVITSLYDQGY---YIKME 397 E+ L E+M+ ++ N+ I+ + D A K+++ + G + Sbjct: 491 RVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYS 550 Query: 398 KLIGDLCEEKKFIEAAELTLFSLQKHHDLGVSI--SSTVLDGLCTTGRASDAFRLFYELI 571 LI C+ + +A L LF + + I + +L GL T R + A L+ + Sbjct: 551 TLINGYCKISRMEDA--LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT 608 Query: 572 ESGS 583 ESG+ Sbjct: 609 ESGT 612 Score = 47.0 bits (110), Expect = 4e-05 Identities = 34/174 (19%), Positives = 73/174 (41%), Gaps = 3/174 (1%) Frame = +2 Query: 68 PDDECYIAIVEGFSQKGRMKIAWEVLHRMLNSGLRPSTSTFHSVLLGLLKKEGCAKEAAD 247 PD Y ++ GF ++G A+ H ML+ G+ P T++S++ L K + K A + Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDK-AME 252 Query: 248 LIEIMLERKIRQNLDLSTNTIDALFKSSLNDRAYKVITSLYDQGY---YIKMEKLIGDLC 418 ++ M++ + + + + S A + + G + L+ LC Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLC 312 Query: 419 EEKKFIEAAELTLFSLQKHHDLGVSISSTVLDGLCTTGRASDAFRLFYELIESG 580 + + +EA ++ ++ ++ T+L G T G + L ++ +G Sbjct: 313 KNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 366 Score = 44.3 bits (103), Expect = 3e-04 Identities = 39/189 (20%), Positives = 84/189 (44%), Gaps = 3/189 (1%) Frame = +2 Query: 23 EGYQLVLSMLKRDLVPDDECYIAIVEGFSQKGRMKIAWEVLHRMLNSGLRPSTSTFHSVL 202 E +L M++ + P+ Y ++ G+ G+M A ++L M++ GL+P+T T+ +++ Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553 Query: 203 LGLLKKEGCAKEAADLIEIMLERKIRQNLDLSTNTIDALFKSSLNDRAYKVITSLYDQGY 382 G K ++A L + M + ++ + LF++ A ++ + + G Sbjct: 554 NGYCKISR-MEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT 612 Query: 383 YIKMEK---LIGDLCEEKKFIEAAELTLFSLQKHHDLGVSISSTVLDGLCTTGRASDAFR 553 I++ ++ LC+ K +A ++ L + ++D L GR +A Sbjct: 613 QIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKD 672 Query: 554 LFYELIESG 580 LF +G Sbjct: 673 LFVAFSSNG 681
>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915| Length = 463 Score = 44.7 bits (104), Expect = 2e-04 Identities = 40/178 (22%), Positives = 69/178 (38%) Frame = +2 Query: 26 GYQLVLSMLKRDLVPDDECYIAIVEGFSQKGRMKIAWEVLHRMLNSGLRPSTSTFHSVLL 205 G QL L M + D Y A+V + GR K A+E + ++ G R ++++ LL Sbjct: 242 GLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNT-LL 300 Query: 206 GLLKKEGCAKEAADLIEIMLERKIRQNLDLSTNTIDALFKSSLNDRAYKVITSLYDQGYY 385 L K+G DL+ + R ++ + T ++ L ++ RA Sbjct: 301 NLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRA------------- 347 Query: 386 IKMEKLIGDLCEEKKFIEAAELTLFSLQKHHDLGVSISSTVLDGLCTTGRASDAFRLF 559 E+ F+ E+ + L + + ++DGLC G A R F Sbjct: 348 ------------EEHFVSMGEMGI-------GLNLVTCNCLVDGLCKAGHVDRAMRYF 386 Score = 40.8 bits (94), Expect = 0.003 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 4/182 (2%) Frame = +2 Query: 47 MLKRDLVPDDECYIAIVEGFSQKGRMKIAWEVLHRMLN-SGLRPSTSTFHSVLLGLLKKE 223 ML+ + PD Y ++ + + G+ + A+ VL++ L +GL P T++ VLL L K Sbjct: 109 MLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYN-VLLDALCKC 167 Query: 224 GCAKEAADLIEIMLERKIRQNLDLSTNTIDALFKSSLNDRAYKVITSLYDQGYY---IKM 394 G A +L + M R + L I+ L KS A ++T L GY + Sbjct: 168 GYIDNALELFKEMQSR-FKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTY 226 Query: 395 EKLIGDLCEEKKFIEAAELTLFSLQKHHDLGVSISSTVLDGLCTTGRASDAFRLFYELIE 574 ++ + ++ +L L ++ + V+ L TGR +A+ EL+ Sbjct: 227 TTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVR 286 Query: 575 SG 580 G Sbjct: 287 KG 288
>AEP3_CANGA (Q6FKT1) ATPase expression protein 3| Length = 623 Score = 32.7 bits (73), Expect = 0.86 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +2 Query: 77 ECYIAIVEGFSQKGRMKIAWEVLHRMLNSGLRPSTSTFHSVLLGLLKK 220 +CY I+ +S+K E+ +M G +P+T+T++ +LL L+KK Sbjct: 219 QCYNDILYFYSKKYDFATCRELFAQMKVEGCKPNTTTYNILLLNLVKK 266
>RPOB_PARUW (Q6MDM1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1254 Score = 32.3 bits (72), Expect = 1.1 Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 24/151 (15%) Frame = +2 Query: 230 AKEAADLIEIMLERKIRQNLDLSTNTIDALFKSSLNDRAYKVITSLYDQGYYIKME---- 397 A + DLI I ++RK R+ L+T I AL SS +D + T+ + Y IK E Sbjct: 175 AFDTNDLIHIYIDRKKRRRKILATTFIRALGYSSNSDIIEEFFTT---RKYKIKNEKEFA 231 Query: 398 KLIG-----DLCEEKK---FIEAAE-LTLFSLQKHHDLGVSI---------SSTVLDGLC 523 KL+G D+ +E+ F +A+E LT L++ D G+ + +S V+ L Sbjct: 232 KLVGKILAQDVVDEESGLVFGKASEKLTTAMLKRIVDAGIDVIRIAEDADETSPVIKMLA 291 Query: 524 --TTGRASDAFRLFYELIESGSSSAAVEPRS 610 T A + FY I G + RS Sbjct: 292 KDPTDSYESALKDFYRKIRPGEPATLSNARS 322
>PDXJ_BACTN (Q8A0V3) Pyridoxal phosphate biosynthetic protein pdxJ (PNP| synthase) Length = 237 Score = 31.6 bits (70), Expect = 1.9 Identities = 24/69 (34%), Positives = 33/69 (47%) Frame = +2 Query: 62 LVPDDECYIAIVEGFSQKGRMKIAWEVLHRMLNSGLRPSTSTFHSVLLGLLKKEGCAKEA 241 LVPDD I G+ K ++ EVL + ++G+R TS F V E AK Sbjct: 91 LVPDDPSQITSNSGWDTKANLEFLSEVLDQFNSAGIR--TSVF--VAADPEMVEYAAKAG 146 Query: 242 ADLIEIMLE 268 AD +E+ E Sbjct: 147 ADRVELYTE 155
>EKC1_SCHPO (O74511) Extragenic suppressor of kinetochore protein 1| Length = 838 Score = 30.8 bits (68), Expect = 3.3 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = -3 Query: 151 PVKDLPCNLHPSFLRKPLYDGNVAFIIGHKIPLQHREHQLVPFFKMLLVP 2 PV +P + HP R P+Y G + + KIP+ F K+LL P Sbjct: 299 PVLQMPLDTHPPTTRDPIYLGTMLRLFAEKIPV---------FQKILLKP 339
>ARY_ANTPE (Q7Z1F8) Arylphorin precursor| Length = 704 Score = 30.4 bits (67), Expect = 4.2 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = +2 Query: 359 TSLYDQGYYIKMEKLIGDLCEEKKFIEAAELTLFSLQKHHDLGVSISSTVLDGLCT 526 TSL D +Y ++IG + K+++E S +K H +GV +++ V+D L T Sbjct: 421 TSLRDPTFYQLYNRIIGYFNQFKQYLEP-----HSQEKLHFVGVKVNNVVVDKLVT 471
>APU_THETY (P16950) Amylopullulanase precursor (Alpha-amylase/pullulanase)| [Includes: Alpha-amylase (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase); Pullulanase (EC 3.2.1.41) (1,4-alpha-D-glucan glucanohydrolase) (Alpha-dextrin endo-1,6-alpha-glucosida Length = 1475 Score = 30.4 bits (67), Expect = 4.2 Identities = 23/80 (28%), Positives = 39/80 (48%) Frame = +2 Query: 281 QNLDLSTNTIDALFKSSLNDRAYKVITSLYDQGYYIKMEKLIGDLCEEKKFIEAAELTLF 460 ++L +S ++ +F+S N R YD Y K+++L+GDL KK +E A Sbjct: 463 KSLGISVIYLNPIFQSPSNHR--------YDTTDYTKIDELLGDLSTFKKLMEDA----- 509 Query: 461 SLQKHHDLGVSISSTVLDGL 520 H G+ + +LDG+ Sbjct: 510 -----HAKGIKV---ILDGV 521
>PSD1_CAEEL (Q18115) 26S proteasome non-ATPase regulatory subunit 1 (26S| proteasome regulatory subunit rpn-2) Length = 965 Score = 30.4 bits (67), Expect = 4.2 Identities = 24/115 (20%), Positives = 53/115 (46%) Frame = +2 Query: 137 EVLHRMLNSGLRPSTSTFHSVLLGLLKKEGCAKEAADLIEIMLERKIRQNLDLSTNTIDA 316 E L+R++N S F ++ + K + D+ +I + N + + +TI + Sbjct: 199 ETLNRVVNGAFDRS---FRFQVIDTVIKTYLKCPSPDMSKICECYVLTDNAEAAADTITS 255 Query: 317 LFKSSLNDRAYKVITSLYDQGYYIKMEKLIGDLCEEKKFIEAAELTLFSLQKHHD 481 L SL+ RAY++ LY+ +++++ ++ E + + S+ K H+ Sbjct: 256 LIAKSLSTRAYQIAFDLYETASQGFLDRVLKRFQQQDARDEKSMEKIHSILKGHE 310
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I| Length = 1261 Score = 30.0 bits (66), Expect = 5.6 Identities = 48/211 (22%), Positives = 82/211 (38%), Gaps = 15/211 (7%) Frame = +2 Query: 23 EGYQLVLSMLKRDLVPDDECYIAIVEGFSQKGRMKIAWEVLHRMLNSGLRPSTSTFHSVL 202 E Y +VL + D + +++ S K KI +V MLNS + P+ +TF +V+ Sbjct: 216 EAYNIVLQCMSTD-----DYFLS-----SSKNIQKII-KVYVDMLNSFISPNVTTFETVI 264 Query: 203 LGLLKKEGCAKEAADLIEIMLERKIRQN----LDLSTNTIDALFKSSLNDRAYKVITSL- 367 L ++ AK IE + +R I + ++ +D + L + +SL Sbjct: 265 FALCRR---AKFVHQKIESLSKRTIYAHPSIAKEIQPELLDLQSEMPLQTAVFMFTSSLI 321 Query: 368 -----YDQGYY---IKMEKLIGDLCEEKKFIEAAELTLFSLQKHHDLGVSISSTVLDGLC 523 Y +Y I+ L G + +E L H DL ++ L Sbjct: 322 NHDLIYSPQFYAILIESVSLYGTQSQLDSLLECVPLGTIEANGHPDL----LPALIRALG 377 Query: 524 TTGRASDAFRLF--YELIESGSSSAAVEPRS 610 R + F+L Y L + S ++ RS Sbjct: 378 RAKRLNSCFQLLERYNLSDPTSDTSMTNVRS 408
>RNB_BUCAI (P57354) Exoribonuclease 2 (EC 3.1.13.1) (Exoribonuclease II)| (Ribonuclease II) (RNase II) Length = 649 Score = 30.0 bits (66), Expect = 5.6 Identities = 30/125 (24%), Positives = 51/125 (40%) Frame = +2 Query: 17 FEEGYQLVLSMLKRDLVPDDECYIAIVEGFSQKGRMKIAWEVLHRMLNSGLRPSTSTFHS 196 F+ G V + K L D Y + E +Q+ I W V + + + Sbjct: 122 FQNGDWAVAQLKKHKLKGDHLFYAELTEKITQEDDPLIPWWVTLARHDLDRKEPLAEDDD 181 Query: 197 VLLGLLKKEGCAKEAADLIEIMLERKIRQNLDLSTNTIDALFKSSLNDRAYKVITSLYDQ 376 ++L K+ K+ DL I ++ +++D DALF S N+ +I ++ D Sbjct: 182 LIL---KESDNRKDLTDLDFITIDNTNTKDID------DALFVSEKNNGDISLIVAIADP 232 Query: 377 GYYIK 391 YIK Sbjct: 233 TAYIK 237
>ECR_AEDAE (P49880) Ecdysone receptor (Ecdysteroid receptor)| (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH) Length = 675 Score = 29.6 bits (65), Expect = 7.2 Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 10/155 (6%) Frame = +2 Query: 35 LVLSMLKRDLVPDDECYIAIVEGFSQKGRMKIAWEVLHRMLNSGLRPSTSTFHSVLLGLL 214 L + M +VP+++C I E +QK + K+ N+ + + ST+ S +L +L Sbjct: 251 LAVGMRPECVVPENQCAIKRKEKKAQKEKDKV-------QTNATVSTTNSTYRSEILPIL 303 Query: 215 KKEGCAKEAADLIEIMLERKIRQNLDLSTNTIDALFKSSLNDRAYKVITSLYDQGYYIKM 394 K C I ++ E+ +++N + + A + + YK+I Y GY Sbjct: 304 MK--CDPPPHQAIPLLPEKLLQENRLRNIPLLTANQMAVI----YKLI--WYQDGYEQPS 355 Query: 395 EK-----LIGDLCEEK-----KFIEAAELTLFSLQ 469 E+ +IG EE+ F E+T+ ++Q Sbjct: 356 EEDLKRIMIGSPNEEEDQHDVHFRHITEITILTVQ 390 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,533,034 Number of Sequences: 219361 Number of extensions: 1856784 Number of successful extensions: 4706 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4577 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4703 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
